RchiOBHm_Chr5g0083371

protein At3g15000, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
89014021 .. 89017503
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35752

Sequence Viewer

Length: 1419 bp
ATGGCGCAGAACCTTCTCCGCCTCCGGCGAAGCCTAAGCAGCAGCCTCGTCGCAAATCTCCACCGCTCTCTATCGGCCACCTCCGCACTCTCCTCTGTCCCACGCTCCTCTTCCCCTTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGTTGTTCAATCTCTCCAATTCCGATTCCAATCTCGATCATTCAGGTCATCCTCCTTCTCTTCTGCACGGCCGCCTTACGGTAGCAACAACCAAAATGACGAGATTGGCCCCGACACCATACTCTTCGAAGGCTGCGATTACAACCACTGGCTCATCGTCATGGATTTCCCCAGAGATAACAAGCCTTCTCCAGAAGAGATGGTCAGAACTTATGAGGAAACCTGTGCTAGAGGCTTGAATATCAGTGTGGAAGAGGCAAAAACGAAAATTTATGCTTGTAGCACAACAACGTATACAGGCTTTCAGGTGTTGATGACTGAGGAAGAGTCTGAGAAGTTTAATGGTGTACCTGGAGTTATTTTTGTGTTGCCCGATTCTTACATTGATCCACAAAACAAGGAGTATGGAGGAGACAAATATGATAACGGGAAAATTACAGCCAGACCGCCCCCATTTCAGTATGAGAGGCAGGGCTCAAGATACCGTGATCGTAACAGATACGAGCGACAAGGACCAATGCCAAATCAGCAAGGGAATCCCTCGTATGGCCAACAGGGTTCTCCACAAGGTGGAGGAAACTATAGGACTTCACAAAATTATCCACACCAGACTTATGCCCCACCAGGACAAGGGGAACACAGAGGTCATACACCAGTTAATTCTCCTGGAGGAAGGGACGCATATCAGCCAGGTAGAGGTCCAACTCCTTCATATCAGGGCAATTACAACCAACAGGTGCAAGGGAACAGACCACAAGGAGAGCAGAGTACATATGCTCCTCCTGGTCAAGGGGAATATAGGGGTAATGATGGGACTTATGGTTATGGGCAAGCTCCAAGCTCTGGAACTCATGGACATGGTTTGAGTGGGCTTCAAGGTCCGGGAACAGGTGGATCTTATGGGCAAGGACCGAGTGGTGGATCTTATGGGCAAGGACCGAGTGGTGGATCTTATGGACAAGGACCAAGTGGTGGAGGTTATGGGCAAGGACCAAGTGCCGCAGGTTATGGGCAAGGACCGAGTGCCGCAGGTTATGGTCAAGGACCGAGTGCCGGAAGTTATGGCCAAGGATCGAGATCTGGAGCTTCTGGACAAGGACCCGTATCTAGTGCTCAAGTCCAAGGACCCAGTGCTGGCTACCCTGGGCATGGAGATCAGAGTTTCACCCAAGAGGAGCCAAGGAGAATGCAAGGAGAACAAACAAACTATGCATACATGGGACAGACAGGAACTGACCAAGGAAGATATTAG

Protein Analysis

472

Amino Acids

49.99

Weight (kDa)

7.69

Isoelectric Point (pI)

