FvH4_6g18740

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
12351352 .. 12353693
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18740.t1

Sequence Viewer

Length: 1611 bp
ATGTCAGAAAAAATATTGATCGTGCTCCATCTTCTGGTATCTTATATAGTTGAATGCTTTTCTCATCTTAGTCGATACCTCAGATCCAAGAAACCCACTAATTATCAGAAGAAGAAGAAGAAGATGGATCAGTCGGACAAATTAAGCAACTTACCAACCGGTGTTACACAGAAAATCTTGTCATACTTACCTATCGACCAGGCAGTGAGGACAAGTATTTTATCTAGTGAGTGGAGGTCGACATGGTCTCGGCTTCCATATCTGGTGTTTGATGATCAAAGTGGATATGATATCAAAAAAGTTGTTAATCATGTGCTGTTACTTCATCGTGGCGGCATAGAGACTTTTAAGCTTTCTAATCTTGATGGTTCCGCTGATAGTGAAAATATTGATAAATGGATTGCTTATCTATCAAGAGAAAGGATCAAAGAGTTCGTACTGGAACATACCAAATGGGATCCCTATAATGTCTTTTCCTGCATCTTTTTATATAAAGGTTTGACTCGTTTAGAGTTGCACAATTGTTTGTTGAATCCTCCGGCGACGTTCAAAGGCTTCCGGATGTTGAAGAGACTTCATCTTAAGCACGTTGATGTGTCCGGAGATGTGTTGGGAAGACTAATTGCTTGCTGTCCTCAGCTTGAGAGAGTTATTCTATGTGACTTGAAGGGTATAGCTGATGTTACTATTTGTGCACCAAGCATACAGTTCCTTAAAGTTCAAGGCAGTTTTGAGGATGTTGTACTAGAGAAGACCTTTAATCTTGTTGATGTTTCAATTGACTGGAAACAAGGTTCCACAATCTGTTCTGGCAAATTGCTCAGGCATATTTTGCAGCTGCCTCGTATTGAAAGACTCACACTGCAGCGTAGCTTTCTAGAGTGTGCTGTTGGTTCCTTGACCAAGAAGCTACCTAAATCATGTCTGTCTCTGAAGTTTCTTTCGATAAGCATACGCTTGGATAATTCGGAGGAGATTTTAACTGCCATGCACCTTATGAGAAGCGCACCTGCTCTAGAAGAACTAGACATTGTGTTTCGAAAAGGAAAGGTGACTAATGATGGAGAATCAACCTATTGTTTAAGTGATGACAAACAGAATTGGGAATTCACCCAACTGCAACGAGTGAAAGTAATCTGCTTCTCTGGTATCAAAGCAGAAGTAGACTTCATCAAATTTCTGTTATTAACCTCACCTGGTCTTCAAGAACTAGAAATTTCGTTTGGCCAAGATATGAAAGGAGTGGACTTTTCTTGGTTAGATGACAACCAGAAGAATTCTGCATTCACTCAAGTACGAGTTGTGAAAGTTACTCGCCTCTCTGGTGTCAAAGCCGAAGTAGATTTCATCAGATTTCTGCTCTCAAATACTTCACAAAGGCTTGAGAGAGTGATTCTACAACCTTCTTCTACCGAAGTTTCTTGGGAATTATTTAAGTTATTGCTGGCGTTCAAACGCGATACATTACATGCAGATTTTAAGTTCTTGGACCCATCAAGTCCTGTCACTCCTGTGCAGGATTCTGACGACTCGTCTTCTGACCACAACTTTGATGCTGCCTCATCTTCTGACTCCGACTTTGATGATGATGATGATGATGAATTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

537

Amino Acids

61.17

Weight (kDa)

