FvH4_5g12910

protein At3g15000, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005120
Physical Location & Seq
Forward (+)
7290432 .. 7293980
3549 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12910.t1

Sequence Viewer

Length: 1497 bp
ATGGCGCAGAACCTTCTCCGCCTCCGCCGAAGCGTCGCGACTATCCACCGTGCTCTATCCGCCACCCCCTCCCTACCCTCCGTACCTCGCTCTTCCCCTTACTCTTCCTCCGCCGTTGTCCAACCATCTCCGACCTTCCAGATCCAATTCCAATCTCGATCGTTCAGGTCGTCCTCCATCTCTTTCGCACGGCCCAATTCCAGCCCTGGTAACTACAACCAAATTGAGGAGATTGGCCCCGACACCATTCTCTTCGAAGGCTGCGATTACAACCACTGGCTTATTGTCATGGATTTCCCCAAAGATAACAAGCCTCCTCCCCAGGAGATGGTCAGGACTTACGAGGAGACCTGTGCTAGAGGCTTGAATATCAGTGTGGAAGAGGCAAAAAAGAAAATTTATGCTTGTAGCACAACAACATATACGGGCTTTCAGGTGTTGATGAGCGAGGAAGAGTCAGAGAAGTTCAATGGTGTACCTGGAGTTATTTTTGTGTTGCCGGATTCTTACATTGATCCGCAGAACAAGGAGTATGGAGGAGACAAATATGATAATGGCGTAATTACACACAGACCGCCCCCATTTCAGTATGAGAGGCAGGGCTCAAGATACCGTGATCGTAACAGATACGATCGACCAATGCCAAATCAGCAAGGGAATTCCTCGTATGGCCAACCGGGGTCTCCACAAGGTGGAGGAAACTATAGGGCTTCACAACCGGGGTCTCCACAGCAGACTTATGGCCCACCCGGACAAGGGGAAAACAGAGGTCACACATCAGTTAATTCTCCTGGAGGGAGGGATGCATATCAGCAGGGTAGAGATCCAATACCTTCATATCAGGGCAATTACAACCAACAGGCACAAAGGAACGTTCCACAAGGAGATCAGAGTACATACGCTCCTCCTAGTCAAGGGGAACATAGGGGTAGTGAGAGGACTTCCGGTTATGGGCAAGGACCGAGCTCTGGATCATATGGGCAAGGACCGAGCTCTGGATCATATGGGCAAGGACCGAGCTCTGGATCATATGGGCGAGGGCCAAGTGCTGGGTCTTATGGGCAAGGACCAAGTGCTGGGTCTTATGGGCAAGGACCAAGTGCTGGGACTGCTGGGTCTTATGGGCAAGGGCCGAGCGCTGGATCATATGGTCAAGGGCCGAGCGCTGGGTCATATGGGCAAGGGCCGAGCGCTGGGTCTTATGGGCAAGGGCCGAGCGCTCAAGGACCGAGTGCTGGGAGTGCTGGGTCTTATGGGCAAGGACCGAGTGCCGGGAGTTATGGGCAAGGGCCGAGTGCCGGGAGTTATGGCCAAGGACCCATTGCCGGGGATTATGGGGAAGGACCAAGAGCTGGTGCTCACGTCCAAGGACCCAGTTCTGGCTACCCTGGGCCTGGAAATCAGAATTTCACCCAAGGGGAGCCAAGGAGCATGCAAGGGGAACAAACAAACTATGCACCCATGGGACAGACAGGAGCTGACCGAGGAAGATATTAG

Protein Analysis

499

Amino Acids

52.26

Weight (kDa)