60.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 103 - 196 1e-36 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1160, 1187
AccB7I CCANNNNNTGG 3 cut(s) 737, 1010, 1139
AccBSI CCGCTC 1 cut(s) 66
AccI GTMKAC 1 cut(s) 461
AciI CCGC 8 cut(s) 19, 64, 84, 165, 239, 614, 1167, 1194
AclWI GGATC 5 cut(s) 548, 1069, 1096, 1123, 1246
AcoI YGGCCR 4 cut(s) 75, 236, 715, 1231
AcsI RAATTY 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 737
AfaI GTAC 2 cut(s) 516, 937
AgsI TTSAA 3 cut(s) 176, 406, 1043
AjnI CCWGG 6 cut(s) 517, 790, 832, 856, 949, 1309
AluBI AGCT 3 cut(s) 1001, 1008, 1253
AluI AGCT 3 cut(s) 1001, 1008, 1253
Alw21I GWGCWC 1 cut(s) 1282
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 5 cut(s) 548, 1069, 1096, 1123, 1246
AlwNI CAGNNNCTG 1 cut(s) 1400
AoxI GGCC 5 cut(s) 75, 236, 274, 715, 1231
ApeKI GCWGC 3 cut(s) 39, 42, 300
ApoI RAATTY 1 cut(s) 435
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 1050
AsuHPI GGTGA 1 cut(s) 1324
AsuII TTCGAA 1 cut(s) 294
BalI TGGCCA 2 cut(s) 717, 1233
BanII GRGCYC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 1282
BbvI GCAGC 3 cut(s) 51, 54, 287
BccI CCATC 2 cut(s) 361, 971
BceAI ACGGC 2 cut(s) 152, 251
BcgI CGANNNNNNTGC 4 cut(s) 28, 31, 62, 65
BciT130I CCWGG 6 cut(s) 519, 792, 834, 858, 951, 1311
BcnI CCSGG 1 cut(s) 1050
BcoDI GTCTC 1 cut(s) 573
BfaI CTAG 2 cut(s) 396, 1275
BfmI CTRYAG 1 cut(s) 748
BfuAI ACCTGC 2 cut(s) 1160, 1187
BglII AGATCT 1 cut(s) 1244
BisI GCNGC 6 cut(s) 40, 43, 239, 301, 1167, 1194
BlsI GCNGC 6 cut(s) 41, 44, 240, 302, 1168, 1195
Bme1390I CCNGG 7 cut(s) 519, 792, 834, 858, 951, 1050, 1311
BmiI GGNNCC 4 cut(s) 277, 1267, 1294, 1344
BmrFI CCNGG 7 cut(s) 519, 792, 834, 858, 951, 1050, 1311
BmrI ACTGGG 1 cut(s) 1290
BmuI ACTGGG 1 cut(s) 1290
BpmI CTGGAG 4 cut(s) 342, 540, 855, 1269
Bpu10I CCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 628, 1266
BpuMI CCSGG 1 cut(s) 1050
BsaBI GATNNNNATC 2 cut(s) 196, 1243
BsaJI CCNNGG 6 cut(s) 1234, 1288, 1309, 1310, 1346, 1405
BsaXI ACNNNNNCTCC 2 cut(s) 928, 958
Bse1I ACTGG 3 cut(s) 320, 821, 1296
Bse8I GATNNNNATC 2 cut(s) 196, 1243
BseBI CCWGG 6 cut(s) 519, 792, 834, 858, 951, 1311
BseDI CCNNGG 6 cut(s) 1234, 1288, 1309, 1310, 1346, 1405
BseGI GGATG 1 cut(s) 215
BseJI GATNNNNATC 2 cut(s) 196, 1243
BseMII CTCAG 2 cut(s) 477, 489
BseNI ACTGG 3 cut(s) 320, 821, 1296
BseX3I CGGCCG 1 cut(s) 236
BseXI GCAGC 3 cut(s) 51, 54, 287
BsgI GTGCAG 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 239
BshFI GGCC 5 cut(s) 77, 238, 276, 717, 1233
BsiEI CGRYCG 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 1282
BsiSI CCGG 3 cut(s) 25, 1049, 1221
