Rmu_sc0002245.1_g000044

protein At3g15000, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002245.1
Physical Location & Seq
Forward (+)
209851 .. 212867
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002245.1_g000044.1.cds

Sequence Viewer

Length: 1365 bp
atggcgcagaaccttctccgcctccggcgaagcgtaagcagcagcctcgtcgcaaatttccaccgctctctatcgtccacctccgcactctcctctgtcccacgctcctcttccccttcccctgcctcctcctcccccgccgttgttcaatctctccaattccgattccaatctcgatcattcaggtcgtcctccttctcttctgcacggcctccttacggcagcaacaaccaaaatgacgagattggccccgacaccatactcttcgaaggctgcgattacaaccactggctcatcgtcatggatttccccagagataacaagccttctcccgaagagatggtcagaacttatgaggaaacctgtgccagaggcttgaatatcagtgtggaagaggcaaaaaagaaaatttatgcttgtagcacaacaacgtatacaggctttcaggtgttgatgactgaggaagagtctgagaagtttaatggtgtacctggagttatttttgtgttgcccgattcttacattgatccacaaaacaaggagtatggaggagacaaatatgataatgggaaaattacacccagaccgcccccatttcagtatgagaggcagggctcaagataccgtgatcgtaacagatacgagcgacaaggagcaatgccaaatcagcaagggaatccctcatatggccaacagggttctccacaaggtggaggaaactataggacttcacaaaattatccacaccagacttatgccccaccaggacaaggggaacacagaggtcatacaccagttaattctcctggaggaagggacgcatatcagccaggtagaggtccaactccttcatatcagggcaattacaaccaacaggtgcaagggaacagaccacaaggagagcagagtacatatgctcctcctgatcaaggggaatataggggtaatgatgggacttattgttatgggcaagctccaagctctggaactcatggacatggtttgagtgggcttcaaggcccgggaacaggtggatcttatgggcaaggaccgagtggtggatcttatggacaaggaccgagtggtggaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatggtcaaggaccgagtgctggaagttatggccaaggatcgagatctggagcttctggacaaggacctgtatctagtgctcaagtccaaggacccagtgctggctaccctgggcatggagatcagagtttcacccaagaggagccaaggagaatgcaaggagaacaaacaaattatgcatacatgggacagacaggaactgaccaaggaagatattag

Protein Analysis

454

Amino Acids

48.62

Weight (kDa)

