RLG00000037031

protein At3g15000, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
87662867 .. 87665878
3012 bp
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UTR
Exon/CDS
Intron
RLM00000037031

Sequence Viewer

Length: 1374 bp
ATGGCGCAGAACCTTCTCCGCCTCCGGCGAAGCCTAAGCAGCAGCACCAGCCTCGTTGCAAATCTCCACCGTTCTCTATCGTCCACCTCCGCACTCTCCTCTGTCCCACGCTCCTCTTCCCCTTCCCCTTCCTCCTCCTCCTCCCCCGCCGTTGTTCAATCTCTCCAATTCCGATTCCAATCTCGATCATTCAGGTCGTCCTCCTTCTCTTCTGCACGGCCGCCTTACGGTAGCAACAACCAAAATGACGAGATTGGCCCCGACACCATACTCTTCGAAGGCTGCGATTACAACCACTGGCTCATCGTCATGGATTTCCCCAGAGATAACAAGCCTTCTCCAGAAGAGATGGTCAGAACTTATGAGGAAACCTGTGCTAAAGGCTTGAATATCAGTGTGGAAGAGGCAAAAAAGAAAATTTATGCTTGTAGCACAACAACGTATACTGGCTTTCAGGTGTTGATGACTGAGGAAGAGTCTGAGAAGTTTAATGGTGTACCTGGAGTTATTTTTGTGTTGCCTGATTCTTACATTGATCCACAAAACAAGGAGTATGGAGGAGACAAATATGATAATGGGAAAATTACCCCCAGACCGCCCCCATTTCAGTATGAGAGGCAGGGCTCAAGATACCGTGATCGTAACAGATACGAGCGACAAGGATCAATGCCAAATCAGCAAGGGAATCCCTCGTATGGCCAACAGGGTTCTCCACAAGGTGGAGGAAACTATAGGACTTCACAAAATTATCCACACCAGACTTATGCCCCACCAGGACAAGGGGAACACAGAGGTCATGCACCAGTTAATTCTCCTGGAGGAAGGGACGCATATCAGCCAGGTAGAGGTCCAACTCCTTCATATCAGGGCAATTACAACCAACGGGTGCAAGGGAACAGACCAGAAGGAGAGCAGAGTACATATGCTCCTCCTGGTCAAGGGGAATATAGGGGTAATGATGGGACTTATGGTTATGGGCAAGGTCCAAGCTCTGGAACTCATGGACATGGTTTGAGTGGGCTCCAAGGCTCGGGAACAGATGGATCTTATGGGCAAGGACCGAGTGGTGGATCTTATGGGCAAGGACCGAGTGGTGGATCTTATGGACAAGGACCGAGTGGTGGAGGTTATGGGCAAGGACCGAGTGCCGCAGGTTATGGGCAAGGACCGAGTGCCGCAGGTTATGGTCAAGGACCGAGTGCCGGAAGTTATGGCCAAGGACCCGTATCTAGTGCTCAAGTCCAAGGACCCAGTGCTGGCTACCCTGGGCATGGAGATCAGAGTTTCACCCAAGAGGAGCCAAGGAGAATGCAAGGAGAACAAACAAACTATGCGTACATGGGACAGACAGGAACTGACCAAGGAAGATATTAG

Protein Analysis

458

Amino Acids

48.76

Weight (kDa)

7.09

Isoelectric Point (pI)