8.2

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 90 - 183 1.1e-36 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1114
AccB7I CCANNNNNTGG 6 cut(s) 328, 692, 1049, 1076, 1103, 1352
AccII CGCG 1 cut(s) 38
AciI CCGC 6 cut(s) 19, 25, 60, 111, 518, 575
AclI AACGTT 1 cut(s) 873
AclWI GGATC 7 cut(s) 136, 509, 818, 979, 1006, 1033, 1150
AcoI YGGCCR 2 cut(s) 670, 1309
AcsI RAATTY 3 cut(s) 396, 658, 1405
AdeI CACNNNGTG 1 cut(s) 692
AfaI GTAC 3 cut(s) 84, 477, 895
AfeI AGCGCT 4 cut(s) 1138, 1165, 1192, 1219
AgsI TTSAA 2 cut(s) 367, 469
AjiI CACGTC 1 cut(s) 1363
AjnI CCWGG 6 cut(s) 205, 321, 478, 790, 1387, 1393
AluBI AGCT 5 cut(s) 966, 993, 1020, 1352, 1478
AluI AGCT 5 cut(s) 966, 993, 1020, 1352, 1478
Alw21I GWGCWC 5 cut(s) 55, 968, 995, 1022, 1360
Alw26I GTCTC 4 cut(s) 341, 534, 687, 729
AlwI GGATC 7 cut(s) 136, 509, 818, 979, 1006, 1033, 1150
AlwNI CAGNNNCTG 1 cut(s) 1478
Aor51HI AGCGCT 4 cut(s) 1138, 1165, 1192, 1219
ApeKI GCWGC 1 cut(s) 261
ApoI RAATTY 3 cut(s) 396, 658, 1405
AspLEI GCGC 5 cut(s) 7, 1139, 1166, 1193, 1220
AsuC2I CCSGG 6 cut(s) 678, 720, 750, 1273, 1300, 1327
AsuHPI GGTGA 1 cut(s) 1402
AsuII TTCGAA 1 cut(s) 255
BalI TGGCCA 2 cut(s) 672, 1311
BanII GRGCYC 4 cut(s) 605, 968, 995, 1022
Bbv12I GWGCWC 5 cut(s) 55, 968, 995, 1022, 1360
BbvI GCAGC 1 cut(s) 248
BccI CCATC 3 cut(s) 133, 185, 322
BceAI ACGGC 2 cut(s) 98, 206
BciT130I CCWGG 6 cut(s) 207, 323, 480, 792, 1389, 1395
BcnI CCSGG 6 cut(s) 678, 720, 750, 1273, 1300, 1327
BcoDI GTCTC 4 cut(s) 341, 534, 687, 729
BfaI CTAG 2 cut(s) 357, 909
BfmI CTRYAG 1 cut(s) 703
BfoI RGCGCY 4 cut(s) 1140, 1167, 1194, 1221
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 1363
BmiI GGNNCC 4 cut(s) 238, 1318, 1372, 1422
BmrI ACTGGG 1 cut(s) 1368
BmsI GCATC 1 cut(s) 793
BmuI ACTGGG 1 cut(s) 1368
BpmI CTGGAG 2 cut(s) 501, 813
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 2 cut(s) 589, 1206
BpuMI CCSGG 6 cut(s) 678, 720, 750, 1273, 1300, 1327
BsaBI GATNNNNATC 1 cut(s) 807
BsaI GGTCTC 3 cut(s) 341, 687, 729
BsaWI WCCGGW 1 cut(s) 944
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 886, 916
Bse1I ACTGG 2 cut(s) 281, 1374
Bse3DI GCAATG 1 cut(s) 1320
Bse8I GATNNNNATC 1 cut(s) 807
BseBI CCWGG 6 cut(s) 207, 323, 480, 792, 1389, 1395
BseGI GGATG 1 cut(s) 808
BseJI GATNNNNATC 1 cut(s) 807
BseMI GCAATG 1 cut(s) 1320
BseNI ACTGG 2 cut(s) 281, 1374
BseRI GAGGAG 5 cut(s) 242, 306, 359, 552, 894
BseXI GCAGC 1 cut(s) 248
BseYI CCCAGC 8 cut(s) 1049, 1076, 1103, 1112, 1166, 1193, 1235, 1244
Bsh1236I CGCG 1 cut(s) 38
Bsh1285I CGRYCG 2 cut(s) 161, 634
BsiEI CGRYCG 2 cut(s) 161, 634
BsiHKAI GWGCWC 5 cut(s) 55, 968, 995, 1022, 1360