7.66

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 4 cut(s) 710, 983, 1121, 1148
AccBSI CCGCTC 1 cut(s) 66
AccI GTMKAC 1 cut(s) 434
AciI CCGC 5 cut(s) 19, 64, 84, 138, 587
AclWI GGATC 4 cut(s) 521, 1042, 1069, 1192
AcoI YGGCCR 2 cut(s) 688, 1177
AcsI RAATTY 2 cut(s) 55, 408
AdeI CACNNNGTG 1 cut(s) 710
AfaI GTAC 2 cut(s) 489, 910
AgsI TTSAA 3 cut(s) 149, 379, 1016
AjnI CCWGG 7 cut(s) 490, 763, 805, 829, 1114, 1141, 1255
AluBI AGCT 3 cut(s) 974, 981, 1199
AluI AGCT 3 cut(s) 974, 981, 1199
Alw21I GWGCWC 1 cut(s) 1228
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 4 cut(s) 521, 1042, 1069, 1192
AlwNI CAGNNNCTG 1 cut(s) 1346
Ama87I CYCGRG 1 cut(s) 1021
AoxI GGCC 5 cut(s) 209, 247, 688, 1018, 1177
ApeKI GCWGC 4 cut(s) 39, 42, 222, 273
ApoI RAATTY 2 cut(s) 55, 408
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 2 cut(s) 1022, 1023
AsuHPI GGTGA 1 cut(s) 1270
AsuII TTCGAA 1 cut(s) 267
AvaI CYCGRG 1 cut(s) 1021
AvaII GGWCC 8 cut(s) 839, 1049, 1076, 1103, 1130, 1157, 1211, 1238
BaeGI GKGCMC 2 cut(s) 1114, 1141
BalI TGGCCA 2 cut(s) 690, 1179
BanII GRGCYC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 1228
BbvI GCAGC 4 cut(s) 51, 54, 234, 260
BccI CCATC 2 cut(s) 334, 944
BceAI ACGGC 3 cut(s) 125, 224, 235
BcgI CGANNNNNNTGC 4 cut(s) 28, 31, 62, 65
BciT130I CCWGG 7 cut(s) 492, 765, 807, 831, 1116, 1143, 1257
BclI TGATCA 1 cut(s) 925
BcnI CCSGG 2 cut(s) 1022, 1023
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 1 cut(s) 1221
BfmI CTRYAG 1 cut(s) 721
BglII AGATCT 1 cut(s) 1190
BisI GCNGC 4 cut(s) 40, 43, 223, 274
BlsI GCNGC 4 cut(s) 41, 44, 224, 275
Bme1390I CCNGG 9 cut(s) 492, 765, 807, 831, 1022, 1023, 1116, 1143, 1257
Bme18I GGWCC 8 cut(s) 839, 1049, 1076, 1103, 1130, 1157, 1211, 1238
BmeT110I CYCGRG 1 cut(s) 1021
BmiI GGNNCC 3 cut(s) 250, 1240, 1290
BmrFI CCNGG 9 cut(s) 492, 765, 807, 831, 1022, 1023, 1116, 1143, 1257
BmrI ACTGGG 1 cut(s) 1236
BmuI ACTGGG 1 cut(s) 1236
BpmI CTGGAG 3 cut(s) 513, 828, 1215
Bpu14I TTCGAA 1 cut(s) 267
BpuEI CTTGAG 2 cut(s) 601, 1212
BpuMI CCSGG 2 cut(s) 1022, 1023
BsaBI GATNNNNATC 2 cut(s) 169, 1189
BsaJI CCNNGG 9 cut(s) 1021, 1114, 1141, 1180, 1234, 1255, 1256, 1292, 1351
BsaXI ACNNNNNCTCC 2 cut(s) 901, 931
Bse1I ACTGG 3 cut(s) 293, 794, 1242
Bse3DI GCAATG 1 cut(s) 663
Bse8I GATNNNNATC 2 cut(s) 169, 1189
BseBI CCWGG 7 cut(s) 492, 765, 807, 831, 1116, 1143, 1257
BseDI CCNNGG 9 cut(s) 1021, 1114, 1141, 1180, 1234, 1255, 1256, 1292, 1351
BseJI GATNNNNATC 2 cut(s) 169, 1189
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 2 cut(s) 450, 462
BseNI ACTGG 3 cut(s) 293, 794, 1242
BseRI GAGGAG 7 cut(s) 82, 97, 118, 121, 564, 909, 1301
BseSI GKGCMC 2 cut(s) 1114, 1141
BseXI GCAGC 4 cut(s) 51, 54, 234, 260