BslFI GGGAC 4 cut(s) 83, 857, 994, 1401
BsmAI GTCTC 1 cut(s) 573
BsmFI GGGAC 4 cut(s) 83, 857, 994, 1401
BsmI GAATGC 1 cut(s) 1359
BsnI GGCC 5 cut(s) 77, 238, 276, 717, 1233
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 644, 1282
Bsp143I GATC 9 cut(s) 203, 553, 655, 1061, 1088, 1115, 1238, 1244, 1321
BspACI CCGC 8 cut(s) 19, 64, 84, 165, 239, 614, 1167, 1194
BspANI GGCC 5 cut(s) 77, 238, 276, 717, 1233
BspCNI CTCAG 2 cut(s) 478, 490
BspLI GGNNCC 4 cut(s) 277, 1267, 1294, 1344
BspMI ACCTGC 2 cut(s) 1160, 1187
BspPI GGATC 5 cut(s) 548, 1069, 1096, 1123, 1246
BspT104I TTCGAA 1 cut(s) 294
BsrBI CCGCTC 1 cut(s) 66
BsrI ACTGG 3 cut(s) 320, 821, 1296
BssECI CCNNGG 6 cut(s) 1234, 1288, 1309, 1310, 1346, 1405
BssMI GATC 9 cut(s) 203, 553, 655, 1061, 1088, 1115, 1238, 1244, 1321
BssNAI GTATAC 1 cut(s) 462
BssT1I CCWWGG 4 cut(s) 1234, 1288, 1346, 1405
Bst1107I GTATAC 1 cut(s) 462
Bst2UI CCWGG 6 cut(s) 519, 792, 834, 858, 951, 1311
Bst4CI ACNGT 2 cut(s) 248, 653
Bst6I CTCTTC 6 cut(s) 115, 232, 296, 357, 414, 486
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 999, 1303
BstDEI CTNAG 3 cut(s) 35, 486, 498
BstENI CCTNNNNNAGG 1 cut(s) 954
BstF5I GGATG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 9 cut(s) 206, 556, 658, 1064, 1091, 1118, 1241, 1247, 1324
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 9 cut(s) 203, 553, 655, 1061, 1088, 1115, 1238, 1244, 1321
BstMCI CGRYCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 3 cut(s) 39, 83, 694
BstNI CCWGG 6 cut(s) 519, 792, 834, 858, 951, 1311
BstSCI CCNGG 7 cut(s) 517, 790, 832, 856, 949, 1048, 1309
BstSFI CTRYAG 1 cut(s) 748
BstV1I GCAGC 3 cut(s) 51, 54, 287
BstX2I RGATCY 4 cut(s) 1061, 1088, 1115, 1244
BstYI RGATCY 4 cut(s) 1061, 1088, 1115, 1244
BstZ17I GTATAC 1 cut(s) 462
BstZI CGGCCG 1 cut(s) 236
BsuRI GGCC 5 cut(s) 77, 238, 276, 717, 1233
BtsCI GGATG 1 cut(s) 215
BtsIMutI CAGTG 3 cut(s) 313, 418, 1303
BveI ACCTGC 2 cut(s) 1160, 1187
Cac8I GCNNGC 2 cut(s) 999, 1303
CaiI CAGNNNCTG 1 cut(s) 1400
CfoI GCGC 1 cut(s) 7
CseI GACGC 1 cut(s) 854
Csp6I GTAC 2 cut(s) 515, 936
CviAII CATG 5 cut(s) 328, 1019, 1025, 1316, 1384
CviQI GTAC 2 cut(s) 515, 936
DdeI CTNAG 3 cut(s) 35, 486, 498
DpnI GATC 9 cut(s) 205, 555, 657, 1063, 1090, 1117, 1240, 1246, 1323
DpnII GATC 9 cut(s) 203, 553, 655, 1061, 1088, 1115, 1238, 1244, 1321
DraIII CACNNNGTG 1 cut(s) 737
EaeI YGGCCR 4 cut(s) 75, 236, 715, 1231
EagI CGGCCG 1 cut(s) 236
Eam1104I CTCTTC 6 cut(s) 115, 232, 296, 357, 414, 486
EarI CTCTTC 6 cut(s) 115, 232, 296, 357, 414, 486
EciI GGCGGA 2 cut(s) 8, 154
EclXI CGGCCG 1 cut(s) 236
Eco130I CCWWGG 4 cut(s) 1234, 1288, 1346, 1405
Eco24I GRGCYC 1 cut(s) 644
