Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005120

Physical Location & Seq

Genomic Coordinates Reverse (-)

89085084 .. 89086845

Gene Structure 1762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG561900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCGCAGAACCTTCTCCGCCTCCGGCGAAGCCTAAGCAGCAGCCTCGTCGCAAATCTCCACCGTTCTCTATCGTCCACCTCCGCACTCTCCTCTGTCCCACGCTCCTCTTCCCCTTCCCCTTCCTCCTCCTCCTCCCCCGCCGTTGTTCAATCTCTCCAATTCCGATTCCAATCTCGATCATTCAGGTCGTCCTCCTTCTCTTCTGCACGGCCGCCTTACGGTAGCAACAACCAAAATGACGAGATTGGCCCCGACACCATACTCTTCGAAGGCTGCGATTACAACCACTGGCTTATCGTCATGGACTTCCCCAGAGATAACAAGCCTTCTCCCGAAGAGATGTTCAGAACTTATGAGGAAACCTGTGCCAGAGGCTTGAATATCAGTGTGGAAGAGGCAAAAAAGAAAATTTATGCTTGTAGCACAACAACGTATACAGGCTTTCAGGTGTTGATGACTGAGGAAGAGTCTGAGAAGTTTAATGGTAATTTCATAGCACTTTATGTTACCTTCAATCATCCTGAGATTCTTTTCAAAAAGTCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1900865 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.62

Weight (kDa)

8.46

Isoelectric Point (pI)

85.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	95 - 163	2.9e-24	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20020 AT4G20020
fragaria_vesca	FvH4_5g12910 FvH4_5g12910 FvH4_5g12910 FvH4_5g12910
malus_domestica	MD08G1237000.v1.1 MD15G1428800.v1.1
prunus_persica	Prupe.1G574100_v2.0.a1 Prupe.1G574100_v2.0.a1
pyrus_communis	pycom08g20520 pycom15g37970
rosa_chinensis	RchiOBHm_Chr5g0083371 RchiOBHm_Chr5g0083421 RchiOBHm_Chr5g0083491 RchiOBHm_Chr5g0083551
rosa_laevigata	RLG00000037031
rosa_multiflora	Rmu_sc0001444.1_g000012 Rmu_sc0002245.1_g000044
rosa_roxburghii	Rroxscaffold_1G00001030 Rroxscaffold_1G00001120
rosa_rugosa	Rorug05G0484400 Rorug05G0484500
rosa_samantha	Rh5AG533900 Rh5BG561700 Rh5BG561900 Rh5CG584100 Rh5CG584300 Rh5DG570400
rosa_wichuraiana	Rw5G049890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	437
AciI	CCGC	4 cut(s)	19, 84, 141, 215
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	4 cut(s)	152, 382, 517, 538
AoxI	GGCC	2 cut(s)	212, 250
ApeKI	GCWGC	3 cut(s)	39, 42, 276
ApoI	RAATTY	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	251
AsuII	TTCGAA	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	51, 54, 263
BceAI	ACGGC	2 cut(s)	128, 227
BcgI	CGANNNNNNTGC	4 cut(s)	28, 31, 62, 65
BisI	GCNGC	4 cut(s)	40, 43, 215, 277
BlsI	GCNGC	4 cut(s)	41, 44, 216, 278
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	253
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	172
BseGI	GGATG	1 cut(s)	520
BseJI	GATNNNNATC	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	3 cut(s)	453, 465, 516
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	5 cut(s)	82, 97, 118, 121, 124
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	51, 54, 263
BsgI	GTGCAG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	214, 252
BsiEI	CGRYCG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	214, 252
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	179
BspACI	CCGC	4 cut(s)	19, 84, 141, 215
BspANI	GGCC	2 cut(s)	214, 252
BspCNI	CTCAG	3 cut(s)	454, 466, 517
BspLI	GGNNCC	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	296
BssMI	GATC	1 cut(s)	179
BssNAI	GTATAC	1 cut(s)	438
Bst1107I	GTATAC	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	65, 224
Bst6I	CTCTTC	6 cut(s)	115, 208, 272, 333, 390, 462
BstBI	TTCGAA	1 cut(s)	270
BstDEI	CTNAG	4 cut(s)	35, 462, 474, 525
BstF5I	GGATG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	179
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	51, 54, 263
BstZ17I	GTATAC	1 cut(s)	438
BstZI	CGGCCG	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	214, 252
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	2 cut(s)	289, 394
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	251
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	9 cut(s)	33, 45, 214, 252, 276, 295, 328, 378, 444
CviKI_1	RGCY	9 cut(s)	33, 45, 214, 252, 276, 295, 328, 378, 444
DdeI	CTNAG	4 cut(s)	35, 462, 474, 525
DpnI	GATC	1 cut(s)	181
DpnII	GATC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	212
EagI	CGGCCG	1 cut(s)	212
Eam1104I	CTCTTC	6 cut(s)	115, 208, 272, 333, 390, 462
EarI	CTCTTC	6 cut(s)	115, 208, 272, 333, 390, 462
EciI	GGCGGA	1 cut(s)	8
EclXI	CGGCCG	1 cut(s)	212
Eco52I	CGGCCG	1 cut(s)	212
FaeI	CATG	1 cut(s)	307
FaiI	YATR	7 cut(s)	263, 305, 357, 417, 438, 497, 507
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	40, 43, 215, 277
FokI	GGATG	1 cut(s)	507
Fsp4HI	GCNGC	4 cut(s)	40, 43, 215, 277
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	40, 43, 215, 277
HaeIII	GGCC	2 cut(s)	214, 252
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	307
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	168, 470, 529
HpaII	CCGG	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	78, 438
Hpy188I	TCNGA	3 cut(s)	167, 350, 475
Hpy188III	TCNNGA	4 cut(s)	177, 335, 524, 546
Hpy8I	GTNNAC	2 cut(s)	78, 438
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	7 cut(s)	23, 126, 132, 208, 266, 339, 523
HpyCH4III	ACNGT	2 cut(s)	65, 224
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	4 cut(s)	35, 462, 474, 525
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	1 cut(s)	307
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	179
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	9 cut(s)	38, 172, 277, 328, 379, 385, 426, 434, 537
Lsp1109I	GCAGC	3 cut(s)	51, 54, 263
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	1 cut(s)	181
MboI	GATC	1 cut(s)	179
MboII	GAAGA	6 cut(s)	102, 195, 259, 350, 407, 479
MluCI	AATT	3 cut(s)	161, 411, 490
MlyI	GAGTC	1 cut(s)	479
MseI	TTAA	1 cut(s)	483
MspI	CCGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	39
NdeII	GATC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	168, 529
PkrI	GCNGC	4 cut(s)	41, 44, 216, 278
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	4 cut(s)	40, 43, 215, 277
Sau3AI	GATC	1 cut(s)	179
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	479
SetI	ASST	7 cut(s)	15, 83, 191, 368, 437, 453, 515
SfuI	TTCGAA	1 cut(s)	270
Sse9I	AATT	3 cut(s)	161, 411, 490
SsiI	CCGC	4 cut(s)	19, 84, 141, 215
TaaI	ACNGT	2 cut(s)	65, 224
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	178, 270
TasI	AATT	3 cut(s)	161, 411, 490
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	168, 529
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	2 cut(s)	296, 394
TseI	GCWGC	3 cut(s)	39, 42, 276
TspDTI	ATGAA	1 cut(s)	484
TspRI	CASTG	2 cut(s)	296, 394
XapI	RAATTY	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.