58.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 97 - 190 2.2e-37 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1142, 1169
AccB7I CCANNNNNTGG 2 cut(s) 719, 992
AccI GTMKAC 1 cut(s) 443
AciI CCGC 7 cut(s) 19, 90, 147, 221, 596, 1149, 1176
AclWI GGATC 5 cut(s) 530, 670, 1051, 1078, 1105
AcoI YGGCCR 3 cut(s) 218, 697, 1213
AcsI RAATTY 1 cut(s) 417
AdeI CACNNNGTG 1 cut(s) 719
AfaI GTAC 3 cut(s) 498, 919, 1337
AgsI TTSAA 2 cut(s) 158, 388
AjnI CCWGG 6 cut(s) 499, 772, 814, 838, 931, 1264
AluBI AGCT 1 cut(s) 990
AluI AGCT 1 cut(s) 990
Alw21I GWGCWC 1 cut(s) 1237
Alw26I GTCTC 1 cut(s) 555
AlwI GGATC 5 cut(s) 530, 670, 1051, 1078, 1105
AlwNI CAGNNNCTG 1 cut(s) 1355
Ama87I CYCGRG 1 cut(s) 1030
AoxI GGCC 4 cut(s) 218, 256, 697, 1213
ApeKI GCWGC 3 cut(s) 39, 42, 282
ApoI RAATTY 1 cut(s) 417
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 1279
AsuII TTCGAA 1 cut(s) 276
AvaI CYCGRG 1 cut(s) 1030
BalI TGGCCA 2 cut(s) 699, 1215
BanII GRGCYC 2 cut(s) 626, 1023
Bbv12I GWGCWC 1 cut(s) 1237
BbvI GCAGC 3 cut(s) 51, 54, 269
BccI CCATC 3 cut(s) 343, 953, 1034
BceAI ACGGC 2 cut(s) 134, 233
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 6 cut(s) 501, 774, 816, 840, 933, 1266
BcoDI GTCTC 1 cut(s) 555
BfaI CTAG 1 cut(s) 1230
BfmI CTRYAG 1 cut(s) 730
BfuAI ACCTGC 2 cut(s) 1142, 1169
BisI GCNGC 6 cut(s) 40, 43, 221, 283, 1149, 1176
BlsI GCNGC 6 cut(s) 41, 44, 222, 284, 1150, 1177
Bme1390I CCNGG 6 cut(s) 501, 774, 816, 840, 933, 1266
BmeT110I CYCGRG 1 cut(s) 1030
BmiI GGNNCC 5 cut(s) 259, 1022, 1222, 1249, 1299
BmrFI CCNGG 6 cut(s) 501, 774, 816, 840, 933, 1266
BmrI ACTGGG 1 cut(s) 1245
BmuI ACTGGG 1 cut(s) 1245
BpmI CTGGAG 3 cut(s) 324, 522, 837
Bpu10I CCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 610, 1221
BsaBI GATNNNNATC 1 cut(s) 178
BsaJI CCNNGG 7 cut(s) 1024, 1216, 1243, 1264, 1265, 1301, 1360
BsaXI ACNNNNNCTCC 2 cut(s) 910, 940
Bse1I ACTGG 4 cut(s) 302, 451, 803, 1251
Bse8I GATNNNNATC 1 cut(s) 178
BseBI CCWGG 6 cut(s) 501, 774, 816, 840, 933, 1266
BseDI CCNNGG 7 cut(s) 1024, 1216, 1243, 1264, 1265, 1301, 1360
BseJI GATNNNNATC 1 cut(s) 178
BseMII CTCAG 2 cut(s) 459, 471
BseNI ACTGG 4 cut(s) 302, 451, 803, 1251
BseRI GAGGAG 8 cut(s) 88, 103, 124, 127, 130, 573, 918, 1310
BseX3I CGGCCG 1 cut(s) 218
BseXI GCAGC 3 cut(s) 51, 54, 269
BsgI GTGCAG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 4 cut(s) 220, 258, 699, 1215
BsiEI CGRYCG 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 1237
BsiHKCI CYCGRG 1 cut(s) 1030
BsiSI CCGG 2 cut(s) 25, 1203
