F-box FBD LRR-repeat protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g10110 FvH4_5g10110 FvH4_5g10120 FvH4_5g10120 FvH4_6g18740 |
| rosa_chinensis | RchiOBHm_Chr3g0473701 |
| rosa_laevigata | RLG00000004674 RLG00000004675 RLG00000023990 RLG00000023992 |
| rosa_multiflora | Rmu_co8411403.1_g000001 Rmu_sc0003069.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00266170 Rroxscaffold_6G00407920 Rroxscaffold_6G00407930 |
| rosa_rugosa | Rorug03G0134800 Rorug06G0492000 |
| rosa_samantha | Rh3BG213600 Rh7CG100200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 408, 1178, 1389 |
| AarI | CACCTGC | 1 cut(s) | 940 |
| Acc36I | ACCTGC | 2 cut(s) | 940, 1205 |
| Acc65I | GGTACC | 1 cut(s) | 1410 |
| AccB1I | GGYRCC | 1 cut(s) | 1410 |
| AccI | GTMKAC | 2 cut(s) | 255, 272 |
| AccII | CGCG | 1 cut(s) | 1329 |
| AciI | CCGC | 1 cut(s) | 1417 |
| AcsI | RAATTY | 5 cut(s) | 299, 814, 1028, 1082, 1190 |
| AcuI | CTGAAG | 4 cut(s) | 650, 1230, 1253, 1305 |
| AcyI | GRCGYC | 1 cut(s) | 169 |
| AfaI | GTAC | 3 cut(s) | 945, 1302, 1412 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 165, 709, 1423 |
| AflII | CTTAAG | 1 cut(s) | 1304 |
| AgeI | ACCGGT | 1 cut(s) | 1407 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 20, 26, 52, 58, 697, 729 |
| AluBI | AGCT | 5 cut(s) | 194, 832, 927, 995, 1208 |
| AluI | AGCT | 5 cut(s) | 194, 832, 927, 995, 1208 |
| Alw26I | GTCTC | 1 cut(s) | 1083 |
| Ama87I | CYCGRG | 1 cut(s) | 557 |
| AoxI | GGCC | 2 cut(s) | 1060, 1425 |
| ApeKI | GCWGC | 6 cut(s) | 201, 832, 977, 980, 1121, 1124 |
| ApoI | RAATTY | 5 cut(s) | 299, 814, 1028, 1082, 1190 |
| AsiGI | ACCGGT | 1 cut(s) | 1407 |
| Asp718I | GGTACC | 1 cut(s) | 1410 |
| AspLEI | GCGC | 2 cut(s) | 879, 1329 |
| AspS9I | GGNCC | 3 cut(s) | 156, 248, 1360 |
| AsuHPI | GGTGA | 5 cut(s) | 586, 606, 921, 1236, 1324 |
| AsuII | TTCGAA | 1 cut(s) | 499 |
| AvaI | CYCGRG | 1 cut(s) | 557 |
| AvaII | GGWCC | 3 cut(s) | 156, 248, 1360 |
| BanI | GGYRCC | 1 cut(s) | 1410 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 645, 677 |
| BbsI | GAAGAC | 2 cut(s) | 660, 908 |
| BbvI | GCAGC | 6 cut(s) | 188, 819, 964, 967, 1108, 1111 |
| BccI | CCATC | 4 cut(s) | 303, 606, 782, 1102 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 814, 848 |
