Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001444.1

Orthogroup ID

OG0005120

Physical Location & Seq

Genomic Coordinates Forward (+)

45400 .. 48960

Gene Structure 3561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001444.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1908 bp

atggcgcagaaccttctccgcctccggcgaagcctaagcagcagcctcgtcgcaaatctccaccgttctctatcgtccacctccgcactctcctctgtcccacgctcctcttccccttccccttcctcctcctcctcccccgccgttgttcaatctctccaattccgattccaatctcgatcattcaggtcgtcctccttctcttctgcacggccgccttacggtagcaacaaccaaaatgacgagattggccccgacaccatactcttcgaaggctgcgattacaaccactggcttatcgtcatggatttccccagagataacaagccttctcccgaagagatggtcagaacttatgaggaaacctgtgccagaggcttgaatatcagtgtggaagaggcaaaaaagaaaatttatgcttgtagcacaacaacgtatacaggctttcaggtgttgatgactgaggaagagtctgagaagtttaatggtgtacctggagttatttttgtgttgcccgattcttacattgatccacaaaacaaggagtatggaggagacaaatatgataatgggaaaattacacccagaccgcccccatttcagtatgagaggcagggctcaagataccgtgatcgtaacagatacgagcgacaaggagcaatgccaaatcagcaagggaatccctcatatggccaacagggttctccacaaggtggaggaaactataggacttcacaaaattatccacaccagacttatgccccaccaggacaaggggaacacagaggtcatacaccagttaattctcctggaggaagggacgcatatcagccaggtagaggtccaactccttcatatcagggcaattacaaccaacaggtgcaagggaacagaccacaaggagagcagagtacatatgctcctcctgatcaaggggaatataggggtaatgatgggacttattgttatgggcaagctccaagctctggaactcatggacatggtttgagtgggcttcaaggcccgggaacaggtggatcttatgggcaaggaccgagtggtggatcttatggacaaggaccaagtggtggaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatgggcaaggaccgagtgccccaggttatggtcaaggaccgagtgctggaagttatggccaaggatcgagatctggagcttctggacaaggacctgtatctagtgctcaagtccaaggacccagtgctggctaccctgggcatggagatcagagtttcacccaagaggagccaaggagaatgcaaggagaacaaacaaattatgcatacatgggacagacaggaactgaccaaggaagatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1900865 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

635

Amino Acids

65.0

Weight (kDa)

