RchiOBHm_Chr5g0083491

protein At3g15000, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005120
Physical Location & Seq
Reverse (-)
89197413 .. 89199043
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35764

Sequence Viewer

Length: 393 bp
ATGGCGCAGAACCTTCTCCGCCTCCGGCGAAGCCTAAGCAGCAGCCTCGTCGCAAATTTCCACCGCTCTCTATCGTCCACCTCCGCACTCTCCTCTGTCCCACGCTCCTCTTCCCCTTCCCCTTCCTCCTCCTCCCCCGCCGTTGTTCAATCTCTCCAATTCCGATTCCAATCTCGATCATTCAGGTCGTCCTCCTTCTCTTCTGCACGGCCGCCTTACGGTAGCAACAACCAAAATGACGAGATTGGCCCCGACACCATACTCTTCGAAGGCTGCGATTACAACCACTGGCTCATCGTCATGGATTTCCCCAGAGATAACAAGCCTTCTCCCGAAGAGATGGTCAGAACTTATGAGGAAACCTGTGCCAGAGGCTTGAATATCAGTGTGTAA

Protein Analysis

130

Amino Acids

14.45

Weight (kDa)

8.8

Isoelectric Point (pI)

96.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 94 - 127 8.6e-10 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 66
AciI CCGC 5 cut(s) 19, 64, 84, 138, 212
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 2 cut(s) 149, 379
AoxI GGCC 2 cut(s) 209, 247
ApeKI GCWGC 3 cut(s) 39, 42, 273
ApoI RAATTY 1 cut(s) 55
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 248
AsuII TTCGAA 1 cut(s) 267
BbvI GCAGC 3 cut(s) 51, 54, 260
BccI CCATC 1 cut(s) 334
BceAI ACGGC 2 cut(s) 125, 224
BcgI CGANNNNNNTGC 4 cut(s) 28, 31, 62, 65
BisI GCNGC 4 cut(s) 40, 43, 212, 274
BlsI GCNGC 4 cut(s) 41, 44, 213, 275
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 250
Bpu10I CCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 4 cut(s) 82, 97, 118, 121
BseX3I CGGCCG 1 cut(s) 209
BseXI GCAGC 3 cut(s) 51, 54, 260
BsgI GTGCAG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 212
BshFI GGCC 2 cut(s) 211, 249
BsiEI CGRYCG 1 cut(s) 212
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 2 cut(s) 211, 249
Bsp119I TTCGAA 1 cut(s) 267
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 5 cut(s) 19, 64, 84, 138, 212
BspANI GGCC 2 cut(s) 211, 249
BspLI GGNNCC 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 267
BsrBI CCGCTC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 293
BssMI GATC 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 4 cut(s) 115, 205, 269, 330
BstBI TTCGAA 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 179
BstMBI GATC 1 cut(s) 176
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 51, 54, 260
BstZI CGGCCG 1 cut(s) 209
BsuRI GGCC 2 cut(s) 211, 249
BtsIMutI CAGTG 2 cut(s) 286, 391
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 248
CviAII CATG 1 cut(s) 301
CviJI RGCY 8 cut(s) 33, 45, 211, 249, 273, 292, 325, 375
CviKI_1 RGCY 8 cut(s) 33, 45, 211, 249, 273, 292, 325, 375
DdeI CTNAG 1 cut(s) 35
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 209
EagI CGGCCG 1 cut(s) 209
Eam1104I CTCTTC 4 cut(s) 115, 205, 269, 330
EarI CTCTTC 4 cut(s) 115, 205, 269, 330
EciI GGCGGA 1 cut(s) 8
EclXI CGGCCG 1 cut(s) 209
Eco52I CGGCCG 1 cut(s) 209
FaeI CATG 1 cut(s) 304
FaiI YATR 3 cut(s) 260, 302, 354
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 300
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 40, 43, 212, 274
Fsp4HI GCNGC 4 cut(s) 40, 43, 212, 274
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 40, 43, 212, 274
HaeIII GGCC 2 cut(s) 211, 249
HapII CCGG 1 cut(s) 25
HhaI GCGC 1 cut(s) 7
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 165
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 2 cut(s) 164, 347
Hpy188III TCNNGA 2 cut(s) 174, 332
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 6 cut(s) 23, 126, 132, 205, 263, 336
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 1 cut(s) 35
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 6 cut(s) 38, 169, 274, 325, 376, 382
Lsp1109I GCAGC 3 cut(s) 51, 54, 260
MalI GATC 1 cut(s) 178
MbiI CCGCTC 1 cut(s) 66
MboI GATC 1 cut(s) 176
MboII GAAGA 4 cut(s) 102, 192, 256, 347
MluCI AATT 2 cut(s) 55, 158
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 39
NdeII GATC 1 cut(s) 176
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 250
NspV TTCGAA 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 4 cut(s) 41, 44, 213, 275
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 299
SatI GCNGC 4 cut(s) 40, 43, 212, 274
Sau3AI GATC 1 cut(s) 176
Sau96I GGNCC 1 cut(s) 248
SetI ASST 4 cut(s) 15, 83, 188, 365
SfuI TTCGAA 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 2 cut(s) 55, 158
SsiI CCGC 5 cut(s) 19, 64, 84, 138, 212
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 175, 267
TasI AATT 2 cut(s) 55, 158
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 1 cut(s) 165
TscAI CASTG 2 cut(s) 293, 391
TseI GCWGC 3 cut(s) 39, 42, 273
TspRI CASTG 2 cut(s) 293, 391
XapI RAATTY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.