BsiSI CCGG 8 cut(s) 500, 677, 719, 750, 945, 1272, 1299, 1326
BslFI GGGAC 2 cut(s) 1120, 1479
BsmAI GTCTC 4 cut(s) 341, 534, 687, 729
BsmFI GGGAC 2 cut(s) 1120, 1479
Bso31I GGTCTC 3 cut(s) 341, 687, 729
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 6 cut(s) 55, 605, 968, 995, 1022, 1360
Bsp19I CCATGG 1 cut(s) 1461
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 6 cut(s) 19, 25, 60, 111, 518, 575
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 4 cut(s) 238, 1318, 1372, 1422
BspPI GGATC 7 cut(s) 136, 509, 818, 979, 1006, 1033, 1150
BspQI GCTCTTC 1 cut(s) 97
BspT104I TTCGAA 1 cut(s) 255
BspTNI GGTCTC 3 cut(s) 341, 687, 729
BsrDI GCAATG 1 cut(s) 1320
BsrI ACTGG 2 cut(s) 281, 1374
BssT1I CCWWGG 5 cut(s) 1312, 1366, 1414, 1424, 1461
Bst2UI CCWGG 6 cut(s) 207, 323, 480, 792, 1389, 1395
Bst4CI ACNGT 2 cut(s) 50, 614
Bst6I CTCTTC 5 cut(s) 97, 109, 257, 375, 447
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 1433
BstDSI CCRYGG 1 cut(s) 1461
BstENI CCTNNNNNAGG 1 cut(s) 912
BstF5I GGATG 1 cut(s) 808
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 4 cut(s) 1140, 1167, 1194, 1221
BstHHI GCGC 5 cut(s) 7, 1139, 1166, 1193, 1220
BstMAI GTCTC 4 cut(s) 341, 534, 687, 729
BstMCI CGRYCG 2 cut(s) 161, 634
BstMWI GCNNNNNNNGC 4 cut(s) 59, 649, 1109, 1241
BstNI CCWGG 6 cut(s) 207, 323, 480, 792, 1389, 1395
BstNSI RCATGY 1 cut(s) 1435
BstSFI CTRYAG 1 cut(s) 703
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 248
BstX2I RGATCY 2 cut(s) 141, 823
BstYI RGATCY 2 cut(s) 141, 823
BtgI CCRYGG 1 cut(s) 1461
BtrI CACGTC 1 cut(s) 1363
BtsCI GGATG 1 cut(s) 808
BtsIMutI CAGTG 2 cut(s) 274, 379
BtuMI TCGCGA 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 1433
CaiI CAGNNNCTG 1 cut(s) 1478
CfoI GCGC 5 cut(s) 7, 1139, 1166, 1193, 1220
CseI GACGC 1 cut(s) 22
Csp6I GTAC 3 cut(s) 83, 476, 894
CviAII CATG 3 cut(s) 289, 1432, 1462
CviQI GTAC 3 cut(s) 83, 476, 894
DraIII CACNNNGTG 1 cut(s) 692
DrdI GACNNNNNNGTC 1 cut(s) 1114
DseDI GACNNNNNNGTC 1 cut(s) 1114
EaeI YGGCCR 2 cut(s) 670, 1309
Eam1104I CTCTTC 5 cut(s) 97, 109, 257, 375, 447
EarI CTCTTC 5 cut(s) 97, 109, 257, 375, 447
EciI GGCGGA 4 cut(s) 8, 14, 49, 100
Ecl136II GAGCTC 3 cut(s) 966, 993, 1020
Eco130I CCWWGG 5 cut(s) 1312, 1366, 1414, 1424, 1461
Eco24I GRGCYC 4 cut(s) 605, 968, 995, 1022
Eco31I GGTCTC 3 cut(s) 341, 687, 729
Eco47III AGCGCT 4 cut(s) 1138, 1165, 1192, 1219
Eco53kI GAGCTC 3 cut(s) 966, 993, 1020
EcoICRI GAGCTC 3 cut(s) 966, 993, 1020
EcoNI CCTNNNNNAGG 1 cut(s) 912
EcoO109I RGGNCCY 2 cut(s) 1316, 1370
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 6 cut(s) 205, 321, 478, 790, 1387, 1393