7.61

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20020 AT4G20020
fragaria_vesca	FvH4_5g12910 FvH4_5g12910 FvH4_5g12910 FvH4_5g12910
malus_domestica	MD08G1237000.v1.1 MD15G1428800.v1.1
prunus_persica	Prupe.1G574100_v2.0.a1 Prupe.1G574100_v2.0.a1
pyrus_communis	pycom08g20520 pycom15g37970
rosa_chinensis	RchiOBHm_Chr5g0083371 RchiOBHm_Chr5g0083421 RchiOBHm_Chr5g0083491 RchiOBHm_Chr5g0083551
rosa_laevigata	RLG00000037031
rosa_multiflora	Rmu_sc0001444.1_g000012 Rmu_sc0002245.1_g000044
rosa_roxburghii	Rroxscaffold_1G00001030 Rroxscaffold_1G00001120
rosa_rugosa	Rorug05G0484400 Rorug05G0484500
rosa_samantha	Rh5AG533900 Rh5BG561700 Rh5BG561900 Rh5CG584100 Rh5CG584300 Rh5DG570400
rosa_wichuraiana	Rw5G049890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	437
AciI	CCGC	5 cut(s)	19, 84, 141, 215, 590
AclWI	GGATC	4 cut(s)	524, 1045, 1072, 1735
AcoI	YGGCCR	3 cut(s)	212, 691, 1720
AcsI	RAATTY	1 cut(s)	411
AdeI	CACNNNGTG	1 cut(s)	713
AfaI	GTAC	2 cut(s)	492, 913
AgsI	TTSAA	3 cut(s)	152, 382, 1019
AluBI	AGCT	3 cut(s)	977, 984, 1742
AluI	AGCT	3 cut(s)	977, 984, 1742
Alw21I	GWGCWC	1 cut(s)	1771
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	4 cut(s)	524, 1045, 1072, 1735
AlwNI	CAGNNNCTG	1 cut(s)	1889
Ama87I	CYCGRG	1 cut(s)	1024
AoxI	GGCC	5 cut(s)	212, 250, 691, 1021, 1720
ApeKI	GCWGC	3 cut(s)	39, 42, 276
ApoI	RAATTY	1 cut(s)	411
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	2 cut(s)	1025, 1026
AsuHPI	GGTGA	1 cut(s)	1813
AsuII	TTCGAA	1 cut(s)	270
AvaI	CYCGRG	1 cut(s)	1024
BalI	TGGCCA	2 cut(s)	693, 1722
BanII	GRGCYC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	1771
BbvI	GCAGC	3 cut(s)	51, 54, 263
BccI	CCATC	2 cut(s)	337, 947
BceAI	ACGGC	2 cut(s)	128, 227
BcgI	CGANNNNNNTGC	4 cut(s)	28, 31, 62, 65
BclI	TGATCA	1 cut(s)	928
BcnI	CCSGG	2 cut(s)	1025, 1026
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	1764
BfmI	CTRYAG	1 cut(s)	724
BglII	AGATCT	1 cut(s)	1733
BisI	GCNGC	4 cut(s)	40, 43, 215, 277
BlsI	GCNGC	4 cut(s)	41, 44, 216, 278
BmeT110I	CYCGRG	1 cut(s)	1024
BmiI	GGNNCC	3 cut(s)	253, 1783, 1833
BmrI	ACTGGG	1 cut(s)	1779
BmuI	ACTGGG	1 cut(s)	1779
BpmI	CTGGAG	3 cut(s)	516, 831, 1758
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	604, 1755
BpuMI	CCSGG	2 cut(s)	1025, 1026
BsaBI	GATNNNNATC	2 cut(s)	172, 1732
BsaXI	ACNNNNNCTCC	2 cut(s)	904, 934
Bse1I	ACTGG	3 cut(s)	296, 797, 1785
Bse3DI	GCAATG	1 cut(s)	666
Bse8I	GATNNNNATC	2 cut(s)	172, 1732
BseJI	GATNNNNATC	2 cut(s)	172, 1732
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	453, 465
BseNI	ACTGG	3 cut(s)	296, 797, 1785
BseRI	GAGGAG	8 cut(s)	82, 97, 118, 121, 124, 567, 912, 1844
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	51, 54, 263
BsgI	GTGCAG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	5 cut(s)	214, 252, 693, 1023, 1722
BsiEI	CGRYCG	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	1771
BsiHKCI	CYCGRG	1 cut(s)	1024
BsiSI	CCGG	2 cut(s)	25, 1025
BslFI	GGGAC	4 cut(s)	83, 833, 970, 1890
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	4 cut(s)	83, 833, 970, 1890
BsmI	GAATGC	1 cut(s)	1848
BsnI	GGCC	5 cut(s)	214, 252, 693, 1023, 1722
BsoBI	CYCGRG	1 cut(s)	1024
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	9 cut(s)	179, 529, 631, 928, 1037, 1064, 1727, 1733, 1810
BspACI	CCGC	5 cut(s)	19, 84, 141, 215, 590