| BcoDI | GTCTC | 1 cut(s) | 1083 |
| BfaI | CTAG | 2 cut(s) | 717, 947 |
| BfrI | CTTAAG | 1 cut(s) | 1304 |
| BfuAI | ACCTGC | 2 cut(s) | 940, 1205 |
| BglII | AGATCT | 2 cut(s) | 84, 384 |
| BisI | GCNGC | 6 cut(s) | 202, 833, 978, 981, 1122, 1125 |
| BlsI | GCNGC | 6 cut(s) | 203, 834, 979, 982, 1123, 1126 |
| BmcAI | AGTACT | 2 cut(s) | 945, 1302 |
| Bme18I | GGWCC | 3 cut(s) | 156, 248, 1360 |
| BmeT110I | CYCGRG | 1 cut(s) | 557 |
| BmgT120I | GGNCC | 3 cut(s) | 156, 248, 1360 |
| BmiI | GGNNCC | 4 cut(s) | 250, 1362, 1396, 1412 |
| BmsI | GCATC | 2 cut(s) | 600, 1108 |
| BpiI | GAAGAC | 2 cut(s) | 660, 908 |
| BpmI | CTGGAG | 3 cut(s) | 728, 1005, 1098 |
| Bpu14I | TTCGAA | 1 cut(s) | 499 |
| BpuEI | CTTGAG | 2 cut(s) | 587, 1238 |
| Bsa29I | ATCGAT | 1 cut(s) | 222 |
| BsaHI | GRCGYC | 1 cut(s) | 169 |
| BsaJI | CCNNGG | 1 cut(s) | 1422 |
| BsaWI | WCCGGW | 1 cut(s) | 1407 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 606, 636 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 165, 709, 1423 |
| Bse118I | RCCGGY | 2 cut(s) | 1058, 1407 |
| Bse1I | ACTGG | 3 cut(s) | 357, 745, 1081 |
| Bse3DI | GCAATG | 1 cut(s) | 382 |
| BseCI | ATCGAT | 1 cut(s) | 222 |
| BseDI | CCNNGG | 1 cut(s) | 1422 |
| BseGI | GGATG | 1 cut(s) | 1113 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 165, 709, 1423 |
| BseMI | GCAATG | 1 cut(s) | 382 |
| BseMII | CTCAG | 3 cut(s) | 911, 1160, 1335 |
| BseNI | ACTGG | 3 cut(s) | 357, 745, 1081 |
| BseRI | GAGGAG | 1 cut(s) | 1420 |
| BseXI | GCAGC | 6 cut(s) | 188, 819, 964, 967, 1108, 1111 |
| Bsh1236I | CGCG | 1 cut(s) | 1329 |
| BshFI | GGCC | 2 cut(s) | 1062, 1427 |
| BshNI | GGYRCC | 1 cut(s) | 1410 |
| BshTI | ACCGGT | 1 cut(s) | 1407 |
| BshVI | ATCGAT | 1 cut(s) | 222 |
| BsiHKCI | CYCGRG | 1 cut(s) | 557 |
| BsiSI | CCGG | 2 cut(s) | 1059, 1408 |
| BslFI | GGGAC | 5 cut(s) | 234, 376, 1438, 1462, 1486 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 165, 709, 1423 |
| BsmAI | GTCTC | 1 cut(s) | 1083 |
| BsmFI | GGGAC | 5 cut(s) | 234, 376, 1438, 1462, 1486 |
| BsnI | GGCC | 2 cut(s) | 1062, 1427 |
| BsoBI | CYCGRG | 1 cut(s) | 557 |
| Bsp119I | TTCGAA | 1 cut(s) | 499 |
| Bsp143I | GATC | 3 cut(s) | 84, 223, 384 |
| BspACI | CCGC | 1 cut(s) | 1417 |