Eco52I CGGCCG 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 954
EcoO109I RGGNCCY 2 cut(s) 1265, 1292
EcoRII CCWGG 6 cut(s) 517, 790, 832, 856, 949, 1309
EcoT14I CCWWGG 4 cut(s) 1234, 1288, 1346, 1405
EcoT22I ATGCAT 1 cut(s) 1381
EcoT38I GRGCYC 1 cut(s) 644
ErhI CCWWGG 4 cut(s) 1234, 1288, 1346, 1405
FaeI CATG 5 cut(s) 331, 1022, 1028, 1319, 1387
FaqI GGGAC 4 cut(s) 83, 857, 994, 1401
FatI CATG 5 cut(s) 327, 1018, 1024, 1315, 1383
FauNDI CATATG 1 cut(s) 940
FblI GTMKAC 1 cut(s) 461
Fnu4HI GCNGC 6 cut(s) 40, 43, 239, 301, 1167, 1194
FokI GGATG 1 cut(s) 202
FriOI GRGCYC 1 cut(s) 644
Fsp4HI GCNGC 6 cut(s) 40, 43, 239, 301, 1167, 1194
FspBI CTAG 2 cut(s) 396, 1275
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 40, 43, 239, 301, 1167, 1194
GsuI CTGGAG 4 cut(s) 342, 540, 855, 1269
HaeIII GGCC 5 cut(s) 77, 238, 276, 717, 1233
HapII CCGG 3 cut(s) 25, 1049, 1221
HgaI GACGC 1 cut(s) 854
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 331, 1022, 1028, 1319, 1387
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 4 cut(s) 192, 494, 542, 703
HpaII CCGG 3 cut(s) 25, 1049, 1221
HphI GGTGA 1 cut(s) 1324
Hpy166II GTNNAC 2 cut(s) 462, 515
Hpy188I TCNGA 4 cut(s) 191, 374, 499, 1326
Hpy188III TCNNGA 7 cut(s) 201, 359, 645, 1011, 1242, 1248, 1257
Hpy8I GTNNAC 2 cut(s) 462, 515
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 8 cut(s) 23, 126, 132, 232, 290, 363, 834, 885
HpyCH4III ACNGT 2 cut(s) 248, 653
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 4 cut(s) 233, 907, 1357, 1379
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 83, 694
HpyF3I CTNAG 3 cut(s) 35, 486, 498
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 5 cut(s) 331, 1022, 1028, 1319, 1387
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 9 cut(s) 203, 553, 655, 1061, 1088, 1115, 1238, 1244, 1321
LmnI GCTCC 5 cut(s) 110, 949, 1006, 1250, 1342
Lsp1109I GCAGC 3 cut(s) 51, 54, 287
MaeI CTAG 2 cut(s) 396, 1275
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 1 cut(s) 659
MalI GATC 9 cut(s) 205, 555, 657, 1063, 1090, 1117, 1240, 1246, 1323
MbiI CCGCTC 1 cut(s) 66
MboI GATC 9 cut(s) 203, 553, 655, 1061, 1088, 1115, 1238, 1244, 1321
MboII GAAGA 6 cut(s) 102, 219, 283, 374, 431, 503
MflI RGATCY 4 cut(s) 1061, 1088, 1115, 1244
MhlI GDGCHC 2 cut(s) 644, 1282
MlsI TGGCCA 2 cut(s) 717, 1233
MluCI AATT 6 cut(s) 185, 435, 600, 763, 826, 889
MluNI TGGCCA 2 cut(s) 717, 1233
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 1 cut(s) 893
Mox20I TGGCCA 2 cut(s) 717, 1233
Mph1103I ATGCAT 1 cut(s) 1381
MscI TGGCCA 2 cut(s) 717, 1233
MseI TTAA 2 cut(s) 507, 825
MslI CAYNNNNRTG 2 cut(s) 326, 1023