BspANI	GGCC	5 cut(s)	214, 252, 693, 1023, 1722
BspCNI	CTCAG	2 cut(s)	454, 466
BspLI	GGNNCC	3 cut(s)	253, 1783, 1833
BspPI	GGATC	4 cut(s)	524, 1045, 1072, 1735
BspT104I	TTCGAA	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	3 cut(s)	296, 797, 1785
BssMI	GATC	9 cut(s)	179, 529, 631, 928, 1037, 1064, 1727, 1733, 1810
BssNAI	GTATAC	1 cut(s)	438
BssT1I	CCWWGG	4 cut(s)	1723, 1777, 1835, 1894
Bst1107I	GTATAC	1 cut(s)	438
Bst4CI	ACNGT	3 cut(s)	65, 224, 629
Bst6I	CTCTTC	6 cut(s)	115, 208, 272, 333, 390, 462
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	975, 1792
BstDEI	CTNAG	3 cut(s)	35, 462, 474
BstENI	CCTNNNNNAGG	1 cut(s)	930
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	9 cut(s)	182, 532, 634, 931, 1040, 1067, 1730, 1736, 1813
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	9 cut(s)	179, 529, 631, 928, 1037, 1064, 1727, 1733, 1810
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 670
BstSFI	CTRYAG	1 cut(s)	724
BstV1I	GCAGC	3 cut(s)	51, 54, 263
BstX2I	RGATCY	3 cut(s)	1037, 1064, 1733
BstYI	RGATCY	3 cut(s)	1037, 1064, 1733
BstZ17I	GTATAC	1 cut(s)	438
BstZI	CGGCCG	1 cut(s)	212
BsuRI	GGCC	5 cut(s)	214, 252, 693, 1023, 1722
BtsIMutI	CAGTG	3 cut(s)	289, 394, 1792
Cac8I	GCNNGC	2 cut(s)	975, 1792
CaiI	CAGNNNCTG	1 cut(s)	1889
CfoI	GCGC	1 cut(s)	7
Cfr9I	CCCGGG	1 cut(s)	1024
CseI	GACGC	1 cut(s)	830
Csp6I	GTAC	2 cut(s)	491, 912
CviAII	CATG	5 cut(s)	304, 995, 1001, 1805, 1873
CviQI	GTAC	2 cut(s)	491, 912
DdeI	CTNAG	3 cut(s)	35, 462, 474
DpnI	GATC	9 cut(s)	181, 531, 633, 930, 1039, 1066, 1729, 1735, 1812
DpnII	GATC	9 cut(s)	179, 529, 631, 928, 1037, 1064, 1727, 1733, 1810
DraIII	CACNNNGTG	1 cut(s)	713
EaeI	YGGCCR	3 cut(s)	212, 691, 1720
EagI	CGGCCG	1 cut(s)	212
Eam1104I	CTCTTC	6 cut(s)	115, 208, 272, 333, 390, 462
EarI	CTCTTC	6 cut(s)	115, 208, 272, 333, 390, 462
EciI	GGCGGA	1 cut(s)	8
EclXI	CGGCCG	1 cut(s)	212
Eco130I	CCWWGG	4 cut(s)	1723, 1777, 1835, 1894
Eco24I	GRGCYC	1 cut(s)	620
Eco52I	CGGCCG	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	1024
EcoNI	CCTNNNNNAGG	1 cut(s)	930
EcoO109I	RGGNCCY	2 cut(s)	1754, 1781
EcoT14I	CCWWGG	4 cut(s)	1723, 1777, 1835, 1894
EcoT22I	ATGCAT	1 cut(s)	1870
EcoT38I	GRGCYC	1 cut(s)	620
ErhI	CCWWGG	4 cut(s)	1723, 1777, 1835, 1894
FaeI	CATG	5 cut(s)	307, 998, 1004, 1808, 1876
FaqI	GGGAC	4 cut(s)	83, 833, 970, 1890
FatI	CATG	5 cut(s)	303, 994, 1000, 1804, 1872
FauI	CCCGC	1 cut(s)	148
FauNDI	CATATG	2 cut(s)	688, 916
FbaI	TGATCA	1 cut(s)	928
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	40, 43, 215, 277
FriOI	GRGCYC	1 cut(s)	620
Fsp4HI	GCNGC	4 cut(s)	40, 43, 215, 277
FspBI	CTAG	1 cut(s)	1764
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	40, 43, 215, 277
GsuI	CTGGAG	3 cut(s)	516, 831, 1758
HaeIII	GGCC	5 cut(s)	214, 252, 693, 1023, 1722
HapII	CCGG	2 cut(s)	25, 1025
HgaI	GACGC	1 cut(s)	830
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	5 cut(s)	307, 998, 1004, 1808, 1876
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	4 cut(s)	168, 470, 518, 679
HpaII	CCGG	2 cut(s)	25, 1025
HphI	GGTGA	1 cut(s)	1813
Hpy166II	GTNNAC	3 cut(s)	78, 438, 491
Hpy188I	TCNGA	4 cut(s)	167, 350, 475, 1815
Hpy188III	TCNNGA	8 cut(s)	177, 335, 621, 926, 987, 1731, 1737, 1746
Hpy8I	GTNNAC	3 cut(s)	78, 438, 491
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	8 cut(s)	23, 126, 132, 208, 266, 339, 810, 861
