Rroxscaffold_3G00266170

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
59540732 .. 59542588
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266170.1

Sequence Viewer

Length: 1518 bp
ATGGGAGGAAAACGAACCGAGAACAAGAAAGGGAAGTTGGATTTGGACAAACTAAGCAACTTACCAAGTGATGTTACAGAACAGATCTTAGCATATTTGCCAATCAGAGAAGCAGTGAGGACAAGTGTTTTATCAAGTAAATGGAGGCACAAATGGACCACGCTTCGGCGTCTTGTGTTTGATGATAAAACAGCTATACGCTGCGTTATTGAAAGAGTTATCGATCATGTTCTGTTACTTCATGAAGGTCCCGTAGACACTTTCAAGTTGTCTACGGACAAATATATAAAGACTGCTGAATTTGATAGATGGATTCTTTATCTATCAAGATTCTCTGTCAAAGAGTTCATACTGGAAAAAGGGACTTCCTCTTGCAATGACAAGATCTCTTCTCATTTGTTTTCTTATAAAGATTTGACTCACTTGGGGTTAAACAATTGTTCGCTAAAGCCCCCTTTGACATTCAAAGGCTTTGCGATGTTGAAGAGCCTTGATATTCGAAATGTCATTGTGGCAGAATATGTTTTGGAAAAAATTATTGTTGGCTGTCCACTGCTCGAGAGAATGAGGATTTTATGTGACTTAGTGAGCATCACCCATCTCAAGATTGATTCACCGAATCTCCAATTCCTTGAAGTTAGAGGTGTTTTTGAAGACATTATACTTCAGAATACCCCAAATCTTGTTGATGTTTCAATCGACCCAAAAATGGCTTCTAGAAGTAGTAGTTATAGCAAATTGCTCCAGTATTTTCTTAGCCTGCCTCGTATTGAAAGGCTCACAATTGATGGTTGCCTTTTACAGCACTGTGTAAATTCCTTGCCGACGGAGCTGCCTGAACCGTGTCCATGTCTGAACTTTCTTTCTATAAGCATGCGCTTTAATAATTTGAACGACATTTTAATTGCTATCTGTCTTCTGAGAAGCTCACCTGCTCTACAAGTACTAGAAATCGTGGTTCTCAAAGAGAATAAGGCTGCTGCTGGAGAACAAGCTACCAATTGGTTAAATAACAATCGGCTTTGGGAATTCACTCAACTGCGACGTTTGAAAGTAACCGGCCTCTATGGTGTTACTGGAGAATTTAGAGACAACAAGAAAATGGGGATGGGATTAGATGCTGCTGCTGTCGGAGATTATAGCAATCGAAAATGCACATTCAACCAACTGAGAGTTATAAAAGTAACCAAATTTCGTGGTGTCAAAGCTGAAGCAGGTTTCATCGGATTTCTGCTTTCAAGTTCACCTATGCTCAAGACGATGACTCTTCAGCCTGCTTCTACTGAAGTTTCTTGGGAAGTACTTAAGGTGGTGACCGAGTTTAAGCGCGAGTCAGGGCATGCTGAGTTAAAGTTGTTGGACCCATTAAGTCCTTTGAGGGAGTCTTATAATGGCTCCCATACTGACCGGTACCTCCGCACCAAGGCCTCCTCTAATGACTCTTTTGATGAGTCCCTTGATGACTCTTCTGATGAGTCCCTTGATGACTCTTCTAATGAGTCCCTTGATGACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

505

Amino Acids

57.21

Weight (kDa)