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 5 cut(s) 211, 249, 690, 1020, 1179
BsiHKAI GWGCWC 1 cut(s) 1228
BsiHKCI CYCGRG 1 cut(s) 1021
BsiSI CCGG 2 cut(s) 25, 1022
BslFI GGGAC 4 cut(s) 83, 830, 967, 1347
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 4 cut(s) 83, 830, 967, 1347
BsmI GAATGC 1 cut(s) 1305
BsnI GGCC 5 cut(s) 211, 249, 690, 1020, 1179
BsoBI CYCGRG 1 cut(s) 1021
Bsp119I TTCGAA 1 cut(s) 267
Bsp1286I GDGCHC 4 cut(s) 617, 1114, 1141, 1228
Bsp143I GATC 9 cut(s) 176, 526, 628, 925, 1034, 1061, 1184, 1190, 1267
BspACI CCGC 5 cut(s) 19, 64, 84, 138, 587
BspANI GGCC 5 cut(s) 211, 249, 690, 1020, 1179
BspCNI CTCAG 2 cut(s) 451, 463
BspLI GGNNCC 3 cut(s) 250, 1240, 1290
BspPI GGATC 4 cut(s) 521, 1042, 1069, 1192
BspT104I TTCGAA 1 cut(s) 267
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 663
BsrI ACTGG 3 cut(s) 293, 794, 1242
BssECI CCNNGG 9 cut(s) 1021, 1114, 1141, 1180, 1234, 1255, 1256, 1292, 1351
BssMI GATC 9 cut(s) 176, 526, 628, 925, 1034, 1061, 1184, 1190, 1267
BssNAI GTATAC 1 cut(s) 435
BssT1I CCWWGG 4 cut(s) 1180, 1234, 1292, 1351
Bst1107I GTATAC 1 cut(s) 435
Bst2UI CCWGG 7 cut(s) 492, 765, 807, 831, 1116, 1143, 1257
Bst4CI ACNGT 1 cut(s) 626
Bst6I CTCTTC 6 cut(s) 115, 205, 269, 330, 387, 459
BstBI TTCGAA 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 972, 1249
BstDEI CTNAG 2 cut(s) 459, 471
BstENI CCTNNNNNAGG 1 cut(s) 927
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 9 cut(s) 179, 529, 631, 928, 1037, 1064, 1187, 1193, 1270
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 9 cut(s) 176, 526, 628, 925, 1034, 1061, 1184, 1190, 1267
BstMWI GCNNNNNNNGC 2 cut(s) 39, 667
BstNI CCWGG 7 cut(s) 492, 765, 807, 831, 1116, 1143, 1257
BstSCI CCNGG 9 cut(s) 490, 763, 805, 829, 1020, 1021, 1114, 1141, 1255
BstSFI CTRYAG 1 cut(s) 721
BstSLI GKGCMC 2 cut(s) 1114, 1141
BstV1I GCAGC 4 cut(s) 51, 54, 234, 260
BstX2I RGATCY 3 cut(s) 1034, 1061, 1190
BstYI RGATCY 3 cut(s) 1034, 1061, 1190
BstZ17I GTATAC 1 cut(s) 435
BsuRI GGCC 5 cut(s) 211, 249, 690, 1020, 1179
BtsIMutI CAGTG 3 cut(s) 286, 391, 1249
Cac8I GCNNGC 2 cut(s) 972, 1249
CaiI CAGNNNCTG 1 cut(s) 1346
CfoI GCGC 1 cut(s) 7
Cfr9I CCCGGG 1 cut(s) 1021
CseI GACGC 1 cut(s) 827
Csp6I GTAC 2 cut(s) 488, 909
CviAII CATG 5 cut(s) 301, 992, 998, 1262, 1330
CviQI GTAC 2 cut(s) 488, 909
DdeI CTNAG 2 cut(s) 459, 471
DpnI GATC 9 cut(s) 178, 528, 630, 927, 1036, 1063, 1186, 1192, 1269
DpnII GATC 9 cut(s) 176, 526, 628, 925, 1034, 1061, 1184, 1190, 1267
DraIII CACNNNGTG 1 cut(s) 710
EaeI YGGCCR 2 cut(s) 688, 1177
Eam1104I CTCTTC 6 cut(s) 115, 205, 269, 330, 387, 459
EarI CTCTTC 6 cut(s) 115, 205, 269, 330, 387, 459
EciI GGCGGA 1 cut(s) 8
Eco130I CCWWGG 4 cut(s) 1180, 1234, 1292, 1351
Eco24I GRGCYC 1 cut(s) 617