6.48

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 48 - 86 7.7e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 109 - 410 6.8e-17 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 130 - 344 1.7e-18 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1018
Acc36I ACCTGC 1 cut(s) 1018
AccB7I CCANNNNNTGG 1 cut(s) 34
AccI GTMKAC 2 cut(s) 239, 1164
AccII CGCG 1 cut(s) 1458
AccIII TCCGGA 2 cut(s) 558, 599
AciI CCGC 2 cut(s) 333, 372
AclWI GGATC 5 cut(s) 78, 135, 431, 452, 465
AcoI YGGCCR 1 cut(s) 1225
AcsI RAATTY 4 cut(s) 1106, 1175, 1215, 1276
AcuI CTGAAG 1 cut(s) 953
AfaI GTAC 3 cut(s) 438, 744, 1296
AfiI CCNNNNNNNGG 1 cut(s) 34
AflII CTTAAG 1 cut(s) 581
AgeI ACCGGT 1 cut(s) 158
AhdI GACNNNNNGTC 1 cut(s) 1531
AjnI CCWGG 2 cut(s) 198, 1195
AjuI GAANNNNNNNTTGG 2 cut(s) 1206, 1238
AleI CACNNNNGTG 1 cut(s) 1511
AloI GAACNNNNNNTCC 2 cut(s) 778, 810
AluBI AGCT 6 cut(s) 352, 640, 677, 838, 873, 910
AluI AGCT 6 cut(s) 352, 640, 677, 838, 873, 910
Alw21I GWGCWC 2 cut(s) 27, 697
Alw26I GTCTC 4 cut(s) 252, 335, 565, 933
Alw44I GTGCAC 1 cut(s) 693
AlwI GGATC 5 cut(s) 78, 135, 431, 452, 465
Aor13HI TCCGGA 2 cut(s) 558, 599
AoxI GGCC 1 cut(s) 1225
ApaLI GTGCAC 1 cut(s) 693
ApeKI GCWGC 4 cut(s) 835, 838, 865, 1556
ApoI RAATTY 4 cut(s) 1106, 1175, 1215, 1276
ArsI GACNNNNNNTTYG 4 cut(s) 1532, 1562, 1564, 1594
AsiGI ACCGGT 1 cut(s) 158
AspLEI GCGC 1 cut(s) 1007
AspS9I GGNCC 1 cut(s) 1489
AsuHPI GGTGA 3 cut(s) 1063, 1102, 1185
AsuII TTCGAA 1 cut(s) 1039
AvaII GGWCC 1 cut(s) 1489
BaeGI GKGCMC 1 cut(s) 697
BalI TGGCCA 1 cut(s) 1227
BamHI GGATCC 1 cut(s) 457
BbsI GAAGAC 4 cut(s) 622, 758, 1193, 1527
Bbv12I GWGCWC 2 cut(s) 27, 697
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 4 cut(s) 825, 847, 877, 1543
BccI CCATC 5 cut(s) 36, 118, 359, 1055, 1501
BcgI CGANNNNNNTGC 2 cut(s) 824, 858
BciT130I CCWGG 2 cut(s) 200, 1197
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 4 cut(s) 252, 335, 565, 933
BfaI CTAG 6 cut(s) 225, 746, 878, 1016, 1025, 1211
BfmI CTRYAG 1 cut(s) 863
BfrI CTTAAG 1 cut(s) 581
BfuAI ACCTGC 1 cut(s) 1018
BisI GCNGC 5 cut(s) 334, 836, 839, 866, 1557
BlsI GCNGC 5 cut(s) 335, 837, 840, 867, 1558
Bme1390I CCNGG 2 cut(s) 200, 1197
Bme18I GGWCC 1 cut(s) 1489
BmeRI GACNNNNNGTC 1 cut(s) 1531
BmgT120I GGNCC 1 cut(s) 1489
BmiI GGNNCC 5 cut(s) 370, 459, 796, 895, 1491
BmrFI CCNGG 2 cut(s) 200, 1197
BmsI GCATC 2 cut(s) 489, 1543
BpiI GAAGAC 4 cut(s) 622, 758, 1193, 1527
Bpu10I CCTNAGC 2 cut(s) 636, 821
Bpu14I TTCGAA 1 cut(s) 1039
BpuEI CTTGAG 3 cut(s) 662, 1275, 1403
BsaI GGTCTC 1 cut(s) 252
BsaWI WCCGGW 3 cut(s) 158, 558, 599