7.53

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 57 3.1e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 85 - 320 2.6e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 102 - 318 2.2e-18 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 408, 1178, 1389
AarI CACCTGC 1 cut(s) 940
Acc36I ACCTGC 2 cut(s) 940, 1205
Acc65I GGTACC 1 cut(s) 1410
AccB1I GGYRCC 1 cut(s) 1410
AccI GTMKAC 2 cut(s) 255, 272
AccII CGCG 1 cut(s) 1329
AciI CCGC 1 cut(s) 1417
AcsI RAATTY 5 cut(s) 299, 814, 1028, 1082, 1190
AcuI CTGAAG 4 cut(s) 650, 1230, 1253, 1305
AcyI GRCGYC 1 cut(s) 169
AfaI GTAC 3 cut(s) 945, 1302, 1412
AfiI CCNNNNNNNGG 3 cut(s) 165, 709, 1423
AflII CTTAAG 1 cut(s) 1304
AgeI ACCGGT 1 cut(s) 1407
AjuI GAANNNNNNNTTGG 6 cut(s) 20, 26, 52, 58, 697, 729
AluBI AGCT 5 cut(s) 194, 832, 927, 995, 1208
AluI AGCT 5 cut(s) 194, 832, 927, 995, 1208
Alw26I GTCTC 1 cut(s) 1083
Ama87I CYCGRG 1 cut(s) 557
AoxI GGCC 2 cut(s) 1060, 1425
ApeKI GCWGC 6 cut(s) 201, 832, 977, 980, 1121, 1124
ApoI RAATTY 5 cut(s) 299, 814, 1028, 1082, 1190
AsiGI ACCGGT 1 cut(s) 1407
Asp718I GGTACC 1 cut(s) 1410
AspLEI GCGC 2 cut(s) 879, 1329
AspS9I GGNCC 3 cut(s) 156, 248, 1360
AsuHPI GGTGA 5 cut(s) 586, 606, 921, 1236, 1324
AsuII TTCGAA 1 cut(s) 499
AvaI CYCGRG 1 cut(s) 557
AvaII GGWCC 3 cut(s) 156, 248, 1360
BanI GGYRCC 1 cut(s) 1410
BarI GAAGNNNNNNTAC 2 cut(s) 645, 677
BbsI GAAGAC 2 cut(s) 660, 908
BbvI GCAGC 6 cut(s) 188, 819, 964, 967, 1108, 1111
BccI CCATC 4 cut(s) 303, 606, 782, 1102
BcgI CGANNNNNNTGC 2 cut(s) 814, 848
BcoDI GTCTC 1 cut(s) 1083
BfaI CTAG 2 cut(s) 717, 947
BfrI CTTAAG 1 cut(s) 1304
BfuAI ACCTGC 2 cut(s) 940, 1205
BglII AGATCT 2 cut(s) 84, 384
BisI GCNGC 6 cut(s) 202, 833, 978, 981, 1122, 1125
BlsI GCNGC 6 cut(s) 203, 834, 979, 982, 1123, 1126
BmcAI AGTACT 2 cut(s) 945, 1302
Bme18I GGWCC 3 cut(s) 156, 248, 1360
BmeT110I CYCGRG 1 cut(s) 557
BmgT120I GGNCC 3 cut(s) 156, 248, 1360
BmiI GGNNCC 4 cut(s) 250, 1362, 1396, 1412
BmsI GCATC 2 cut(s) 600, 1108
BpiI GAAGAC 2 cut(s) 660, 908
BpmI CTGGAG 3 cut(s) 728, 1005, 1098
Bpu14I TTCGAA 1 cut(s) 499
BpuEI CTTGAG 2 cut(s) 587, 1238
Bsa29I ATCGAT 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 1422
BsaWI WCCGGW 1 cut(s) 1407
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 709, 1423
Bse118I RCCGGY 2 cut(s) 1058, 1407
Bse1I ACTGG 3 cut(s) 357, 745, 1081
Bse3DI GCAATG 1 cut(s) 382
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 1422
BseGI GGATG 1 cut(s) 1113
BseLI CCNNNNNNNGG 3 cut(s) 165, 709, 1423
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 3 cut(s) 911, 1160, 1335
