Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008865

Physical Location & Seq

Genomic Coordinates Forward (+)

5766347 .. 5768817

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10110.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGGAAAGAAAACAAACCAAGAACAAGAAGAGAATGAAGTTGGAGTTGGACAGATTAAGCAACTTACCAAGTGACGTTACGGAACAAATCCTATCATATTTGCCAATCAAAGAAGCAGTGAGGACTAGTATTTTATCAAGCAATTGGAGGCACAAATGGGCTACACTACGCCGTCTTGTGTTTGATGATAAAACAGCTAAACGCAACAGTATTAGAAGAGAAAGAGCTATCGATCATGTTCTTTTACTTCACCGAGGTCCTATAAACACTTTCAAGTTGTCTTCAGAAGAATATATACATAGTTATGAATTCGATAGATGGATTCTTTATCTATCAGGATTCTCTATCAAAGAGTTCATACTAGAAAGGCATCCATCCGGCAGTTACAGTATCTCATCCTGTTTGTTTTCTTATAAAGATCTGAATCACTTAGGGTTAAGAAATTGTTCGCTGAATCCCCCTTTGACATTCAAAGGCTTTGCGATGTTGAAGAGCCTTGATATTAGAAATGTCAGTGTGGCAAAAGATGTGTTGGAAAAAATTATTGTTGGCAGTCCACTGCCCGAGAGAATGATTCTATTCGACTTAGTGAGTGTCGGCGTTCTCGAGGTTGATGCACCAAATCTCCAATTACTTAAAGTTGTTGGTGTTTTTGAAGAAATTAAGCTTCAGAATGTCCCAAATCTAGTTAATGTTTCAATCGGCCAAAAAAGAATCGACTACAAAGAGGTTTCTAGAAGAAATTCTAGCAAATTGCTCCAGTATTTTCTTAGCCTGCCTCGTATTGAAAGACTCACCATTGAAGGTTGCCTTCTAGAGCAATGTGTTGTTAATTCCTTTCCCTTGCCGGCGGAGCTGCCTGAACCGCTTTCATGTCTGAACTTTCTTTATATAAGCATGCGCTTGAATAGTTTGGACGACATTTTAGTTGCTACACTTCTTCTGAAAAGCTCACCTGCTCTACAAGCTCTAGAAATCGAGGTTCGCCATGGGAACAAGTCCAATGCTGAAGAACAAGCAACTGATTGGTTAAATAAGAATCGGCTTTGGGAATTCACTCAACTGCGACGTCTGAAAGTAACCGGCTTCTCTTGTGTTACCGGAGAAGTAAACTTCCTTGACTATCTGTTTTCAAGCTTGCCTGCTCTTCAAGAACTAGAAATTTCGTTTAGAGACAAAAAAAATTTGAGGAAGCAGAAGAGGAAGAGAGTAGATGCTGCTGCTGGGGGAGATTCTAGCAACCGAAAATGCACATTCAACCAACTGAGAATTATGAAAGTAACCAACTGTAGTGGTGTTAAAGCTGAAGCATGTTTCATCAGATTTTTGCTTTCAAGTTCACCTATGCTCAACACGATGATTCTTCAGCCTGTTTCTGCCGGAATTTCTTGGGAACTAGTTGAGTTGATGATATGGTTCAATCGCTATTCGGCGCATGCTGAGTTAAAAGTCTTGAAACCATTATGTCCCTTGAGCGAGTCCTATAATGGCTCCTATACTGAGGGTCGGTACCTCTCCACCACTGAGTCCTACTCTGACGACTCGTCCCACTCTGATGACTTCTCTGATTCTGATGAATCCTTTGATTCTGATGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

534

Amino Acids

61.05

Weight (kDa)