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 444, 788
BseAI TCCGGA 2 cut(s) 558, 599
BseBI CCWGG 2 cut(s) 200, 1197
BseGI GGATG 2 cut(s) 567, 742
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 3 cut(s) 94, 650, 835
BseNI ACTGG 2 cut(s) 444, 788
BseRI GAGGAG 1 cut(s) 986
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 4 cut(s) 825, 847, 877, 1543
BsgI GTGCAG 1 cut(s) 1535
Bsh1236I CGCG 1 cut(s) 1458
BshFI GGCC 1 cut(s) 1227
BshTI ACCGGT 1 cut(s) 158
BsiHKAI GWGCWC 2 cut(s) 27, 697
BsiSI CCGG 4 cut(s) 159, 539, 559, 600
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 4 cut(s) 252, 335, 565, 933
BsmI GAATGC 2 cut(s) 59, 1283
BsnI GGCC 1 cut(s) 1227
Bso31I GGTCTC 1 cut(s) 252
Bsp119I TTCGAA 1 cut(s) 1039
Bsp1286I GDGCHC 2 cut(s) 27, 697
Bsp13I TCCGGA 2 cut(s) 558, 599
Bsp143I GATC 6 cut(s) 18, 83, 127, 274, 423, 457
BspACI CCGC 2 cut(s) 333, 372
BspANI GGCC 1 cut(s) 1227
BspCNI CTCAG 3 cut(s) 93, 649, 834
BspEI TCCGGA 2 cut(s) 558, 599
BspFNI CGCG 1 cut(s) 1458
BspLI GGNNCC 5 cut(s) 370, 459, 796, 895, 1491
BspMAI CTGCAG 1 cut(s) 867
BspMI ACCTGC 1 cut(s) 1018
BspPI GGATC 5 cut(s) 78, 135, 431, 452, 465
BspT104I TTCGAA 1 cut(s) 1039
BspTI CTTAAG 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 2 cut(s) 444, 788
BssAI RCCGGY 1 cut(s) 158
BssMI GATC 6 cut(s) 18, 83, 127, 274, 423, 457
Bst2UI CCWGG 2 cut(s) 200, 1197
Bst4CI ACNGT 1 cut(s) 708
Bst6I CTCTTC 1 cut(s) 563
BstAFI CTTAAG 1 cut(s) 581
BstAPI GCANNNNNTGC 1 cut(s) 832
BstBI TTCGAA 1 cut(s) 1039
BstC8I GCNNGC 2 cut(s) 628, 1446
BstDEI CTNAG 4 cut(s) 68, 80, 636, 821
BstF5I GGATG 2 cut(s) 567, 742
BstFNI CGCG 1 cut(s) 1458
BstHHI GCGC 1 cut(s) 1007
BstKTI GATC 6 cut(s) 21, 86, 130, 277, 426, 460
BstMAI GTCTC 4 cut(s) 252, 335, 565, 933
BstMBI GATC 6 cut(s) 18, 83, 127, 274, 423, 457
BstMWI GCNNNNNNNGC 1 cut(s) 832
BstNI CCWGG 2 cut(s) 200, 1197
BstNSI RCATGY 1 cut(s) 1472
BstSCI CCNGG 2 cut(s) 198, 1195
BstSFI CTRYAG 1 cut(s) 863
BstSLI GKGCMC 1 cut(s) 697
BstUI CGCG 1 cut(s) 1458
BstV1I GCAGC 4 cut(s) 825, 847, 877, 1543
BstV2I GAAGAC 4 cut(s) 622, 758, 1193, 1527
BstX2I RGATCY 2 cut(s) 83, 457
BstYI RGATCY 2 cut(s) 83, 457
BsuRI GGCC 1 cut(s) 1227
BtsCI GGATG 2 cut(s) 567, 742
BtsI GCAGTG 2 cut(s) 210, 860
BtsIMutI CAGTG 2 cut(s) 210, 860
BveI ACCTGC 1 cut(s) 1018
Cac8I GCNNGC 2 cut(s) 628, 1446
CfoI GCGC 1 cut(s) 1007
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 1489
CsiI ACCWGGT 1 cut(s) 1195
Csp6I GTAC 3 cut(s) 437, 743, 1295
CspAI ACCGGT 1 cut(s) 158
CviAII CATG 5 cut(s) 243, 311, 921, 988, 1469
CviQI GTAC 3 cut(s) 437, 743, 1295
DdeI CTNAG 4 cut(s) 68, 80, 636, 821
DpnI GATC 6 cut(s) 20, 85, 129, 276, 425, 459