BseNI ACTGG 3 cut(s) 357, 745, 1081
BseRI GAGGAG 1 cut(s) 1420
BseXI GCAGC 6 cut(s) 188, 819, 964, 967, 1108, 1111
Bsh1236I CGCG 1 cut(s) 1329
BshFI GGCC 2 cut(s) 1062, 1427
BshNI GGYRCC 1 cut(s) 1410
BshTI ACCGGT 1 cut(s) 1407
BshVI ATCGAT 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 557
BsiSI CCGG 2 cut(s) 1059, 1408
BslFI GGGAC 5 cut(s) 234, 376, 1438, 1462, 1486
BslI CCNNNNNNNGG 3 cut(s) 165, 709, 1423
BsmAI GTCTC 1 cut(s) 1083
BsmFI GGGAC 5 cut(s) 234, 376, 1438, 1462, 1486
BsnI GGCC 2 cut(s) 1062, 1427
BsoBI CYCGRG 1 cut(s) 557
Bsp119I TTCGAA 1 cut(s) 499
Bsp143I GATC 3 cut(s) 84, 223, 384
BspACI CCGC 1 cut(s) 1417
BspANI GGCC 2 cut(s) 1062, 1427
BspCNI CTCAG 3 cut(s) 912, 1161, 1336
BspDI ATCGAT 1 cut(s) 222
BspFNI CGCG 1 cut(s) 1329
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 4 cut(s) 250, 1362, 1396, 1412
BspMI ACCTGC 2 cut(s) 940, 1205
BspQI GCTCTTC 1 cut(s) 479
BspT104I TTCGAA 1 cut(s) 499
BspT107I GGYRCC 1 cut(s) 1410
BspTI CTTAAG 1 cut(s) 1304
BsrDI GCAATG 1 cut(s) 382
BsrFI RCCGGY 2 cut(s) 1058, 1407
BsrI ACTGG 3 cut(s) 357, 745, 1081
BssAI RCCGGY 2 cut(s) 1058, 1407
BssECI CCNNGG 1 cut(s) 1422
BssMI GATC 3 cut(s) 84, 223, 384
BssNI GRCGYC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 1422
Bst4CI ACNGT 2 cut(s) 809, 843
Bst6I CTCTTC 5 cut(s) 394, 479, 1272, 1471, 1495
BstACI GRCGYC 1 cut(s) 169
BstAFI CTTAAG 1 cut(s) 1304
BstBI TTCGAA 1 cut(s) 499
BstC8I GCNNGC 4 cut(s) 761, 875, 1275, 1341
BstDEI CTNAG 7 cut(s) 53, 88, 583, 755, 920, 1169, 1344
BstEII GGTNACC 1 cut(s) 1312
BstF5I GGATG 1 cut(s) 1113
BstFNI CGCG 1 cut(s) 1329
BstHHI GCGC 2 cut(s) 879, 1329
BstKTI GATC 3 cut(s) 87, 226, 387
BstMAI GTCTC 1 cut(s) 1083
BstMBI GATC 3 cut(s) 84, 223, 384
BstMWI GCNNNNNNNGC 1 cut(s) 829
BstNSI RCATGY 2 cut(s) 877, 1343
BstPI GGTNACC 1 cut(s) 1312
BstUI CGCG 1 cut(s) 1329
BstV1I GCAGC 6 cut(s) 188, 819, 964, 967, 1108, 1111
BstV2I GAAGAC 2 cut(s) 660, 908
BstX2I RGATCY 2 cut(s) 84, 384
BstYI RGATCY 2 cut(s) 84, 384
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 2 cut(s) 1062, 1427
BsuTUI ATCGAT 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 491
BtsCI GGATG 1 cut(s) 1113
BtsI GCAGTG 2 cut(s) 120, 551
BtsIMutI CAGTG 3 cut(s) 120, 551, 805
BveI ACCTGC 2 cut(s) 940, 1205
Cac8I GCNNGC 4 cut(s) 761, 875, 1275, 1341
CciI TCATGA 1 cut(s) 241
CfoI GCGC 2 cut(s) 879, 1329
Cfr10I RCCGGY 2 cut(s) 1058, 1407
Cfr13I GGNCC 3 cut(s) 156, 248, 1360
ClaI ATCGAT 1 cut(s) 222
CseI GACGC 1 cut(s) 158
Csp6I GTAC 3 cut(s) 944, 1301, 1411
CspAI ACCGGT 1 cut(s) 1407
CspCI CAANNNNNGTGG 2 cut(s) 1177, 1212
