Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005120

Physical Location & Seq

Genomic Coordinates Forward (+)

1569735 .. 1573076

Gene Structure 3342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCGCAGAACCTTCTCCGCCTCCGGCGAAGCCTAAGCAGCAGCACCAGCCTCGTTGCAAATCTCCACCGTTCTCTATCGTCCACCTCCGCACTCTCCTCTGTCCCACGCTCCTCTTCCCCTTCCCCTTCCTCCTCCTCCTCCGCCGTTGTTCAATCTCTCCAATTCCGATTCCAATCTCGATCATTCAGGTCGTCCTCCTTCTCTTCTGCACGGCCGCCTTACGGTAGCAACAACCAAAATGACGAGATTGGCCCCGACACCATACTCTTCGAAGGCTGCGATTACAACCACTGGCTTATCGTCATGGATTTCCCCAGAGATAACAAGCCTTCTCCCGAAGAGATGGTCAGAACTTATGAGGAAACCTGTGCCAGAGGCTTGAATATCAGGATGATCGAGTCAAATGAAGTTGCTTGGGACACACAGTCCCATTTGCACATATGTGGAAGAGGCAAAAAGAAAATTTATGCTTGTAGCACAACAACGTATACAGGCTTTCAGGTGTTGATGACTGAGGAAGAGTCTGAGAAGTTTAATGGTGTACCTGGAGTTATTTTTGTGTTGCCTGATTCTTACATTGATCCACAAAACAAGGAGTATGGAGGAGACAAATATGAAAATGGGAAAATTACACCCAGACCGCCTCCATTTCAGTATGAGAGGCAGGGCTCAAGATACCGTGATCGTAACAGATACGAGCGACAAGGACCAATGCCAAATCAGCAAGGGAATCCCTCGTATGGCCAACAGGGTTCTCCACAAGGTGGAGGAAACTATAGGACTTCACAAAATTATCCACACCAGACTTATGCCCCACCAGGACAAGGGGAACACAGAGGTCATACACCAGTTAATTCTCCTGGAGGAAGGGACGCATATCAGCCAGGTAGAGATCCAACTCCTTCATATCAGGGCAATTACAACCAACAGGTGCAAGGGAACAGACCACAAGGAGAGCAGAGTACATATGCTCCTCCTGGTCAAGGGGAATATAGGGGTAATGATGGGACTTATGGTTATGGGCAAGGTCCAAGCTCTGGAACTCATGGACATGGGAAGATATTAGTGATGTGTCATTCGCATTACCGCGAATATGGATCAAGGAAGGACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1900865 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

372

Amino Acids

41.48

Weight (kDa)

8.81

Isoelectric Point (pI)