8.51

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	19 - 58	1.3e-08	F-box domain
LRR_At1g61320_AtMIF1	PF23622	90 - 399	4.1e-13	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	105 - 326	1.4e-08	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g10110 FvH4_5g10110 FvH4_5g10120 FvH4_5g10120 FvH4_6g18740
rosa_chinensis	RchiOBHm_Chr3g0473701
rosa_laevigata	RLG00000004674 RLG00000004675 RLG00000023990 RLG00000023992
rosa_multiflora	Rmu_co8411403.1_g000001 Rmu_sc0003069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266170 Rroxscaffold_6G00407920 Rroxscaffold_6G00407930
rosa_rugosa	Rorug03G0134800 Rorug06G0492000
rosa_samantha	Rh3BG213600 Rh7CG100200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
AarI	CACCTGC	1 cut(s)	964
AatII	GACGTC	1 cut(s)	1072
Acc36I	ACCTGC	1 cut(s)	964
Acc65I	GGTACC	1 cut(s)	1509
AccB1I	GGYRCC	1 cut(s)	1509
AciI	CCGC	2 cut(s)	851, 866
AcoI	YGGCCR	1 cut(s)	703
AcsI	RAATTY	6 cut(s)	308, 742, 1052, 1161, 1183, 1383
AcuI	CTGAAG	5 cut(s)	267, 653, 1029, 1326, 1349
AcyI	GRCGYC	1 cut(s)	1069
AfaI	GTAC	1 cut(s)	1511
AhdI	GACNNNNNGTC	1 cut(s)	1543
AhlI	ACTAGT	2 cut(s)	125, 1396
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	8 cut(s)	197, 227, 667, 856, 951, 968, 1137, 1304
AluI	AGCT	8 cut(s)	197, 227, 667, 856, 951, 968, 1137, 1304
Alw26I	GTCTC	1 cut(s)	1167
Ama87I	CYCGRG	2 cut(s)	563, 605
AoxI	GGCC	1 cut(s)	703
ApeKI	GCWGC	3 cut(s)	856, 1217, 1220
ApoI	RAATTY	6 cut(s)	308, 742, 1052, 1161, 1183, 1383
Asp700I	GAANNNNTTC	2 cut(s)	445, 742
Asp718I	GGTACC	1 cut(s)	1509
AspLEI	GCGC	2 cut(s)	903, 1435
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	4 cut(s)	242, 787, 945, 1332
AvaI	CYCGRG	2 cut(s)	563, 605
AvaII	GGWCC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	1509
BarI	GAAGNNNNNNTAC	2 cut(s)	279, 311
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	843, 1204, 1207
BccI	CCATC	2 cut(s)	312, 382
BceAI	ACGGC	1 cut(s)	156
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BcoDI	GTCTC	1 cut(s)	1167
BcuI	ACTAGT	2 cut(s)	125, 1396
BfmI	CTRYAG	1 cut(s)	1288
BfuAI	ACCTGC	1 cut(s)	964
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	3 cut(s)	857, 1218, 1221
BlsI	GCNGC	3 cut(s)	858, 1219, 1222
Bme18I	GGWCC	1 cut(s)	257
BmeRI	GACNNNNNGTC	1 cut(s)	1543
BmeT110I	CYCGRG	2 cut(s)	563, 605
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	1492, 1511
BmsI	GCATC	3 cut(s)	379, 604, 1204
BpiI	GAAGAC	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	1517, 1549
BpmI	CTGGAG	1 cut(s)	743
BpuEI	CTTGAG	1 cut(s)	1492
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	1069