| BspANI | GGCC | 2 cut(s) | 1062, 1427 |
| BspCNI | CTCAG | 3 cut(s) | 912, 1161, 1336 |
| BspDI | ATCGAT | 1 cut(s) | 222 |
| BspFNI | CGCG | 1 cut(s) | 1329 |
| BspHI | TCATGA | 1 cut(s) | 241 |
| BspLI | GGNNCC | 4 cut(s) | 250, 1362, 1396, 1412 |
| BspMI | ACCTGC | 2 cut(s) | 940, 1205 |
| BspQI | GCTCTTC | 1 cut(s) | 479 |
| BspT104I | TTCGAA | 1 cut(s) | 499 |
| BspT107I | GGYRCC | 1 cut(s) | 1410 |
| BspTI | CTTAAG | 1 cut(s) | 1304 |
| BsrDI | GCAATG | 1 cut(s) | 382 |
| BsrFI | RCCGGY | 2 cut(s) | 1058, 1407 |
| BsrI | ACTGG | 3 cut(s) | 357, 745, 1081 |
| BssAI | RCCGGY | 2 cut(s) | 1058, 1407 |
| BssECI | CCNNGG | 1 cut(s) | 1422 |
| BssMI | GATC | 3 cut(s) | 84, 223, 384 |
| BssNI | GRCGYC | 1 cut(s) | 169 |
| BssT1I | CCWWGG | 1 cut(s) | 1422 |
| Bst4CI | ACNGT | 2 cut(s) | 809, 843 |
| Bst6I | CTCTTC | 5 cut(s) | 394, 479, 1272, 1471, 1495 |
| BstACI | GRCGYC | 1 cut(s) | 169 |
| BstAFI | CTTAAG | 1 cut(s) | 1304 |
| BstBI | TTCGAA | 1 cut(s) | 499 |
| BstC8I | GCNNGC | 4 cut(s) | 761, 875, 1275, 1341 |
| BstDEI | CTNAG | 7 cut(s) | 53, 88, 583, 755, 920, 1169, 1344 |
| BstEII | GGTNACC | 1 cut(s) | 1312 |
| BstF5I | GGATG | 1 cut(s) | 1113 |
| BstFNI | CGCG | 1 cut(s) | 1329 |
| BstHHI | GCGC | 2 cut(s) | 879, 1329 |
| BstKTI | GATC | 3 cut(s) | 87, 226, 387 |
| BstMAI | GTCTC | 1 cut(s) | 1083 |
| BstMBI | GATC | 3 cut(s) | 84, 223, 384 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 829 |
| BstNSI | RCATGY | 2 cut(s) | 877, 1343 |
| BstPI | GGTNACC | 1 cut(s) | 1312 |
| BstUI | CGCG | 1 cut(s) | 1329 |
| BstV1I | GCAGC | 6 cut(s) | 188, 819, 964, 967, 1108, 1111 |
| BstV2I | GAAGAC | 2 cut(s) | 660, 908 |
| BstX2I | RGATCY | 2 cut(s) | 84, 384 |
| BstYI | RGATCY | 2 cut(s) | 84, 384 |
| Bsu15I | ATCGAT | 1 cut(s) | 222 |
| BsuRI | GGCC | 2 cut(s) | 1062, 1427 |
| BsuTUI | ATCGAT | 1 cut(s) | 222 |
| BtgZI | GCGATG | 1 cut(s) | 491 |
| BtsCI | GGATG | 1 cut(s) | 1113 |
| BtsI | GCAGTG | 2 cut(s) | 120, 551 |
| BtsIMutI | CAGTG | 3 cut(s) | 120, 551, 805 |
| BveI | ACCTGC | 2 cut(s) | 940, 1205 |
| Cac8I | GCNNGC | 4 cut(s) | 761, 875, 1275, 1341 |
| CciI | TCATGA | 1 cut(s) | 241 |
| CfoI | GCGC | 2 cut(s) | 879, 1329 |
| Cfr10I | RCCGGY | 2 cut(s) | 1058, 1407 |