EcoT14I CCWWGG 5 cut(s) 1312, 1366, 1414, 1424, 1461
EcoT22I ATGCAT 1 cut(s) 808
EcoT38I GRGCYC 4 cut(s) 605, 968, 995, 1022
ErhI CCWWGG 5 cut(s) 1312, 1366, 1414, 1424, 1461
FaeI CATG 3 cut(s) 292, 1435, 1465
FaqI GGGAC 2 cut(s) 1120, 1479
FatI CATG 3 cut(s) 288, 1431, 1461
FauNDI CATATG 5 cut(s) 976, 1003, 1030, 1147, 1174
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 1 cut(s) 815
FriOI GRGCYC 4 cut(s) 605, 968, 995, 1022
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 2 cut(s) 357, 909
GlaI GCGC 5 cut(s) 6, 1138, 1165, 1192, 1219
GluI GCNGC 1 cut(s) 262
GsaI CCCAGC 8 cut(s) 1053, 1080, 1107, 1116, 1170, 1197, 1239, 1248
GsuI CTGGAG 2 cut(s) 501, 813
HaeII RGCGCY 4 cut(s) 1140, 1167, 1194, 1221
HapII CCGG 8 cut(s) 500, 677, 719, 750, 945, 1272, 1299, 1326
HgaI GACGC 1 cut(s) 22
HhaI GCGC 5 cut(s) 7, 1139, 1166, 1193, 1220
Hin1II CATG 3 cut(s) 292, 1435, 1465
Hin6I GCGC 5 cut(s) 5, 1137, 1164, 1191, 1218
HinP1I GCGC 5 cut(s) 5, 1137, 1164, 1191, 1218
HinfI GANTC 2 cut(s) 455, 503
HpaII CCGG 8 cut(s) 500, 677, 719, 750, 945, 1272, 1299, 1326
HphI GGTGA 1 cut(s) 1402
Hpy166II GTNNAC 1 cut(s) 476
Hpy188I TCNGA 4 cut(s) 132, 460, 891, 1404
Hpy188III TCNNGA 8 cut(s) 37, 139, 156, 334, 606, 969, 996, 1023
Hpy8I GTNNAC 1 cut(s) 476
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 5 cut(s) 23, 145, 251, 843, 1334
HpyCH4III ACNGT 2 cut(s) 50, 614
HpyCH4IV ACGT 2 cut(s) 873, 1362
HpyCH4V TGCA 3 cut(s) 806, 1435, 1457
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 649, 1109, 1241
HpySE526I ACGT 2 cut(s) 873, 1362
Hsp92II CATG 3 cut(s) 292, 1435, 1465
HspAI GCGC 5 cut(s) 5, 1137, 1164, 1191, 1218
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 4 cut(s) 907, 1420, 1428, 1475
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 1 cut(s) 793
MaeI CTAG 2 cut(s) 357, 909
MaeII ACGT 2 cut(s) 873, 1362
MaeIII GTNAC 3 cut(s) 209, 620, 770
MboII GAAGA 5 cut(s) 84, 96, 244, 392, 464
MflI RGATCY 2 cut(s) 141, 823
MhlI GDGCHC 6 cut(s) 55, 605, 968, 995, 1022, 1360
MlsI TGGCCA 2 cut(s) 672, 1311
MluCI AATT 9 cut(s) 146, 196, 222, 396, 561, 658, 784, 847, 1405
MluNI TGGCCA 2 cut(s) 672, 1311
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 2 cut(s) 145, 155
Mox20I TGGCCA 2 cut(s) 672, 1311
Mph1103I ATGCAT 1 cut(s) 808
MscI TGGCCA 2 cut(s) 672, 1311
MseI TTAA 1 cut(s) 783
Msp20I TGGCCA 2 cut(s) 672, 1311
MspI CCGG 8 cut(s) 500, 677, 719, 750, 945, 1272, 1299, 1326
MvaI CCWGG 6 cut(s) 207, 323, 480, 792, 1389, 1395
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 4 cut(s) 59, 649, 1109, 1241
NciI CCSGG 6 cut(s) 678, 720, 750, 1273, 1300, 1327
NcoI CCATGG 1 cut(s) 1461