BsaJI	CCNNGG	2 cut(s)	253, 988
BsaWI	WCCGGW	1 cut(s)	1100
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bse118I	RCCGGY	2 cut(s)	847, 1082
Bse1I	ACTGG	1 cut(s)	760
Bse3DI	GCAATG	1 cut(s)	827
Bse8I	GATNNNNATC	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	253, 988
BseGI	GGATG	3 cut(s)	370, 374, 395
BseJI	GATNNNNATC	1 cut(s)	423
BseMI	GCAATG	1 cut(s)	827
BseMII	CTCAG	4 cut(s)	1256, 1431, 1491, 1515
BseNI	ACTGG	1 cut(s)	760
BseXI	GCAGC	3 cut(s)	843, 1204, 1207
BseYI	CCCAGC	1 cut(s)	1223
BshFI	GGCC	1 cut(s)	705
BshNI	GGYRCC	1 cut(s)	1509
BshVI	ATCGAT	1 cut(s)	231
BsiHKCI	CYCGRG	2 cut(s)	563, 605
BsiSI	CCGG	5 cut(s)	378, 848, 1083, 1101, 1380
BslFI	GGGAC	3 cut(s)	662, 1452, 1531
BsmAI	GTCTC	1 cut(s)	1167
BsmFI	GGGAC	3 cut(s)	662, 1452, 1531
BsnI	GGCC	1 cut(s)	705
BsoBI	CYCGRG	2 cut(s)	563, 605
Bsp143I	GATC	2 cut(s)	232, 418
Bsp19I	CCATGG	1 cut(s)	988
BspACI	CCGC	2 cut(s)	851, 866
BspANI	GGCC	1 cut(s)	705
BspCNI	CTCAG	4 cut(s)	1257, 1432, 1492, 1516
BspDI	ATCGAT	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	1492, 1511
BspMI	ACCTGC	1 cut(s)	964
BspQI	GCTCTTC	2 cut(s)	485, 1152
BspT107I	GGYRCC	1 cut(s)	1509
BsrDI	GCAATG	1 cut(s)	827
BsrFI	RCCGGY	2 cut(s)	847, 1082
BsrI	ACTGG	1 cut(s)	760
BssAI	RCCGGY	2 cut(s)	847, 1082
BssECI	CCNNGG	2 cut(s)	253, 988
BssMI	GATC	2 cut(s)	232, 418
BssNI	GRCGYC	1 cut(s)	1069
BssT1I	CCWWGG	1 cut(s)	988
Bst4CI	ACNGT	3 cut(s)	209, 389, 1289
Bst6I	CTCTTC	6 cut(s)	23, 211, 485, 1152, 1193, 1199
BstACI	GRCGYC	1 cut(s)	1069
BstC8I	GCNNGC	6 cut(s)	776, 849, 899, 1139, 1143, 1437
BstDEI	CTNAG	7 cut(s)	430, 586, 770, 1265, 1440, 1500, 1524
BstDSI	CCRYGG	1 cut(s)	988
BstF5I	GGATG	3 cut(s)	370, 374, 395
BstHHI	GCGC	2 cut(s)	903, 1435
BstKTI	GATC	2 cut(s)	235, 421
BstMAI	GTCTC	1 cut(s)	1167
BstMBI	GATC	2 cut(s)	232, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	853, 865, 965
BstNSI	RCATGY	3 cut(s)	901, 1314, 1439
BstSFI	CTRYAG	1 cut(s)	1288
BstV1I	GCAGC	3 cut(s)	843, 1204, 1207
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	705
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	988
BtgZI	GCGATG	1 cut(s)	497
BtsCI	GGATG	3 cut(s)	370, 374, 395
BtsI	GCAGTG	2 cut(s)	123, 557
BtsIMutI	CAGTG	4 cut(s)	123, 520, 557, 1521
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	6 cut(s)	776, 849, 899, 1139, 1143, 1437
CfoI	GCGC	2 cut(s)	903, 1435
Cfr10I	RCCGGY	2 cut(s)	847, 1082
Cfr13I	GGNCC	1 cut(s)	257
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	1510
CspCI	CAANNNNNGTGG	2 cut(s)	1273, 1308
CviAII	CATG	6 cut(s)	236, 873, 898, 989, 1311, 1436
CviQI	GTAC	1 cut(s)	1510