| Cfr13I | GGNCC | 3 cut(s) | 156, 248, 1360 |
| ClaI | ATCGAT | 1 cut(s) | 222 |
| CseI | GACGC | 1 cut(s) | 158 |
| Csp6I | GTAC | 3 cut(s) | 944, 1301, 1411 |
| CspAI | ACCGGT | 1 cut(s) | 1407 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1177, 1212 |
| CviAII | CATG | 5 cut(s) | 227, 242, 849, 874, 1340 |
| CviQI | GTAC | 3 cut(s) | 944, 1301, 1411 |
| DdeI | CTNAG | 7 cut(s) | 53, 88, 583, 755, 920, 1169, 1344 |
| DpnI | GATC | 3 cut(s) | 86, 225, 386 |
| DpnII | GATC | 3 cut(s) | 84, 223, 384 |
| Eam1104I | CTCTTC | 5 cut(s) | 394, 479, 1272, 1471, 1495 |
| EarI | CTCTTC | 5 cut(s) | 394, 479, 1272, 1471, 1495 |
| Eco130I | CCWWGG | 1 cut(s) | 1422 |
| Eco147I | AGGCCT | 1 cut(s) | 1427 |
| Eco47I | GGWCC | 3 cut(s) | 156, 248, 1360 |
| Eco57I | CTGAAG | 4 cut(s) | 650, 1230, 1253, 1305 |
| Eco88I | CYCGRG | 1 cut(s) | 557 |
| Eco91I | GGTNACC | 1 cut(s) | 1312 |
| EcoO109I | RGGNCCY | 1 cut(s) | 248 |
| EcoO65I | GGTNACC | 1 cut(s) | 1312 |
| EcoRI | GAATTC | 1 cut(s) | 1028 |
| EcoT14I | CCWWGG | 1 cut(s) | 1422 |
| ErhI | CCWWGG | 1 cut(s) | 1422 |
| FaeI | CATG | 5 cut(s) | 230, 245, 852, 877, 1343 |
| FaqI | GGGAC | 5 cut(s) | 234, 376, 1438, 1462, 1486 |
| FatI | CATG | 5 cut(s) | 226, 241, 848, 873, 1339 |
| FblI | GTMKAC | 2 cut(s) | 255, 272 |
| Fnu4HI | GCNGC | 6 cut(s) | 202, 833, 978, 981, 1122, 1125 |
| FokI | GGATG | 1 cut(s) | 1120 |
| Fsp4HI | GCNGC | 6 cut(s) | 202, 833, 978, 981, 1122, 1125 |
| FspBI | CTAG | 2 cut(s) | 717, 947 |
| GlaI | GCGC | 2 cut(s) | 878, 1328 |
| GluI | GCNGC | 6 cut(s) | 202, 833, 978, 981, 1122, 1125 |
| GsuI | CTGGAG | 3 cut(s) | 728, 1005, 1098 |
| HaeIII | GGCC | 2 cut(s) | 1062, 1427 |
| HapII | CCGG | 2 cut(s) | 1059, 1408 |
| HgaI | GACGC | 1 cut(s) | 158 |
| HhaI | GCGC | 2 cut(s) | 879, 1329 |
| Hin1I | GRCGYC | 1 cut(s) | 169 |
| Hin1II | CATG | 5 cut(s) | 230, 245, 852, 877, 1343 |
| Hin6I | GCGC | 2 cut(s) | 877, 1327 |
| HinP1I | GCGC | 2 cut(s) | 877, 1327 |
| HpaII | CCGG | 2 cut(s) | 1059, 1408 |
| HphI | GGTGA | 5 cut(s) | 586, 606, 921, 1236, 1324 |
| Hpy166II | GTNNAC | 4 cut(s) | 256, 273, 551, 1244 |
| Hpy188I | TCNGA | 7 cut(s) | 107, 669, 855, 921, 1133, 1226, 1471 |
| Hpy188III | TCNNGA | 6 cut(s) | 242, 327, 559, 604, 717, 1255 |