DpnII GATC 6 cut(s) 18, 83, 127, 274, 423, 457
DriI GACNNNNNGTC 1 cut(s) 1531
EaeI YGGCCR 1 cut(s) 1225
Eam1104I CTCTTC 1 cut(s) 563
Eam1105I GACNNNNNGTC 1 cut(s) 1531
EarI CTCTTC 1 cut(s) 563
Eco31I GGTCTC 1 cut(s) 252
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 1489
Eco57I CTGAAG 1 cut(s) 953
EcoRI GAATTC 2 cut(s) 1106, 1276
EcoRII CCWGG 2 cut(s) 198, 1195
EcoRV GATATC 1 cut(s) 292
FaeI CATG 5 cut(s) 246, 314, 924, 991, 1472
FatI CATG 5 cut(s) 242, 310, 920, 987, 1468
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 2 cut(s) 239, 1164
Fnu4HI GCNGC 5 cut(s) 334, 836, 839, 866, 1557
FokI GGATG 2 cut(s) 574, 749
Fsp4HI GCNGC 5 cut(s) 334, 836, 839, 866, 1557
FspBI CTAG 6 cut(s) 225, 746, 878, 1016, 1025, 1211
GlaI GCGC 1 cut(s) 1006
GluI GCNGC 5 cut(s) 334, 836, 839, 866, 1557
HaeIII GGCC 1 cut(s) 1227
HapII CCGG 4 cut(s) 159, 539, 559, 600
HhaI GCGC 1 cut(s) 1007
Hin1II CATG 5 cut(s) 246, 314, 924, 991, 1472
Hin6I GCGC 1 cut(s) 1005
HinP1I GCGC 1 cut(s) 1005
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 8 cut(s) 502, 532, 855, 1067, 1393, 1520, 1529, 1571
HpaII CCGG 4 cut(s) 159, 539, 559, 600
HphI GGTGA 3 cut(s) 1063, 1102, 1185
Hpy166II GTNNAC 4 cut(s) 240, 695, 1165, 1246
Hpy188III TCNNGA 7 cut(s) 362, 414, 559, 600, 878, 1016, 1205
Hpy8I GTNNAC 4 cut(s) 240, 695, 1165, 1246
Hpy99I CGWCG 1 cut(s) 547
HpyAV CCTTC 2 cut(s) 661, 1413
HpyCH4III ACNGT 1 cut(s) 708
HpyCH4IV ACGT 2 cut(s) 545, 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 832
HpyF3I CTNAG 4 cut(s) 68, 80, 636, 821
HpySE526I ACGT 2 cut(s) 545, 588
Hsp92II CATG 5 cut(s) 246, 314, 924, 991, 1472
HspAI GCGC 1 cut(s) 1005
Kpn2I TCCGGA 2 cut(s) 558, 599
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 6 cut(s) 18, 83, 127, 274, 423, 457
LmnI GCTCC 1 cut(s) 30
Lsp1109I GCAGC 4 cut(s) 825, 847, 877, 1543
LweI GCATC 2 cut(s) 489, 1543
MabI ACCWGGT 1 cut(s) 1195
MaeI CTAG 6 cut(s) 225, 746, 878, 1016, 1025, 1211
MaeII ACGT 2 cut(s) 545, 588
MaeIII GTNAC 7 cut(s) 163, 318, 659, 682, 1051, 1309, 1504
MalI GATC 6 cut(s) 20, 85, 129, 276, 425, 459
MboI GATC 6 cut(s) 18, 83, 127, 274, 423, 457
MfeI CAATTG 2 cut(s) 520, 777
MflI RGATCY 2 cut(s) 83, 457
MhlI GDGCHC 2 cut(s) 27, 697
MlsI TGGCCA 1 cut(s) 1227
MluNI TGGCCA 1 cut(s) 1227
MlyI GAGTC 4 cut(s) 496, 849, 1523, 1565
MmeI TCCRAC 2 cut(s) 114, 1599
Mox20I TGGCCA 1 cut(s) 1227
MroI TCCGGA 2 cut(s) 558, 599
MscI TGGCCA 1 cut(s) 1227
MslI CAYNNNNRTG 2 cut(s) 591, 1511
Msp20I TGGCCA 1 cut(s) 1227
MspA1I CMGCKG 2 cut(s) 374, 838
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 4 cut(s) 159, 539, 559, 600