DdeI	CTNAG	7 cut(s)	430, 586, 770, 1265, 1440, 1500, 1524
DpnI	GATC	2 cut(s)	234, 420
DpnII	GATC	2 cut(s)	232, 418
DriI	GACNNNNNGTC	1 cut(s)	1543
EaeI	YGGCCR	1 cut(s)	703
Eam1104I	CTCTTC	6 cut(s)	23, 211, 485, 1152, 1193, 1199
Eam1105I	GACNNNNNGTC	1 cut(s)	1543
EarI	CTCTTC	6 cut(s)	23, 211, 485, 1152, 1193, 1199
EciI	GGCGGA	1 cut(s)	866
Eco130I	CCWWGG	1 cut(s)	988
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	5 cut(s)	267, 653, 1029, 1326, 1349
Eco88I	CYCGRG	2 cut(s)	563, 605
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRI	GAATTC	2 cut(s)	308, 1052
EcoT14I	CCWWGG	1 cut(s)	988
ErhI	CCWWGG	1 cut(s)	988
FaeI	CATG	6 cut(s)	239, 876, 901, 992, 1314, 1439
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FaqI	GGGAC	3 cut(s)	662, 1452, 1531
FatI	CATG	6 cut(s)	235, 872, 897, 988, 1310, 1435
Fnu4HI	GCNGC	3 cut(s)	857, 1218, 1221
FokI	GGATG	3 cut(s)	357, 361, 382
Fsp4HI	GCNGC	3 cut(s)	857, 1218, 1221
GlaI	GCGC	2 cut(s)	902, 1434
GluI	GCNGC	3 cut(s)	857, 1218, 1221
GsaI	CCCAGC	1 cut(s)	1227
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	1 cut(s)	705
HapII	CCGG	5 cut(s)	378, 848, 1083, 1101, 1380
HhaI	GCGC	2 cut(s)	903, 1435
Hin1I	GRCGYC	1 cut(s)	1069
Hin1II	CATG	6 cut(s)	239, 876, 901, 992, 1314, 1439
Hin6I	GCGC	2 cut(s)	901, 1433
HinP1I	GCGC	2 cut(s)	901, 1433
HindIII	AAGCTT	2 cut(s)	665, 1135
HpaII	CCGG	5 cut(s)	378, 848, 1083, 1101, 1380
HphI	GGTGA	4 cut(s)	242, 787, 945, 1332
Hpy166II	GTNNAC	3 cut(s)	557, 1111, 1340
Hpy188III	TCNNGA	7 cut(s)	336, 605, 735, 815, 971, 1151, 1453
Hpy8I	GTNNAC	3 cut(s)	557, 1111, 1340
Hpy99I	CGWCG	1 cut(s)	1071
HpyAV	CCTTC	2 cut(s)	797, 821
HpyCH4III	ACNGT	3 cut(s)	209, 389, 1289
HpyCH4IV	ACGT	2 cut(s)	75, 1069
HpyCH4V	TGCA	2 cut(s)	617, 1251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	853, 865, 965
HpyF3I	CTNAG	7 cut(s)	430, 586, 770, 1265, 1440, 1500, 1524
HpySE526I	ACGT	2 cut(s)	75, 1069
Hsp92I	GRCGYC	1 cut(s)	1069
Hsp92II	CATG	6 cut(s)	239, 876, 901, 992, 1314, 1439
HspAI	GCGC	2 cut(s)	901, 1433
KpnI	GGTACC	1 cut(s)	1513
KroI	GCCGGC	1 cut(s)	847
KroNI	GCCGGC	1 cut(s)	849
Kzo9I	GATC	2 cut(s)	232, 418
LguI	GCTCTTC	2 cut(s)	485, 1152
LmnI	GCTCC	3 cut(s)	762, 853, 1496
Lsp1109I	GCAGC	3 cut(s)	843, 1204, 1207
LweI	GCATC	3 cut(s)	379, 604, 1204
MaeII	ACGT	2 cut(s)	75, 1069
MaeIII	GTNAC	6 cut(s)	71, 76, 383, 1078, 1096, 1279
MalI	GATC	2 cut(s)	234, 420
MboI	GATC	2 cut(s)	232, 418
MfeI	CAATTG	1 cut(s)	142
MflI	RGATCY	1 cut(s)	418
MlyI	GAGTC	4 cut(s)	786, 1487, 1535, 1535
MmeI	TCCRAC	3 cut(s)	21, 27, 513
MroNI	GCCGGC	1 cut(s)	847
MroXI	GAANNNNTTC	2 cut(s)	445, 742
MseI	TTAA	9 cut(s)	56, 437, 636, 663, 690, 831, 1031, 1299, 1445