CviAII CATG 5 cut(s) 227, 242, 849, 874, 1340
CviQI GTAC 3 cut(s) 944, 1301, 1411
DdeI CTNAG 7 cut(s) 53, 88, 583, 755, 920, 1169, 1344
DpnI GATC 3 cut(s) 86, 225, 386
DpnII GATC 3 cut(s) 84, 223, 384
Eam1104I CTCTTC 5 cut(s) 394, 479, 1272, 1471, 1495
EarI CTCTTC 5 cut(s) 394, 479, 1272, 1471, 1495
Eco130I CCWWGG 1 cut(s) 1422
Eco147I AGGCCT 1 cut(s) 1427
Eco47I GGWCC 3 cut(s) 156, 248, 1360
Eco57I CTGAAG 4 cut(s) 650, 1230, 1253, 1305
Eco88I CYCGRG 1 cut(s) 557
Eco91I GGTNACC 1 cut(s) 1312
EcoO109I RGGNCCY 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 1312
EcoRI GAATTC 1 cut(s) 1028
EcoT14I CCWWGG 1 cut(s) 1422
ErhI CCWWGG 1 cut(s) 1422
FaeI CATG 5 cut(s) 230, 245, 852, 877, 1343
FaqI GGGAC 5 cut(s) 234, 376, 1438, 1462, 1486
FatI CATG 5 cut(s) 226, 241, 848, 873, 1339
FblI GTMKAC 2 cut(s) 255, 272
Fnu4HI GCNGC 6 cut(s) 202, 833, 978, 981, 1122, 1125
FokI GGATG 1 cut(s) 1120
Fsp4HI GCNGC 6 cut(s) 202, 833, 978, 981, 1122, 1125
FspBI CTAG 2 cut(s) 717, 947
GlaI GCGC 2 cut(s) 878, 1328
GluI GCNGC 6 cut(s) 202, 833, 978, 981, 1122, 1125
GsuI CTGGAG 3 cut(s) 728, 1005, 1098
HaeIII GGCC 2 cut(s) 1062, 1427
HapII CCGG 2 cut(s) 1059, 1408
HgaI GACGC 1 cut(s) 158
HhaI GCGC 2 cut(s) 879, 1329
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 5 cut(s) 230, 245, 852, 877, 1343
Hin6I GCGC 2 cut(s) 877, 1327
HinP1I GCGC 2 cut(s) 877, 1327
HpaII CCGG 2 cut(s) 1059, 1408
HphI GGTGA 5 cut(s) 586, 606, 921, 1236, 1324
Hpy166II GTNNAC 4 cut(s) 256, 273, 551, 1244
Hpy188I TCNGA 7 cut(s) 107, 669, 855, 921, 1133, 1226, 1471
Hpy188III TCNNGA 6 cut(s) 242, 327, 559, 604, 717, 1255
Hpy8I GTNNAC 4 cut(s) 256, 273, 551, 1244
Hpy99I CGWCG 2 cut(s) 829, 1047
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 2 cut(s) 809, 843
HpyCH4IV ACGT 1 cut(s) 1045
HpyCH4V TGCA 2 cut(s) 375, 1155
HpyF10VI GCNNNNNNNGC 1 cut(s) 829
HpyF3I CTNAG 7 cut(s) 53, 88, 583, 755, 920, 1169, 1344
HpySE526I ACGT 1 cut(s) 1045
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 5 cut(s) 230, 245, 852, 877, 1343
HspAI GCGC 2 cut(s) 877, 1327
KpnI GGTACC 1 cut(s) 1414
Kzo9I GATC 3 cut(s) 84, 223, 384
LguI GCTCTTC 1 cut(s) 479
LmnI GCTCC 3 cut(s) 747, 829, 1400
Lsp1109I GCAGC 6 cut(s) 188, 819, 964, 967, 1108, 1111
LweI GCATC 2 cut(s) 600, 1108
MaeI CTAG 2 cut(s) 717, 947
MaeII ACGT 1 cut(s) 1045
MaeIII GTNAC 7 cut(s) 73, 234, 578, 1054, 1072, 1183, 1312
MalI GATC 3 cut(s) 86, 225, 386
MboI GATC 3 cut(s) 84, 223, 384
MboII GAAGA 7 cut(s) 381, 496, 665, 908, 1259, 1458, 1482
MfeI CAATTG 3 cut(s) 436, 783, 1000
MflI RGATCY 2 cut(s) 84, 384
MmeI TCCRAC 3 cut(s) 18, 1111, 1338