BslFI GGGAC 4 cut(s) 89, 839, 976, 1356
BsmAI GTCTC 1 cut(s) 555
BsmFI GGGAC 4 cut(s) 89, 839, 976, 1356
BsmI GAATGC 1 cut(s) 1314
BsnI GGCC 4 cut(s) 220, 258, 699, 1215
BsoBI CYCGRG 1 cut(s) 1030
Bsp119I TTCGAA 1 cut(s) 276
Bsp1286I GDGCHC 3 cut(s) 626, 1023, 1237
Bsp143I GATC 8 cut(s) 185, 535, 637, 662, 1043, 1070, 1097, 1276
BspACI CCGC 7 cut(s) 19, 90, 147, 221, 596, 1149, 1176
BspANI GGCC 4 cut(s) 220, 258, 699, 1215
BspCNI CTCAG 2 cut(s) 460, 472
BspLI GGNNCC 5 cut(s) 259, 1022, 1222, 1249, 1299
BspMI ACCTGC 2 cut(s) 1142, 1169
BspPI GGATC 5 cut(s) 530, 670, 1051, 1078, 1105
BspT104I TTCGAA 1 cut(s) 276
BsrI ACTGG 4 cut(s) 302, 451, 803, 1251
BssECI CCNNGG 7 cut(s) 1024, 1216, 1243, 1264, 1265, 1301, 1360
BssMI GATC 8 cut(s) 185, 535, 637, 662, 1043, 1070, 1097, 1276
BssNAI GTATAC 1 cut(s) 444
BssT1I CCWWGG 5 cut(s) 1024, 1216, 1243, 1301, 1360
Bst1107I GTATAC 1 cut(s) 444
Bst2UI CCWGG 6 cut(s) 501, 774, 816, 840, 933, 1266
Bst4CI ACNGT 3 cut(s) 71, 230, 635
Bst6I CTCTTC 6 cut(s) 121, 214, 278, 339, 396, 468
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 1258
BstDEI CTNAG 3 cut(s) 35, 468, 480
BstENI CCTNNNNNAGG 1 cut(s) 936
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 8 cut(s) 188, 538, 640, 665, 1046, 1073, 1100, 1279
BstMAI GTCTC 1 cut(s) 555
BstMBI GATC 8 cut(s) 185, 535, 637, 662, 1043, 1070, 1097, 1276
BstMCI CGRYCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 3 cut(s) 39, 48, 676
BstNI CCWGG 6 cut(s) 501, 774, 816, 840, 933, 1266
BstSCI CCNGG 6 cut(s) 499, 772, 814, 838, 931, 1264
BstSFI CTRYAG 1 cut(s) 730
BstV1I GCAGC 3 cut(s) 51, 54, 269
BstX2I RGATCY 3 cut(s) 1043, 1070, 1097
BstYI RGATCY 3 cut(s) 1043, 1070, 1097
BstZ17I GTATAC 1 cut(s) 444
BstZI CGGCCG 1 cut(s) 218
BsuRI GGCC 4 cut(s) 220, 258, 699, 1215
BtsIMutI CAGTG 3 cut(s) 295, 400, 1258
BveI ACCTGC 2 cut(s) 1142, 1169
Cac8I GCNNGC 1 cut(s) 1258
CaiI CAGNNNCTG 1 cut(s) 1355
CfoI GCGC 1 cut(s) 7
CseI GACGC 1 cut(s) 836
Csp6I GTAC 3 cut(s) 497, 918, 1336
CviAII CATG 6 cut(s) 310, 797, 1001, 1007, 1271, 1339
CviQI GTAC 3 cut(s) 497, 918, 1336
DdeI CTNAG 3 cut(s) 35, 468, 480
DpnI GATC 8 cut(s) 187, 537, 639, 664, 1045, 1072, 1099, 1278
DpnII GATC 8 cut(s) 185, 535, 637, 662, 1043, 1070, 1097, 1276
DraIII CACNNNGTG 1 cut(s) 719
EaeI YGGCCR 3 cut(s) 218, 697, 1213
EagI CGGCCG 1 cut(s) 218
Eam1104I CTCTTC 6 cut(s) 121, 214, 278, 339, 396, 468
EarI CTCTTC 6 cut(s) 121, 214, 278, 339, 396, 468
EciI GGCGGA 1 cut(s) 8
EclXI CGGCCG 1 cut(s) 218
Eco130I CCWWGG 5 cut(s) 1024, 1216, 1243, 1301, 1360