61.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	96 - 206	3.5e-28	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20020 AT4G20020
fragaria_vesca	FvH4_5g12910 FvH4_5g12910 FvH4_5g12910 FvH4_5g12910
malus_domestica	MD08G1237000.v1.1 MD15G1428800.v1.1
prunus_persica	Prupe.1G574100_v2.0.a1 Prupe.1G574100_v2.0.a1
pyrus_communis	pycom08g20520 pycom15g37970
rosa_chinensis	RchiOBHm_Chr5g0083371 RchiOBHm_Chr5g0083421 RchiOBHm_Chr5g0083491 RchiOBHm_Chr5g0083551
rosa_laevigata	RLG00000037031
rosa_multiflora	Rmu_sc0001444.1_g000012 Rmu_sc0002245.1_g000044
rosa_roxburghii	Rroxscaffold_1G00001030 Rroxscaffold_1G00001120
rosa_rugosa	Rorug05G0484400 Rorug05G0484500
rosa_samantha	Rh5AG533900 Rh5BG561700 Rh5BG561900 Rh5CG584100 Rh5CG584300 Rh5DG570400
rosa_wichuraiana	Rw5G049890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	767, 1040
AccI	GTMKAC	1 cut(s)	491
AccII	CGCG	1 cut(s)	1092
AciI	CCGC	6 cut(s)	19, 90, 144, 218, 644, 1090
AclWI	GGATC	3 cut(s)	578, 890, 1108
AcoI	YGGCCR	2 cut(s)	215, 745
AcsI	RAATTY	1 cut(s)	465
AdeI	CACNNNGTG	1 cut(s)	767
AfaI	GTAC	2 cut(s)	546, 967
AfiI	CCNNNNNNNGG	6 cut(s)	224, 743, 767, 827, 986, 1040
AgsI	TTSAA	2 cut(s)	155, 385
AhdI	GACNNNNNGTC	1 cut(s)	427
AjnI	CCWGG	5 cut(s)	547, 820, 862, 886, 979
AleI	CACNNNNGTG	1 cut(s)	444
AluBI	AGCT	1 cut(s)	1038
AluI	AGCT	1 cut(s)	1038
Alw26I	GTCTC	1 cut(s)	603
AlwI	GGATC	3 cut(s)	578, 890, 1108
AoxI	GGCC	3 cut(s)	215, 253, 745
ApeKI	GCWGC	3 cut(s)	39, 42, 279
ApoI	RAATTY	1 cut(s)	465
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	254, 710, 1031
AsuII	TTCGAA	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	710, 1031
BalI	TGGCCA	1 cut(s)	747
BanII	GRGCYC	1 cut(s)	674
BbvI	GCAGC	3 cut(s)	51, 54, 266
BccI	CCATC	2 cut(s)	340, 1001
BceAI	ACGGC	2 cut(s)	131, 230
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	5 cut(s)	549, 822, 864, 888, 981
BcoDI	GTCTC	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	778
BisI	GCNGC	4 cut(s)	40, 43, 218, 280
BlsI	GCNGC	4 cut(s)	41, 44, 219, 281
Bme1390I	CCNGG	5 cut(s)	549, 822, 864, 888, 981
Bme18I	GGWCC	2 cut(s)	710, 1031
BmeRI	GACNNNNNGTC	1 cut(s)	427
BmgT120I	GGNCC	3 cut(s)	254, 710, 1031
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	5 cut(s)	549, 822, 864, 888, 981
BpmI	CTGGAG	2 cut(s)	570, 885
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	658
BsaBI	GATNNNNATC	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	958, 988
Bsc4I	CCNNNNNNNGG	6 cut(s)	224, 743, 767, 827, 986, 1040
Bse1I	ACTGG	2 cut(s)	299, 851
Bse8I	GATNNNNATC	1 cut(s)	175
BseBI	CCWGG	5 cut(s)	549, 822, 864, 888, 981
BseGI	GGATG	1 cut(s)	399
BseJI	GATNNNNATC	1 cut(s)	175
BseLI	CCNNNNNNNGG	6 cut(s)	224, 743, 767, 827, 986, 1040
BseMII	CTCAG	2 cut(s)	507, 519
BseNI	ACTGG	2 cut(s)	299, 851
BseRI	GAGGAG	7 cut(s)	88, 103, 124, 127, 130, 621, 966
BseX3I	CGGCCG	1 cut(s)	215
BseXI	GCAGC	3 cut(s)	51, 54, 266
BsgI	GTGCAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	1092
Bsh1285I	CGRYCG	1 cut(s)	218
BshFI	GGCC	3 cut(s)	217, 255, 747
BsiEI	CGRYCG	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	5 cut(s)	89, 415, 434, 887, 1024
BslI	CCNNNNNNNGG	6 cut(s)	224, 743, 767, 827, 986, 1040
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	5 cut(s)	89, 415, 434, 887, 1024