Eco47I GGWCC 8 cut(s) 839, 1049, 1076, 1103, 1130, 1157, 1211, 1238
Eco88I CYCGRG 1 cut(s) 1021
EcoNI CCTNNNNNAGG 1 cut(s) 927
EcoO109I RGGNCCY 2 cut(s) 1211, 1238
EcoRII CCWGG 7 cut(s) 490, 763, 805, 829, 1114, 1141, 1255
EcoT14I CCWWGG 4 cut(s) 1180, 1234, 1292, 1351
EcoT22I ATGCAT 1 cut(s) 1327
EcoT38I GRGCYC 1 cut(s) 617
ErhI CCWWGG 4 cut(s) 1180, 1234, 1292, 1351
FaeI CATG 5 cut(s) 304, 995, 1001, 1265, 1333
FaqI GGGAC 4 cut(s) 83, 830, 967, 1347
FatI CATG 5 cut(s) 300, 991, 997, 1261, 1329
FauI CCCGC 1 cut(s) 145
FauNDI CATATG 2 cut(s) 685, 913
FbaI TGATCA 1 cut(s) 925
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 4 cut(s) 40, 43, 223, 274
FriOI GRGCYC 1 cut(s) 617
Fsp4HI GCNGC 4 cut(s) 40, 43, 223, 274
FspBI CTAG 1 cut(s) 1221
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 40, 43, 223, 274
GsuI CTGGAG 3 cut(s) 513, 828, 1215
HaeIII GGCC 5 cut(s) 211, 249, 690, 1020, 1179
HapII CCGG 2 cut(s) 25, 1022
HgaI GACGC 1 cut(s) 827
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 304, 995, 1001, 1265, 1333
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 4 cut(s) 165, 467, 515, 676
HpaII CCGG 2 cut(s) 25, 1022
HphI GGTGA 1 cut(s) 1270
Hpy166II GTNNAC 3 cut(s) 78, 435, 488
Hpy188I TCNGA 4 cut(s) 164, 347, 472, 1272
Hpy188III TCNNGA 8 cut(s) 174, 332, 618, 923, 984, 1188, 1194, 1203
Hpy8I GTNNAC 3 cut(s) 78, 435, 488
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 7 cut(s) 23, 126, 205, 263, 336, 807, 858
HpyCH4III ACNGT 1 cut(s) 626
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 4 cut(s) 206, 880, 1303, 1325
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 667
HpyF3I CTNAG 2 cut(s) 459, 471
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 5 cut(s) 304, 995, 1001, 1265, 1333
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 925
Kzo9I GATC 9 cut(s) 176, 526, 628, 925, 1034, 1061, 1184, 1190, 1267
LmnI GCTCC 6 cut(s) 110, 653, 922, 979, 1196, 1288
Lsp1109I GCAGC 4 cut(s) 51, 54, 234, 260
MaeI CTAG 1 cut(s) 1221
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 632
MalI GATC 9 cut(s) 178, 528, 630, 927, 1036, 1063, 1186, 1192, 1269
MbiI CCGCTC 1 cut(s) 66
MboI GATC 9 cut(s) 176, 526, 628, 925, 1034, 1061, 1184, 1190, 1267
MboII GAAGA 6 cut(s) 102, 192, 256, 347, 404, 476
MflI RGATCY 3 cut(s) 1034, 1061, 1190
MhlI GDGCHC 4 cut(s) 617, 1114, 1141, 1228
MlsI TGGCCA 2 cut(s) 690, 1179
MluCI AATT 8 cut(s) 55, 158, 408, 573, 736, 799, 862, 1318
MluNI TGGCCA 2 cut(s) 690, 1179
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 866
Mox20I TGGCCA 2 cut(s) 690, 1179
Mph1103I ATGCAT 1 cut(s) 1327
MscI TGGCCA 2 cut(s) 690, 1179
MseI TTAA 2 cut(s) 480, 798
MslI CAYNNNNRTG 2 cut(s) 299, 996
Msp20I TGGCCA 2 cut(s) 690, 1179
MspI CCGG 2 cut(s) 25, 1022