Eco24I GRGCYC 2 cut(s) 626, 1023
Eco52I CGGCCG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 1030
EcoNI CCTNNNNNAGG 1 cut(s) 936
EcoO109I RGGNCCY 2 cut(s) 1220, 1247
EcoRII CCWGG 6 cut(s) 499, 772, 814, 838, 931, 1264
EcoT14I CCWWGG 5 cut(s) 1024, 1216, 1243, 1301, 1360
EcoT38I GRGCYC 2 cut(s) 626, 1023
ErhI CCWWGG 5 cut(s) 1024, 1216, 1243, 1301, 1360
FaeI CATG 6 cut(s) 313, 800, 1004, 1010, 1274, 1342
FaqI GGGAC 4 cut(s) 89, 839, 976, 1356
FatI CATG 6 cut(s) 309, 796, 1000, 1006, 1270, 1338
FauI CCCGC 1 cut(s) 154
FauNDI CATATG 1 cut(s) 922
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 6 cut(s) 40, 43, 221, 283, 1149, 1176
FriOI GRGCYC 2 cut(s) 626, 1023
Fsp4HI GCNGC 6 cut(s) 40, 43, 221, 283, 1149, 1176
FspBI CTAG 1 cut(s) 1230
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 40, 43, 221, 283, 1149, 1176
GsuI CTGGAG 3 cut(s) 324, 522, 837
HaeIII GGCC 4 cut(s) 220, 258, 699, 1215
HapII CCGG 2 cut(s) 25, 1203
HgaI GACGC 1 cut(s) 836
HhaI GCGC 1 cut(s) 7
Hin1II CATG 6 cut(s) 313, 800, 1004, 1010, 1274, 1342
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 4 cut(s) 174, 476, 524, 685
HpaII CCGG 2 cut(s) 25, 1203
HphI GGTGA 1 cut(s) 1279
Hpy166II GTNNAC 3 cut(s) 84, 444, 497
Hpy188I TCNGA 4 cut(s) 173, 356, 481, 1281
Hpy188III TCNNGA 5 cut(s) 183, 341, 627, 993, 1032
Hpy8I GTNNAC 3 cut(s) 84, 444, 497
HpyAV CCTTC 9 cut(s) 23, 132, 138, 214, 272, 345, 816, 867, 899
HpyCH4III ACNGT 3 cut(s) 71, 230, 635
HpyCH4IV ACGT 1 cut(s) 440
HpyCH4V TGCA 5 cut(s) 59, 215, 800, 889, 1312
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 48, 676
HpyF3I CTNAG 3 cut(s) 35, 468, 480
HpySE526I ACGT 1 cut(s) 440
Hsp92II CATG 6 cut(s) 313, 800, 1004, 1010, 1274, 1342
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 8 cut(s) 185, 535, 637, 662, 1043, 1070, 1097, 1276
LmnI GCTCC 4 cut(s) 116, 931, 1026, 1297
Lsp1109I GCAGC 3 cut(s) 51, 54, 269
MaeI CTAG 1 cut(s) 1230
MaeII ACGT 1 cut(s) 440
MaeIII GTNAC 1 cut(s) 641
MalI GATC 8 cut(s) 187, 537, 639, 664, 1045, 1072, 1099, 1278
MboI GATC 8 cut(s) 185, 535, 637, 662, 1043, 1070, 1097, 1276
MboII GAAGA 6 cut(s) 108, 201, 265, 356, 413, 485
MflI RGATCY 3 cut(s) 1043, 1070, 1097
MhlI GDGCHC 3 cut(s) 626, 1023, 1237
MlsI TGGCCA 2 cut(s) 699, 1215
MluCI AATT 6 cut(s) 167, 417, 582, 745, 808, 871
MluNI TGGCCA 2 cut(s) 699, 1215
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 875
Mox20I TGGCCA 2 cut(s) 699, 1215
MscI TGGCCA 2 cut(s) 699, 1215
MseI TTAA 2 cut(s) 489, 807
MslI CAYNNNNRTG 2 cut(s) 308, 1005