| Hpy8I | GTNNAC | 4 cut(s) | 256, 273, 551, 1244 |
| Hpy99I | CGWCG | 2 cut(s) | 829, 1047 |
| HpyAV | CCTTC | 1 cut(s) | 239 |
| HpyCH4III | ACNGT | 2 cut(s) | 809, 843 |
| HpyCH4IV | ACGT | 1 cut(s) | 1045 |
| HpyCH4V | TGCA | 2 cut(s) | 375, 1155 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 829 |
| HpyF3I | CTNAG | 7 cut(s) | 53, 88, 583, 755, 920, 1169, 1344 |
| HpySE526I | ACGT | 1 cut(s) | 1045 |
| Hsp92I | GRCGYC | 1 cut(s) | 169 |
| Hsp92II | CATG | 5 cut(s) | 230, 245, 852, 877, 1343 |
| HspAI | GCGC | 2 cut(s) | 877, 1327 |
| KpnI | GGTACC | 1 cut(s) | 1414 |
| Kzo9I | GATC | 3 cut(s) | 84, 223, 384 |
| LguI | GCTCTTC | 1 cut(s) | 479 |
| LmnI | GCTCC | 3 cut(s) | 747, 829, 1400 |
| Lsp1109I | GCAGC | 6 cut(s) | 188, 819, 964, 967, 1108, 1111 |
| LweI | GCATC | 2 cut(s) | 600, 1108 |
| MaeI | CTAG | 2 cut(s) | 717, 947 |
| MaeII | ACGT | 1 cut(s) | 1045 |
| MaeIII | GTNAC | 7 cut(s) | 73, 234, 578, 1054, 1072, 1183, 1312 |
| MalI | GATC | 3 cut(s) | 86, 225, 386 |
| MboI | GATC | 3 cut(s) | 84, 223, 384 |
| MboII | GAAGA | 7 cut(s) | 381, 496, 665, 908, 1259, 1458, 1482 |
| MfeI | CAATTG | 3 cut(s) | 436, 783, 1000 |
| MflI | RGATCY | 2 cut(s) | 84, 384 |
| MmeI | TCCRAC | 3 cut(s) | 18, 1111, 1338 |
| MseI | TTAA | 8 cut(s) | 431, 882, 902, 1007, 1305, 1323, 1349, 1367 |
| MspCI | CTTAAG | 1 cut(s) | 1304 |
| MspI | CCGG | 2 cut(s) | 1059, 1408 |
| MunI | CAATTG | 3 cut(s) | 436, 783, 1000 |
| MvnI | CGCG | 1 cut(s) | 1329 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 829 |
| NdeII | GATC | 3 cut(s) | 84, 223, 384 |
| NlaIII | CATG | 5 cut(s) | 230, 245, 852, 877, 1343 |
| NlaIV | GGNNCC | 4 cut(s) | 250, 1362, 1396, 1412 |
| NmuCI | GTSAC | 2 cut(s) | 578, 1312 |
| NspI | RCATGY | 2 cut(s) | 877, 1343 |
| NspV | TTCGAA | 1 cut(s) | 499 |
| PaeI | GCATGC | 2 cut(s) | 877, 1343 |
| PaeR7I | CTCGAG | 1 cut(s) | 557 |
| PagI | TCATGA | 1 cut(s) | 241 |
| PaqCI | CACCTGC | 1 cut(s) | 940 |
| PceI | AGGCCT | 1 cut(s) | 1427 |
| PciSI | GCTCTTC | 1 cut(s) | 479 |
| PfeI | GAWTC | 4 cut(s) | 313, 330, 611, 619 |
| PinAI | ACCGGT | 1 cut(s) | 1407 |
| PkrI | GCNGC | 6 cut(s) | 203, 834, 979, 982, 1123, 1126 |
| PpuMI | RGGWCCY | 1 cut(s) | 248 |
| PsiI | TTATAA | 3 cut(s) | 408, 1178, 1389 |
| Psp5II | RGGWCCY | 1 cut(s) | 248 |