MspR9I CCNGG 9 cut(s) 492, 765, 807, 831, 1022, 1023, 1116, 1143, 1257
Mva1269I GAATGC 1 cut(s) 1305
MvaI CCWGG 7 cut(s) 492, 765, 807, 831, 1116, 1143, 1257
MwoI GCNNNNNNNGC 2 cut(s) 39, 667
NciI CCSGG 2 cut(s) 1022, 1023
NdeI CATATG 2 cut(s) 685, 913
NdeII GATC 9 cut(s) 176, 526, 628, 925, 1034, 1061, 1184, 1190, 1267
NlaIII CATG 5 cut(s) 304, 995, 1001, 1265, 1333
NlaIV GGNNCC 3 cut(s) 250, 1240, 1290
NsiI ATGCAT 1 cut(s) 1327
NspV TTCGAA 1 cut(s) 267
PasI CCCWGGG 1 cut(s) 1256
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PctI GAATGC 1 cut(s) 1305
PfeI GAWTC 3 cut(s) 165, 515, 676
PflMI CCANNNNNTGG 4 cut(s) 710, 983, 1121, 1148
PfoI TCCNGGA 1 cut(s) 805
PkrI GCNGC 4 cut(s) 41, 44, 224, 275
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PpuMI RGGWCCY 2 cut(s) 1211, 1238
Psp5II RGGWCCY 2 cut(s) 1211, 1238
Psp6I CCWGG 7 cut(s) 490, 763, 805, 829, 1114, 1141, 1255
PspGI CCWGG 7 cut(s) 490, 763, 805, 829, 1114, 1141, 1255
PspN4I GGNNCC 3 cut(s) 250, 1240, 1290
PspPPI RGGWCCY 2 cut(s) 1211, 1238
PstNI CAGNNNCTG 1 cut(s) 1346
PsuI RGATCY 3 cut(s) 1034, 1061, 1190
RsaI GTAC 2 cut(s) 489, 910
RsaNI GTAC 2 cut(s) 488, 909
RseI CAYNNNNRTG 2 cut(s) 299, 996
SaqAI TTAA 2 cut(s) 480, 798
SatI GCNGC 4 cut(s) 40, 43, 223, 274
Sau3AI GATC 9 cut(s) 176, 526, 628, 925, 1034, 1061, 1184, 1190, 1267
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 9 cut(s) 492, 765, 807, 831, 1022, 1023, 1116, 1143, 1257
SduI GDGCHC 4 cut(s) 617, 1114, 1141, 1228
SfcI CTRYAG 1 cut(s) 721
SfuI TTCGAA 1 cut(s) 267
SinI GGWCC 8 cut(s) 839, 1049, 1076, 1103, 1130, 1157, 1211, 1238
SmaI CCCGGG 1 cut(s) 1023
SmiMI CAYNNNNRTG 2 cut(s) 299, 996
SmlI CTYRAG 2 cut(s) 616, 1227
SmoI CTYRAG 2 cut(s) 616, 1227
Sse9I AATT 8 cut(s) 55, 158, 408, 573, 736, 799, 862, 1318
SsiI CCGC 5 cut(s) 19, 64, 84, 138, 587
SspMI CTAG 1 cut(s) 1221
StyD4I CCNGG 9 cut(s) 490, 763, 805, 829, 1020, 1021, 1114, 1141, 1255
StyI CCWWGG 4 cut(s) 1180, 1234, 1292, 1351
TaaI ACNGT 1 cut(s) 626
TaiI ACGT 1 cut(s) 434
TaqI TCGA 3 cut(s) 175, 267, 1187
TaqII GACCGA 5 cut(s) 1066, 1093, 1120, 1147, 1174
TasI AATT 8 cut(s) 55, 158, 408, 573, 736, 799, 862, 1318
TatI WGTACW 1 cut(s) 908
TfiI GAWTC 3 cut(s) 165, 515, 676
Tru1I TTAA 2 cut(s) 480, 798
Tru9I TTAA 2 cut(s) 480, 798
TscAI CASTG 3 cut(s) 293, 391, 1249
TseI GCWGC 4 cut(s) 39, 42, 222, 273
TspDTI ATGAA 1 cut(s) 840
TspMI CCCGGG 1 cut(s) 1021
TspRI CASTG 3 cut(s) 293, 391, 1249
Van91I CCANNNNNTGG 4 cut(s) 710, 983, 1121, 1148
VpaK11BI GGWCC 8 cut(s) 839, 1049, 1076, 1103, 1130, 1157, 1211, 1238
XagI CCTNNNNNAGG 1 cut(s) 927
XapI RAATTY 2 cut(s) 55, 408
XmaI CCCGGG 1 cut(s) 1021
XmiI GTMKAC 1 cut(s) 434
XspI CTAG 1 cut(s) 1221
Zsp2I ATGCAT 1 cut(s) 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.