Msp20I TGGCCA 2 cut(s) 699, 1215
MspI CCGG 2 cut(s) 25, 1203
MspR9I CCNGG 6 cut(s) 501, 774, 816, 840, 933, 1266
Mva1269I GAATGC 1 cut(s) 1314
MvaI CCWGG 6 cut(s) 501, 774, 816, 840, 933, 1266
MwoI GCNNNNNNNGC 3 cut(s) 39, 48, 676
NdeI CATATG 1 cut(s) 922
NdeII GATC 8 cut(s) 185, 535, 637, 662, 1043, 1070, 1097, 1276
NlaIII CATG 6 cut(s) 313, 800, 1004, 1010, 1274, 1342
NlaIV GGNNCC 5 cut(s) 259, 1022, 1222, 1249, 1299
NspV TTCGAA 1 cut(s) 276
PasI CCCWGGG 1 cut(s) 1265
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 1314
PfeI GAWTC 3 cut(s) 174, 524, 685
PflMI CCANNNNNTGG 2 cut(s) 719, 992
PfoI TCCNGGA 1 cut(s) 814
PkrI GCNGC 6 cut(s) 41, 44, 222, 284, 1150, 1177
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PpuMI RGGWCCY 2 cut(s) 1220, 1247
Psp5II RGGWCCY 2 cut(s) 1220, 1247
Psp6I CCWGG 6 cut(s) 499, 772, 814, 838, 931, 1264
PspGI CCWGG 6 cut(s) 499, 772, 814, 838, 931, 1264
PspN4I GGNNCC 5 cut(s) 259, 1022, 1222, 1249, 1299
PspPPI RGGWCCY 2 cut(s) 1220, 1247
PstNI CAGNNNCTG 1 cut(s) 1355
PsuI RGATCY 3 cut(s) 1043, 1070, 1097
RsaI GTAC 3 cut(s) 498, 919, 1337
RsaNI GTAC 3 cut(s) 497, 918, 1336
RseI CAYNNNNRTG 2 cut(s) 308, 1005
SaqAI TTAA 2 cut(s) 489, 807
SatI GCNGC 6 cut(s) 40, 43, 221, 283, 1149, 1176
Sau3AI GATC 8 cut(s) 185, 535, 637, 662, 1043, 1070, 1097, 1276
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 6 cut(s) 501, 774, 816, 840, 933, 1266
SduI GDGCHC 3 cut(s) 626, 1023, 1237
SfcI CTRYAG 1 cut(s) 730
SfuI TTCGAA 1 cut(s) 276
SmiMI CAYNNNNRTG 2 cut(s) 308, 1005
SmlI CTYRAG 2 cut(s) 625, 1236
SmoI CTYRAG 2 cut(s) 625, 1236
Sse9I AATT 6 cut(s) 167, 417, 582, 745, 808, 871
SsiI CCGC 7 cut(s) 19, 90, 147, 221, 596, 1149, 1176
SspMI CTAG 1 cut(s) 1230
StyD4I CCNGG 6 cut(s) 499, 772, 814, 838, 931, 1264
StyI CCWWGG 5 cut(s) 1024, 1216, 1243, 1301, 1360
TaaI ACNGT 3 cut(s) 71, 230, 635
TaiI ACGT 1 cut(s) 443
TaqI TCGA 2 cut(s) 184, 276
TaqII GACCGA 6 cut(s) 1075, 1102, 1129, 1156, 1183, 1210
TasI AATT 6 cut(s) 167, 417, 582, 745, 808, 871
TatI WGTACW 1 cut(s) 917
TauI GCSGC 3 cut(s) 223, 1151, 1178
TfiI GAWTC 3 cut(s) 174, 524, 685
Tru1I TTAA 2 cut(s) 489, 807
Tru9I TTAA 2 cut(s) 489, 807
TscAI CASTG 3 cut(s) 302, 400, 1258
TseI GCWGC 3 cut(s) 39, 42, 282
TspDTI ATGAA 1 cut(s) 849
TspRI CASTG 3 cut(s) 302, 400, 1258
Van91I CCANNNNNTGG 2 cut(s) 719, 992
XagI CCTNNNNNAGG 1 cut(s) 936
XapI RAATTY 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 443
XspI CTAG 1 cut(s) 1230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.