| PspEI | GGTNACC | 1 cut(s) | 1312 |
| PspN4I | GGNNCC | 4 cut(s) | 250, 1362, 1396, 1412 |
| PspPI | GGNCC | 3 cut(s) | 156, 248, 1360 |
| PspPPI | RGGWCCY | 1 cut(s) | 248 |
| PsuI | RGATCY | 2 cut(s) | 84, 384 |
| RsaI | GTAC | 3 cut(s) | 945, 1302, 1412 |
| RsaNI | GTAC | 3 cut(s) | 944, 1301, 1411 |
| SapI | GCTCTTC | 1 cut(s) | 479 |
| SaqAI | TTAA | 8 cut(s) | 431, 882, 902, 1007, 1305, 1323, 1349, 1367 |
| SatI | GCNGC | 6 cut(s) | 202, 833, 978, 981, 1122, 1125 |
| Sau3AI | GATC | 3 cut(s) | 84, 223, 384 |
| Sau96I | GGNCC | 3 cut(s) | 156, 248, 1360 |
| ScaI | AGTACT | 2 cut(s) | 945, 1302 |
| SfaNI | GCATC | 2 cut(s) | 600, 1108 |
| Sfr274I | CTCGAG | 1 cut(s) | 557 |
| SfuI | TTCGAA | 1 cut(s) | 499 |
| SinI | GGWCC | 3 cut(s) | 156, 248, 1360 |
| SlaI | CTCGAG | 1 cut(s) | 557 |
| SmlI | CTYRAG | 4 cut(s) | 557, 602, 1253, 1304 |
| SmoI | CTYRAG | 4 cut(s) | 557, 602, 1253, 1304 |
| SphI | GCATGC | 2 cut(s) | 877, 1343 |
| SseBI | AGGCCT | 1 cut(s) | 1427 |
| SsiI | CCGC | 1 cut(s) | 1417 |
| SspMI | CTAG | 2 cut(s) | 717, 947 |
| StuI | AGGCCT | 1 cut(s) | 1427 |
| StyI | CCWWGG | 1 cut(s) | 1422 |
| TaaI | ACNGT | 2 cut(s) | 809, 843 |
| TaiI | ACGT | 1 cut(s) | 1048 |
| TaqI | TCGA | 5 cut(s) | 222, 499, 558, 699, 1147 |
| TaqII | GACCGA | 1 cut(s) | 1331 |
| TatI | WGTACW | 2 cut(s) | 943, 1300 |
| TfiI | GAWTC | 4 cut(s) | 313, 330, 611, 619 |
| Tru1I | TTAA | 8 cut(s) | 431, 882, 902, 1007, 1305, 1323, 1349, 1367 |
| Tru9I | TTAA | 8 cut(s) | 431, 882, 902, 1007, 1305, 1323, 1349, 1367 |
| TscAI | CASTG | 3 cut(s) | 120, 558, 812 |
| TseFI | GTSAC | 2 cut(s) | 578, 1312 |
| TseI | GCWGC | 6 cut(s) | 201, 832, 977, 980, 1121, 1124 |
| Tsp45I | GTSAC | 2 cut(s) | 578, 1312 |
| TspDTI | ATGAA | 4 cut(s) | 230, 258, 337, 1210 |
| TspGWI | ACGGA | 2 cut(s) | 290, 842 |
| TspRI | CASTG | 3 cut(s) | 120, 558, 812 |
| Vha464I | CTTAAG | 1 cut(s) | 1304 |
| VpaK11BI | GGWCC | 3 cut(s) | 156, 248, 1360 |
| XapI | RAATTY | 5 cut(s) | 299, 814, 1028, 1082, 1190 |
| XbaI | TCTAGA | 1 cut(s) | 716 |
| XceI | RCATGY | 2 cut(s) | 877, 1343 |
| XhoI | CTCGAG | 1 cut(s) | 557 |
| XmiI | GTMKAC | 2 cut(s) | 255, 272 |
| XspI | CTAG | 2 cut(s) | 717, 947 |
| ZrmI | AGTACT | 2 cut(s) | 945, 1302 |