BsnI	GGCC	3 cut(s)	217, 255, 747
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	6 cut(s)	182, 396, 583, 685, 895, 1100
BspACI	CCGC	6 cut(s)	19, 90, 144, 218, 644, 1090
BspANI	GGCC	3 cut(s)	217, 255, 747
BspCNI	CTCAG	2 cut(s)	508, 520
BspFNI	CGCG	1 cut(s)	1092
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	3 cut(s)	578, 890, 1108
BspT104I	TTCGAA	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	299, 851
BssMI	GATC	6 cut(s)	182, 396, 583, 685, 895, 1100
BssNAI	GTATAC	1 cut(s)	492
Bst1107I	GTATAC	1 cut(s)	492
Bst2UI	CCWGG	5 cut(s)	549, 822, 864, 888, 981
Bst4CI	ACNGT	4 cut(s)	71, 227, 429, 683
Bst6I	CTCTTC	6 cut(s)	121, 211, 275, 336, 445, 516
BstBI	TTCGAA	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	35, 516, 528
BstENI	CCTNNNNNAGG	1 cut(s)	984
BstF5I	GGATG	1 cut(s)	399
BstFNI	CGCG	1 cut(s)	1092
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	6 cut(s)	185, 399, 586, 688, 898, 1103
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	6 cut(s)	182, 396, 583, 685, 895, 1100
BstMCI	CGRYCG	1 cut(s)	218
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 48, 724
BstNI	CCWGG	5 cut(s)	549, 822, 864, 888, 981
BstSCI	CCNGG	5 cut(s)	547, 820, 862, 886, 979
BstSFI	CTRYAG	1 cut(s)	778
BstUI	CGCG	1 cut(s)	1092
BstV1I	GCAGC	3 cut(s)	51, 54, 266
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
BstZ17I	GTATAC	1 cut(s)	492
BstZI	CGGCCG	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	217, 255, 747
BtsCI	GGATG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	292
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	254, 710, 1031
CseI	GACGC	1 cut(s)	884
Csp6I	GTAC	2 cut(s)	545, 966
CviAII	CATG	3 cut(s)	307, 1049, 1055
CviQI	GTAC	2 cut(s)	545, 966
DdeI	CTNAG	3 cut(s)	35, 516, 528
DpnI	GATC	6 cut(s)	184, 398, 585, 687, 897, 1102
DpnII	GATC	6 cut(s)	182, 396, 583, 685, 895, 1100
DraIII	CACNNNGTG	1 cut(s)	767
DriI	GACNNNNNGTC	1 cut(s)	427
EaeI	YGGCCR	2 cut(s)	215, 745
EagI	CGGCCG	1 cut(s)	215
Eam1104I	CTCTTC	6 cut(s)	121, 211, 275, 336, 445, 516
Eam1105I	GACNNNNNGTC	1 cut(s)	427
EarI	CTCTTC	6 cut(s)	121, 211, 275, 336, 445, 516
EciI	GGCGGA	2 cut(s)	8, 133
EclXI	CGGCCG	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	674
Eco47I	GGWCC	2 cut(s)	710, 1031
Eco52I	CGGCCG	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	984
EcoRII	CCWGG	5 cut(s)	547, 820, 862, 886, 979
EcoT38I	GRGCYC	1 cut(s)	674
FaeI	CATG	3 cut(s)	310, 1052, 1058
FaqI	GGGAC	5 cut(s)	89, 415, 434, 887, 1024
FatI	CATG	3 cut(s)	306, 1048, 1054
FauNDI	CATATG	2 cut(s)	443, 970
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	4 cut(s)	40, 43, 218, 280
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	4 cut(s)	40, 43, 218, 280
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	40, 43, 218, 280
GsuI	CTGGAG	2 cut(s)	570, 885
HaeIII	GGCC	3 cut(s)	217, 255, 747
HapII	CCGG	1 cut(s)	25
HgaI	GACGC	1 cut(s)	884
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	310, 1052, 1058
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	5 cut(s)	171, 401, 524, 572, 733
HpaII	CCGG	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	84, 492, 545
Hpy188I	TCNGA	3 cut(s)	170, 353, 529
Hpy188III	TCNNGA	5 cut(s)	180, 338, 391, 675, 1041