MslI	CAYNNNNRTG	2 cut(s)	303, 1554
MspI	CCGG	5 cut(s)	378, 848, 1083, 1101, 1380
MunI	CAATTG	1 cut(s)	142
MwoI	GCNNNNNNNGC	3 cut(s)	853, 865, 965
NaeI	GCCGGC	1 cut(s)	849
NcoI	CCATGG	1 cut(s)	988
NdeII	GATC	2 cut(s)	232, 418
NgoMIV	GCCGGC	1 cut(s)	847
NlaIII	CATG	6 cut(s)	239, 876, 901, 992, 1314, 1439
NlaIV	GGNNCC	2 cut(s)	1492, 1511
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	3 cut(s)	901, 1314, 1439
PaeI	GCATGC	2 cut(s)	901, 1439
PaeR7I	CTCGAG	1 cut(s)	605
PaqCI	CACCTGC	1 cut(s)	964
PciSI	GCTCTTC	2 cut(s)	485, 1152
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PdiI	GCCGGC	1 cut(s)	849
PdmI	GAANNNNTTC	2 cut(s)	445, 742
PkrI	GCNGC	3 cut(s)	858, 1219, 1222
PleI	GAGTC	4 cut(s)	786, 1486, 1534, 1535
PpsI	GAGTC	4 cut(s)	786, 1486, 1534, 1535
PpuMI	RGGWCCY	1 cut(s)	257
PsiI	TTATAA	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	1223
PspN4I	GGNNCC	2 cut(s)	1492, 1511
PspPI	GGNCC	1 cut(s)	257
PspPPI	RGGWCCY	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	418
RsaI	GTAC	1 cut(s)	1511
RsaNI	GTAC	1 cut(s)	1510
RseI	CAYNNNNRTG	2 cut(s)	303, 1554
SapI	GCTCTTC	2 cut(s)	485, 1152
SaqAI	TTAA	9 cut(s)	56, 437, 636, 663, 690, 831, 1031, 1299, 1445
SatI	GCNGC	3 cut(s)	857, 1218, 1221
Sau3AI	GATC	2 cut(s)	232, 418
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	4 cut(s)	786, 1487, 1535, 1535
SfaNI	GCATC	3 cut(s)	379, 604, 1204
SfcI	CTRYAG	1 cut(s)	1288
Sfr274I	CTCGAG	1 cut(s)	605
SinI	GGWCC	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	605
SmiMI	CAYNNNNRTG	2 cut(s)	303, 1554
SmlI	CTYRAG	2 cut(s)	605, 1471
SmoI	CTYRAG	2 cut(s)	605, 1471
SpeI	ACTAGT	2 cut(s)	125, 1396
SphI	GCATGC	2 cut(s)	901, 1439
SsiI	CCGC	2 cut(s)	851, 866
StyI	CCWWGG	1 cut(s)	988
TaaI	ACNGT	3 cut(s)	209, 389, 1289
TaiI	ACGT	2 cut(s)	78, 1072
TaqI	TCGA	6 cut(s)	231, 312, 582, 606, 717, 978
Tru1I	TTAA	9 cut(s)	56, 437, 636, 663, 690, 831, 1031, 1299, 1445
Tru9I	TTAA	9 cut(s)	56, 437, 636, 663, 690, 831, 1031, 1299, 1445
TscAI	CASTG	4 cut(s)	123, 520, 564, 1528
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	3 cut(s)	856, 1217, 1220
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	7 cut(s)	50, 321, 346, 861, 1289, 1306, 1590
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	4 cut(s)	123, 520, 564, 1528
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	6 cut(s)	308, 742, 1052, 1161, 1183, 1383
XbaI	TCTAGA	3 cut(s)	734, 814, 970
XceI	RCATGY	3 cut(s)	901, 1314, 1439
XhoI	CTCGAG	1 cut(s)	605
XmnI	GAANNNNTTC	2 cut(s)	445, 742
ZraI	GACGTC	1 cut(s)	1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.