HpyCH4III	ACNGT	3 cut(s)	65, 224, 629
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	4 cut(s)	209, 883, 1846, 1868
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 670
HpyF3I	CTNAG	3 cut(s)	35, 462, 474
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	5 cut(s)	307, 998, 1004, 1808, 1876
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	928
Kzo9I	GATC	9 cut(s)	179, 529, 631, 928, 1037, 1064, 1727, 1733, 1810
LmnI	GCTCC	6 cut(s)	110, 656, 925, 982, 1739, 1831
Lsp1109I	GCAGC	3 cut(s)	51, 54, 263
MaeI	CTAG	1 cut(s)	1764
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	9 cut(s)	181, 531, 633, 930, 1039, 1066, 1729, 1735, 1812
MboI	GATC	9 cut(s)	179, 529, 631, 928, 1037, 1064, 1727, 1733, 1810
MboII	GAAGA	6 cut(s)	102, 195, 259, 350, 407, 479
MflI	RGATCY	3 cut(s)	1037, 1064, 1733
MlsI	TGGCCA	2 cut(s)	693, 1722
MluCI	AATT	7 cut(s)	161, 411, 576, 739, 802, 865, 1861
MluNI	TGGCCA	2 cut(s)	693, 1722
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	869
Mox20I	TGGCCA	2 cut(s)	693, 1722
Mph1103I	ATGCAT	1 cut(s)	1870
MscI	TGGCCA	2 cut(s)	693, 1722
MseI	TTAA	2 cut(s)	483, 801
MslI	CAYNNNNRTG	1 cut(s)	999
Msp20I	TGGCCA	2 cut(s)	693, 1722
MspI	CCGG	2 cut(s)	25, 1025
Mva1269I	GAATGC	1 cut(s)	1848
MwoI	GCNNNNNNNGC	2 cut(s)	39, 670
NciI	CCSGG	2 cut(s)	1025, 1026
NdeI	CATATG	2 cut(s)	688, 916
NdeII	GATC	9 cut(s)	179, 529, 631, 928, 1037, 1064, 1727, 1733, 1810
NlaIII	CATG	5 cut(s)	307, 998, 1004, 1808, 1876
NlaIV	GGNNCC	3 cut(s)	253, 1783, 1833
NsiI	ATGCAT	1 cut(s)	1870
NspV	TTCGAA	1 cut(s)	270
PasI	CCCWGGG	1 cut(s)	1799
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	1 cut(s)	1848
PfeI	GAWTC	3 cut(s)	168, 518, 679
PfoI	TCCNGGA	1 cut(s)	808
PkrI	GCNGC	4 cut(s)	41, 44, 216, 278
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PpuMI	RGGWCCY	2 cut(s)	1754, 1781
Psp5II	RGGWCCY	2 cut(s)	1754, 1781
PspN4I	GGNNCC	3 cut(s)	253, 1783, 1833
PspPPI	RGGWCCY	2 cut(s)	1754, 1781
PstNI	CAGNNNCTG	1 cut(s)	1889
PsuI	RGATCY	3 cut(s)	1037, 1064, 1733
RsaI	GTAC	2 cut(s)	492, 913
RsaNI	GTAC	2 cut(s)	491, 912
RseI	CAYNNNNRTG	1 cut(s)	999
SaqAI	TTAA	2 cut(s)	483, 801
SatI	GCNGC	4 cut(s)	40, 43, 215, 277
Sau3AI	GATC	9 cut(s)	179, 529, 631, 928, 1037, 1064, 1727, 1733, 1810
SchI	GAGTC	1 cut(s)	479
SfcI	CTRYAG	1 cut(s)	724
SfuI	TTCGAA	1 cut(s)	270
SmaI	CCCGGG	1 cut(s)	1026
SmiMI	CAYNNNNRTG	1 cut(s)	999
SmlI	CTYRAG	2 cut(s)	619, 1770
SmoI	CTYRAG	2 cut(s)	619, 1770
Sse9I	AATT	7 cut(s)	161, 411, 576, 739, 802, 865, 1861
SsiI	CCGC	5 cut(s)	19, 84, 141, 215, 590
SspMI	CTAG	1 cut(s)	1764
StyI	CCWWGG	4 cut(s)	1723, 1777, 1835, 1894
TaaI	ACNGT	3 cut(s)	65, 224, 629
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	3 cut(s)	178, 270, 1730
TasI	AATT	7 cut(s)	161, 411, 576, 739, 802, 865, 1861
TatI	WGTACW	1 cut(s)	911
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	3 cut(s)	168, 518, 679
Tru1I	TTAA	2 cut(s)	483, 801
Tru9I	TTAA	2 cut(s)	483, 801
TscAI	CASTG	3 cut(s)	296, 394, 1792
TseI	GCWGC	3 cut(s)	39, 42, 276
TspDTI	ATGAA	1 cut(s)	843
TspMI	CCCGGG	1 cut(s)	1024
TspRI	CASTG	3 cut(s)	296, 394, 1792
XagI	CCTNNNNNAGG	1 cut(s)	930
XapI	RAATTY	1 cut(s)	411
XmaI	CCCGGG	1 cut(s)	1024
XmiI	GTMKAC	1 cut(s)	437
XspI	CTAG	1 cut(s)	1764
Zsp2I	ATGCAT	1 cut(s)	1870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.