MseI TTAA 8 cut(s) 431, 882, 902, 1007, 1305, 1323, 1349, 1367
MspCI CTTAAG 1 cut(s) 1304
MspI CCGG 2 cut(s) 1059, 1408
MunI CAATTG 3 cut(s) 436, 783, 1000
MvnI CGCG 1 cut(s) 1329
MwoI GCNNNNNNNGC 1 cut(s) 829
NdeII GATC 3 cut(s) 84, 223, 384
NlaIII CATG 5 cut(s) 230, 245, 852, 877, 1343
NlaIV GGNNCC 4 cut(s) 250, 1362, 1396, 1412
NmuCI GTSAC 2 cut(s) 578, 1312
NspI RCATGY 2 cut(s) 877, 1343
NspV TTCGAA 1 cut(s) 499
PaeI GCATGC 2 cut(s) 877, 1343
PaeR7I CTCGAG 1 cut(s) 557
PagI TCATGA 1 cut(s) 241
PaqCI CACCTGC 1 cut(s) 940
PceI AGGCCT 1 cut(s) 1427
PciSI GCTCTTC 1 cut(s) 479
PfeI GAWTC 4 cut(s) 313, 330, 611, 619
PinAI ACCGGT 1 cut(s) 1407
PkrI GCNGC 6 cut(s) 203, 834, 979, 982, 1123, 1126
PpuMI RGGWCCY 1 cut(s) 248
PsiI TTATAA 3 cut(s) 408, 1178, 1389
Psp5II RGGWCCY 1 cut(s) 248
PspEI GGTNACC 1 cut(s) 1312
PspN4I GGNNCC 4 cut(s) 250, 1362, 1396, 1412
PspPI GGNCC 3 cut(s) 156, 248, 1360
PspPPI RGGWCCY 1 cut(s) 248
PsuI RGATCY 2 cut(s) 84, 384
RsaI GTAC 3 cut(s) 945, 1302, 1412
RsaNI GTAC 3 cut(s) 944, 1301, 1411
SapI GCTCTTC 1 cut(s) 479
SaqAI TTAA 8 cut(s) 431, 882, 902, 1007, 1305, 1323, 1349, 1367
SatI GCNGC 6 cut(s) 202, 833, 978, 981, 1122, 1125
Sau3AI GATC 3 cut(s) 84, 223, 384
Sau96I GGNCC 3 cut(s) 156, 248, 1360
ScaI AGTACT 2 cut(s) 945, 1302
SfaNI GCATC 2 cut(s) 600, 1108
Sfr274I CTCGAG 1 cut(s) 557
SfuI TTCGAA 1 cut(s) 499
SinI GGWCC 3 cut(s) 156, 248, 1360
SlaI CTCGAG 1 cut(s) 557
SmlI CTYRAG 4 cut(s) 557, 602, 1253, 1304
SmoI CTYRAG 4 cut(s) 557, 602, 1253, 1304
SphI GCATGC 2 cut(s) 877, 1343
SseBI AGGCCT 1 cut(s) 1427
SsiI CCGC 1 cut(s) 1417
SspMI CTAG 2 cut(s) 717, 947
StuI AGGCCT 1 cut(s) 1427
StyI CCWWGG 1 cut(s) 1422
TaaI ACNGT 2 cut(s) 809, 843
TaiI ACGT 1 cut(s) 1048
TaqI TCGA 5 cut(s) 222, 499, 558, 699, 1147
TaqII GACCGA 1 cut(s) 1331
TatI WGTACW 2 cut(s) 943, 1300
TfiI GAWTC 4 cut(s) 313, 330, 611, 619
Tru1I TTAA 8 cut(s) 431, 882, 902, 1007, 1305, 1323, 1349, 1367
Tru9I TTAA 8 cut(s) 431, 882, 902, 1007, 1305, 1323, 1349, 1367
TscAI CASTG 3 cut(s) 120, 558, 812
TseFI GTSAC 2 cut(s) 578, 1312
TseI GCWGC 6 cut(s) 201, 832, 977, 980, 1121, 1124
Tsp45I GTSAC 2 cut(s) 578, 1312
TspDTI ATGAA 4 cut(s) 230, 258, 337, 1210
TspGWI ACGGA 2 cut(s) 290, 842
TspRI CASTG 3 cut(s) 120, 558, 812
Vha464I CTTAAG 1 cut(s) 1304
VpaK11BI GGWCC 3 cut(s) 156, 248, 1360
XapI RAATTY 5 cut(s) 299, 814, 1028, 1082, 1190
XbaI TCTAGA 1 cut(s) 716
XceI RCATGY 2 cut(s) 877, 1343
XhoI CTCGAG 1 cut(s) 557
XmiI GTMKAC 2 cut(s) 255, 272
XspI CTAG 2 cut(s) 717, 947
ZrmI AGTACT 2 cut(s) 945, 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.