Hpy8I	GTNNAC	3 cut(s)	84, 492, 545
HpyAV	CCTTC	9 cut(s)	23, 132, 138, 211, 269, 342, 864, 915, 1102
HpyCH4III	ACNGT	4 cut(s)	71, 227, 429, 683
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	4 cut(s)	59, 212, 439, 937
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 48, 724
HpyF3I	CTNAG	3 cut(s)	35, 516, 528
HpySE526I	ACGT	1 cut(s)	488
Hsp92II	CATG	3 cut(s)	310, 1052, 1058
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	6 cut(s)	182, 396, 583, 685, 895, 1100
LmnI	GCTCC	2 cut(s)	116, 979
Lsp1109I	GCAGC	3 cut(s)	51, 54, 266
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	6 cut(s)	184, 398, 585, 687, 897, 1102
MboI	GATC	6 cut(s)	182, 396, 583, 685, 895, 1100
MboII	GAAGA	7 cut(s)	108, 198, 262, 353, 462, 533, 1072
MflI	RGATCY	1 cut(s)	895
MhlI	GDGCHC	1 cut(s)	674
MlsI	TGGCCA	1 cut(s)	747
MluCI	AATT	6 cut(s)	164, 465, 630, 793, 856, 919
MluNI	TGGCCA	1 cut(s)	747
MlyI	GAGTC	2 cut(s)	410, 533
MmeI	TCCRAC	1 cut(s)	923
Mox20I	TGGCCA	1 cut(s)	747
MscI	TGGCCA	1 cut(s)	747
MseI	TTAA	2 cut(s)	537, 855
MslI	CAYNNNNRTG	2 cut(s)	444, 1053
Msp20I	TGGCCA	1 cut(s)	747
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	5 cut(s)	549, 822, 864, 888, 981
MvaI	CCWGG	5 cut(s)	549, 822, 864, 888, 981
MvnI	CGCG	1 cut(s)	1092
MwoI	GCNNNNNNNGC	3 cut(s)	39, 48, 724
NdeI	CATATG	2 cut(s)	443, 970
NdeII	GATC	6 cut(s)	182, 396, 583, 685, 895, 1100
NlaIII	CATG	3 cut(s)	310, 1052, 1058
NlaIV	GGNNCC	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	273
OliI	CACNNNNGTG	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	171, 572, 733
PflMI	CCANNNNNTGG	2 cut(s)	767, 1040
PfoI	TCCNGGA	1 cut(s)	862
PkrI	GCNGC	4 cut(s)	41, 44, 219, 281
PleI	GAGTC	2 cut(s)	409, 532
PpsI	GAGTC	2 cut(s)	409, 532
Psp6I	CCWGG	5 cut(s)	547, 820, 862, 886, 979
PspGI	CCWGG	5 cut(s)	547, 820, 862, 886, 979
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	3 cut(s)	254, 710, 1031
PsuI	RGATCY	1 cut(s)	895
RsaI	GTAC	2 cut(s)	546, 967
RsaNI	GTAC	2 cut(s)	545, 966
RseI	CAYNNNNRTG	2 cut(s)	444, 1053
SaqAI	TTAA	2 cut(s)	537, 855
SatI	GCNGC	4 cut(s)	40, 43, 218, 280
Sau3AI	GATC	6 cut(s)	182, 396, 583, 685, 895, 1100
Sau96I	GGNCC	3 cut(s)	254, 710, 1031
SchI	GAGTC	2 cut(s)	410, 533
ScrFI	CCNGG	5 cut(s)	549, 822, 864, 888, 981
SduI	GDGCHC	1 cut(s)	674
SfcI	CTRYAG	1 cut(s)	778
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	2 cut(s)	710, 1031
SmiMI	CAYNNNNRTG	2 cut(s)	444, 1053
SmlI	CTYRAG	1 cut(s)	673
SmoI	CTYRAG	1 cut(s)	673
Sse9I	AATT	6 cut(s)	164, 465, 630, 793, 856, 919
SsiI	CCGC	6 cut(s)	19, 90, 144, 218, 644, 1090
StyD4I	CCNGG	5 cut(s)	547, 820, 862, 886, 979
TaaI	ACNGT	4 cut(s)	71, 227, 429, 683
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	3 cut(s)	181, 273, 399
TasI	AATT	6 cut(s)	164, 465, 630, 793, 856, 919
TatI	WGTACW	1 cut(s)	965
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	3 cut(s)	171, 572, 733
Tru1I	TTAA	2 cut(s)	537, 855
Tru9I	TTAA	2 cut(s)	537, 855
TscAI	CASTG	1 cut(s)	299
TseI	GCWGC	3 cut(s)	39, 42, 279
TspDTI	ATGAA	3 cut(s)	423, 633, 897
TspRI	CASTG	1 cut(s)	299
Van91I	CCANNNNNTGG	2 cut(s)	767, 1040
VpaK11BI	GGWCC	2 cut(s)	710, 1031
XagI	CCTNNNNNAGG	1 cut(s)	984
XapI	RAATTY	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.