Msp20I TGGCCA 2 cut(s) 717, 1233
MspI CCGG 3 cut(s) 25, 1049, 1221
MspR9I CCNGG 7 cut(s) 519, 792, 834, 858, 951, 1050, 1311
Mva1269I GAATGC 1 cut(s) 1359
MvaI CCWGG 6 cut(s) 519, 792, 834, 858, 951, 1311
MwoI GCNNNNNNNGC 3 cut(s) 39, 83, 694
NciI CCSGG 1 cut(s) 1050
NdeI CATATG 1 cut(s) 940
NdeII GATC 9 cut(s) 203, 553, 655, 1061, 1088, 1115, 1238, 1244, 1321
NlaIII CATG 5 cut(s) 331, 1022, 1028, 1319, 1387
NlaIV GGNNCC 4 cut(s) 277, 1267, 1294, 1344
NsiI ATGCAT 1 cut(s) 1381
NspV TTCGAA 1 cut(s) 294
PasI CCCWGGG 1 cut(s) 1310
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PctI GAATGC 1 cut(s) 1359
PfeI GAWTC 3 cut(s) 192, 542, 703
PflMI CCANNNNNTGG 3 cut(s) 737, 1010, 1139
PfoI TCCNGGA 2 cut(s) 832, 1048
PkrI GCNGC 6 cut(s) 41, 44, 240, 302, 1168, 1195
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PpuMI RGGWCCY 2 cut(s) 1265, 1292
Psp5II RGGWCCY 2 cut(s) 1265, 1292
Psp6I CCWGG 6 cut(s) 517, 790, 832, 856, 949, 1309
PspGI CCWGG 6 cut(s) 517, 790, 832, 856, 949, 1309
PspN4I GGNNCC 4 cut(s) 277, 1267, 1294, 1344
PspPPI RGGWCCY 2 cut(s) 1265, 1292
PstNI CAGNNNCTG 1 cut(s) 1400
PsuI RGATCY 4 cut(s) 1061, 1088, 1115, 1244
RsaI GTAC 2 cut(s) 516, 937
RsaNI GTAC 2 cut(s) 515, 936
RseI CAYNNNNRTG 2 cut(s) 326, 1023
SaqAI TTAA 2 cut(s) 507, 825
SatI GCNGC 6 cut(s) 40, 43, 239, 301, 1167, 1194
Sau3AI GATC 9 cut(s) 203, 553, 655, 1061, 1088, 1115, 1238, 1244, 1321
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 7 cut(s) 519, 792, 834, 858, 951, 1050, 1311
SduI GDGCHC 2 cut(s) 644, 1282
SfcI CTRYAG 1 cut(s) 748
SfuI TTCGAA 1 cut(s) 294
SmiMI CAYNNNNRTG 2 cut(s) 326, 1023
SmlI CTYRAG 2 cut(s) 643, 1281
SmoI CTYRAG 2 cut(s) 643, 1281
Sse9I AATT 6 cut(s) 185, 435, 600, 763, 826, 889
SsiI CCGC 8 cut(s) 19, 64, 84, 165, 239, 614, 1167, 1194
SspMI CTAG 2 cut(s) 396, 1275
StyD4I CCNGG 7 cut(s) 517, 790, 832, 856, 949, 1048, 1309
StyI CCWWGG 4 cut(s) 1234, 1288, 1346, 1405
TaaI ACNGT 2 cut(s) 248, 653
TaiI ACGT 1 cut(s) 461
TaqI TCGA 3 cut(s) 202, 294, 1241
TaqII GACCGA 4 cut(s) 1093, 1120, 1201, 1228
TasI AATT 6 cut(s) 185, 435, 600, 763, 826, 889
TatI WGTACW 1 cut(s) 935
TauI GCSGC 3 cut(s) 241, 1169, 1196
TfiI GAWTC 3 cut(s) 192, 542, 703
Tru1I TTAA 2 cut(s) 507, 825
Tru9I TTAA 2 cut(s) 507, 825
TscAI CASTG 3 cut(s) 320, 418, 1303
TseI GCWGC 3 cut(s) 39, 42, 300
TspDTI ATGAA 1 cut(s) 867
TspRI CASTG 3 cut(s) 320, 418, 1303
Van91I CCANNNNNTGG 3 cut(s) 737, 1010, 1139
XagI CCTNNNNNAGG 1 cut(s) 954
XapI RAATTY 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 461
XspI CTAG 2 cut(s) 396, 1275
Zsp2I ATGCAT 1 cut(s) 1381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.