MspR9I CCNGG 2 cut(s) 200, 1197
MunI CAATTG 2 cut(s) 520, 777
Mva1269I GAATGC 2 cut(s) 59, 1283
MvaI CCWGG 2 cut(s) 200, 1197
MvnI CGCG 1 cut(s) 1458
MwoI GCNNNNNNNGC 1 cut(s) 832
NdeII GATC 6 cut(s) 18, 83, 127, 274, 423, 457
NlaIII CATG 5 cut(s) 246, 314, 924, 991, 1472
NlaIV GGNNCC 5 cut(s) 370, 459, 796, 895, 1491
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 3 cut(s) 659, 1051, 1504
NspI RCATGY 1 cut(s) 1472
NspV TTCGAA 1 cut(s) 1039
OliI CACNNNNGTG 1 cut(s) 1511
PaqCI CACCTGC 1 cut(s) 1018
PctI GAATGC 2 cut(s) 59, 1283
PfeI GAWTC 4 cut(s) 532, 1067, 1393, 1520
PflFI GACNNNGTC 1 cut(s) 244
PflMI CCANNNNNTGG 1 cut(s) 34
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 5 cut(s) 335, 837, 840, 867, 1558
PleI GAGTC 4 cut(s) 496, 849, 1523, 1565
PpsI GAGTC 4 cut(s) 496, 849, 1523, 1565
Psp6I CCWGG 2 cut(s) 198, 1195
PspGI CCWGG 2 cut(s) 198, 1195
PspN4I GGNNCC 5 cut(s) 370, 459, 796, 895, 1491
PspPI GGNCC 1 cut(s) 1489
PstI CTGCAG 1 cut(s) 867
PsuI RGATCY 2 cut(s) 83, 457
PsyI GACNNNGTC 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 838
RsaI GTAC 3 cut(s) 438, 744, 1296
RsaNI GTAC 3 cut(s) 437, 743, 1295
RseI CAYNNNNRTG 2 cut(s) 591, 1511
SalI GTCGAC 1 cut(s) 238
SatI GCNGC 5 cut(s) 334, 836, 839, 866, 1557
Sau3AI GATC 6 cut(s) 18, 83, 127, 274, 423, 457
Sau96I GGNCC 1 cut(s) 1489
SchI GAGTC 4 cut(s) 496, 849, 1523, 1565
ScrFI CCNGG 2 cut(s) 200, 1197
SduI GDGCHC 2 cut(s) 27, 697
SexAI ACCWGGT 1 cut(s) 1195
SfaNI GCATC 2 cut(s) 489, 1543
SfcI CTRYAG 1 cut(s) 863
SfuI TTCGAA 1 cut(s) 1039
SinI GGWCC 1 cut(s) 1489
SmiMI CAYNNNNRTG 2 cut(s) 591, 1511
SmlI CTYRAG 4 cut(s) 581, 641, 1290, 1382
SmoI CTYRAG 4 cut(s) 581, 641, 1290, 1382
SsiI CCGC 2 cut(s) 333, 372
SspI AATATT 2 cut(s) 15, 388
SspMI CTAG 6 cut(s) 225, 746, 878, 1016, 1025, 1211
StyD4I CCNGG 2 cut(s) 198, 1195
TaaI ACNGT 1 cut(s) 708
TaiI ACGT 2 cut(s) 548, 591
TaqI TCGA 5 cut(s) 73, 195, 239, 944, 1039
TatI WGTACW 1 cut(s) 742
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 4 cut(s) 532, 1067, 1393, 1520
TscAI CASTG 2 cut(s) 210, 867
TseFI GTSAC 3 cut(s) 659, 1051, 1504
TseI GCWGC 4 cut(s) 835, 838, 865, 1556
Tsp45I GTSAC 3 cut(s) 659, 1051, 1504
TspDTI ATGAA 5 cut(s) 314, 566, 1159, 1250, 1336
TspRI CASTG 2 cut(s) 210, 867
Tth111I GACNNNGTC 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 581
VneI GTGCAC 1 cut(s) 693
VpaK11BI GGWCC 1 cut(s) 1489
XapI RAATTY 4 cut(s) 1106, 1175, 1215, 1276
XbaI TCTAGA 2 cut(s) 877, 1015
XceI RCATGY 1 cut(s) 1472
XmiI GTMKAC 2 cut(s) 239, 1164
XspI CTAG 6 cut(s) 225, 746, 878, 1016, 1025, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.