NdeI CATATG 5 cut(s) 976, 1003, 1030, 1147, 1174
NlaIII CATG 3 cut(s) 292, 1435, 1465
NlaIV GGNNCC 4 cut(s) 238, 1318, 1372, 1422
NmeAIII GCCGAG 5 cut(s) 1158, 1185, 1212, 1239, 1317
NmuCI GTSAC 1 cut(s) 770
NruI TCGCGA 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 1 cut(s) 1435
NspV TTCGAA 1 cut(s) 255
PaeI GCATGC 1 cut(s) 1435
PasI CCCWGGG 1 cut(s) 1388
PciSI GCTCTTC 1 cut(s) 97
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 261
PfeI GAWTC 1 cut(s) 503
PflMI CCANNNNNTGG 6 cut(s) 328, 692, 1049, 1076, 1103, 1352
PfoI TCCNGGA 1 cut(s) 790
PkrI GCNGC 1 cut(s) 263
Ple19I CGATCG 2 cut(s) 161, 634
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PpuMI RGGWCCY 2 cut(s) 1316, 1370
Psp124BI GAGCTC 3 cut(s) 968, 995, 1022
Psp1406I AACGTT 1 cut(s) 873
Psp5II RGGWCCY 2 cut(s) 1316, 1370
Psp6I CCWGG 6 cut(s) 205, 321, 478, 790, 1387, 1393
PspFI CCCAGC 8 cut(s) 1049, 1076, 1103, 1112, 1166, 1193, 1235, 1244
PspGI CCWGG 6 cut(s) 205, 321, 478, 790, 1387, 1393
PspN4I GGNNCC 4 cut(s) 238, 1318, 1372, 1422
PspPPI RGGWCCY 2 cut(s) 1316, 1370
PstNI CAGNNNCTG 1 cut(s) 1478
PsuI RGATCY 2 cut(s) 141, 823
PvuI CGATCG 2 cut(s) 161, 634
RruI TCGCGA 1 cut(s) 38
RsaI GTAC 3 cut(s) 84, 477, 895
RsaNI GTAC 3 cut(s) 83, 476, 894
SacI GAGCTC 3 cut(s) 968, 995, 1022
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 783
SatI GCNGC 1 cut(s) 262
SchI GAGTC 1 cut(s) 464
SduI GDGCHC 6 cut(s) 55, 605, 968, 995, 1022, 1360
SfaNI GCATC 1 cut(s) 793
SfcI CTRYAG 1 cut(s) 703
SfuI TTCGAA 1 cut(s) 255
SmlI CTYRAG 2 cut(s) 604, 1221
SmoI CTYRAG 2 cut(s) 604, 1221
SphI GCATGC 1 cut(s) 1435
Sse9I AATT 9 cut(s) 146, 196, 222, 396, 561, 658, 784, 847, 1405
SsiI CCGC 6 cut(s) 19, 25, 60, 111, 518, 575
SspMI CTAG 2 cut(s) 357, 909
SstI GAGCTC 3 cut(s) 968, 995, 1022
StyI CCWWGG 5 cut(s) 1312, 1366, 1414, 1424, 1461
TaaI ACNGT 2 cut(s) 50, 614
TaiI ACGT 2 cut(s) 876, 1365
TaqI TCGA 3 cut(s) 157, 255, 634
TaqII GACCGA 6 cut(s) 976, 1003, 1030, 1243, 1279, 1497
TasI AATT 9 cut(s) 146, 196, 222, 396, 561, 658, 784, 847, 1405
TatI WGTACW 1 cut(s) 893
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 1 cut(s) 783
Tru9I TTAA 1 cut(s) 783
TscAI CASTG 2 cut(s) 281, 379
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 1 cut(s) 261
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 1 cut(s) 825
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 281, 379
Van91I CCANNNNNTGG 6 cut(s) 328, 692, 1049, 1076, 1103, 1352
XagI CCTNNNNNAGG 1 cut(s) 912
XapI RAATTY 3 cut(s) 396, 658, 1405
XceI RCATGY 1 cut(s) 1435
XspI CTAG 2 cut(s) 357, 909
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.