Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015627

Physical Location & Seq

Genomic Coordinates Reverse (-)

8167624 .. 8168250

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAATGGGGAGATTGTTTGGATGCAATGTTAGCCGGGTTATCTTATGAGTTACATGACTTGTATCATGATAATTATCATGCCGATGCATTGGCCCAAGAGTTGATTGCGTTGACAGAAATAGATATCGATAATGACTATCTTATTGAGGATGTTCAACTGATGAACCATAGGGATATTGAGGCGCCTAATCAGGATGTCGATACTGATCAGCCGTTTCAATATCTCTATAGTTCATTAACTGAATATGATACTGAGTATGGCGATCATTTAGTGCTCGAATCGGATATGCTACTGATGGATTTTGAATTCTCCATAGACATGGACACAGATGATAATGGTAACGAGGAGATTGACAGGATTACATTAGAATCCATGGAAACATATATGGCCATGACCATCCCAACAAGTAAATCTGCAATTGAGGAGTTGGAGAAAGTGAGATTCGAGAGTGTGGAAGCTGCAAGACATGCCGGGTTATGTGTTATTTGTATGGAGGACTTTAAAGCAGGAGTTGAAGCTACTTGCTTGCCTTGCCAACACTTCTATCATGGAGATTGCGTTGTTCAGTGGCTGGAGATCAATCACCAATGCCCCTTATGCCGATTTCTAATGCCTCATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009845 GO:0009987 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

209

Amino Acids

24.02

Weight (kDa)

4.05

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	159 - 202	8e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	160 - 202	4.2e-14	Ring finger domain
zf-RING_11	PF17123	161 - 188	8.8e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	161 - 201	2.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	161 - 201	4.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14420
rosa_chinensis	RchiOBHm_Chr4g0407861 RchiOBHm_Chr7g0182241
rosa_laevigata	RLG00000005137
rosa_multiflora	Rmu_sc0000003.1_g000011 Rmu_sc0026766.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271390
rosa_rugosa	Rorug06G0446400
rosa_samantha	Rh4CG153400 Rh4DG140900 Rh7AG049400 Rh7BG049500 Rh7CG050800 Rh7DG048700
rosa_wichuraiana	Rw4G012060 Rw7G004050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	158, 221, 308, 518
AluBI	AGCT	2 cut(s)	461, 521
AluI	AGCT	2 cut(s)	461, 521
Alw21I	GWGCWC	1 cut(s)	279
AlwNI	CAGNNNCTG	1 cut(s)	574
AoxI	GGCC	2 cut(s)	93, 390
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	2 cut(s)	37, 475
AsuHPI	GGTGA	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	2 cut(s)	292, 407
BceAI	ACGGC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	2 cut(s)	37, 475
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	188
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	37, 475
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	37, 475
BmsI	GCATC	2 cut(s)	13, 76
BpmI	CTGGAG	1 cut(s)	596
BpuMI	CCSGG	2 cut(s)	37, 475
Bsa29I	ATCGAT	1 cut(s)	129
BsaBI	GATNNNNATC	2 cut(s)	75, 207
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	375
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bse3DI	GCAATG	1 cut(s)	33
Bse8I	GATNNNNATC	2 cut(s)	75, 207
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	4 cut(s)	28, 157, 202, 399
BseJI	GATNNNNATC	2 cut(s)	75, 207
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	2 cut(s)	362, 440
BseXI	GCAGC	1 cut(s)	448
BshFI	GGCC	2 cut(s)	95, 392
BshNI	GGYRCC	1 cut(s)	184
BshVI	ATCGAT	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	36, 474
BsnI	GGCC	2 cut(s)	95, 392
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	208, 265, 579
Bsp19I	CCATGG	1 cut(s)	375
BspANI	GGCC	2 cut(s)	95, 392
BspCNI	CTCAG	1 cut(s)	247
BspDI	ATCGAT	1 cut(s)	129
BspHI	TCATGA	2 cut(s)	67, 619
BspLI	GGNNCC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	208, 265, 579
BssNI	GRCGYC	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	4 cut(s)	28, 157, 202, 399
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	3 cut(s)	211, 268, 582
BstMBI	GATC	3 cut(s)	208, 265, 579
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 470, 534, 600
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	35, 473
BstSFI	CTRYAG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	322
Bsu15I	ATCGAT	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	95, 392
BsuTUI	ATCGAT	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	4 cut(s)	28, 157, 202, 399
BtsIMutI	CAGTG	1 cut(s)	575
Cac8I	GCNNGC	1 cut(s)	530
CaiI	CAGNNNCTG	1 cut(s)	574
CciI	TCATGA	2 cut(s)	67, 619
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	129
CviAII	CATG	9 cut(s)	56, 68, 80, 322, 376, 394, 470, 551, 620
CviJI	RGCY	7 cut(s)	35, 95, 214, 392, 461, 521, 574
CviKI_1	RGCY	7 cut(s)	35, 95, 214, 392, 461, 521, 574
DdeI	CTNAG	1 cut(s)	255
DinI	GGCGCC	1 cut(s)	186
DpnI	GATC	3 cut(s)	210, 267, 581
DpnII	GATC	3 cut(s)	208, 265, 579
DraI	TTTAAA	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	308
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	91
EgeI	GGCGCC	1 cut(s)	186
EheI	GGCGCC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	9 cut(s)	59, 71, 83, 325, 379, 397, 473, 554, 623
FatI	CATG	9 cut(s)	55, 67, 79, 321, 375, 393, 469, 550, 619
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	4 cut(s)	35, 164, 209, 386
Fsp4HI	GCNGC	1 cut(s)	462
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	596
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	95, 392
HapII	CCGG	2 cut(s)	36, 474
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	9 cut(s)	59, 71, 83, 325, 379, 397, 473, 554, 623
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	3 cut(s)	281, 371, 444
HpaII	CCGG	2 cut(s)	36, 474
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	4 cut(s)	68, 194, 448, 620
Hpy8I	GTNNAC	1 cut(s)	114
HpyCH4V	TGCA	4 cut(s)	26, 89, 419, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 470, 534, 600
HpyF3I	CTNAG	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	9 cut(s)	59, 71, 83, 325, 379, 397, 473, 554, 623
HspAI	GCGC	1 cut(s)	185
KasI	GGCGCC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	208, 265, 579
LpnPI	CCDG	6 cut(s)	49, 179, 343, 487, 495, 560
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	2 cut(s)	13, 76
MaeIII	GTNAC	2 cut(s)	51, 341
MalI	GATC	3 cut(s)	210, 267, 581
MboI	GATC	3 cut(s)	208, 265, 579
MfeI	CAATTG	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	3 cut(s)	73, 308, 420
MluNI	TGGCCA	1 cut(s)	392
Mly113I	GGCGCC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	6 cut(s)	142, 175, 340, 418, 490, 627
Mox20I	TGGCCA	1 cut(s)	392
Mph1103I	ATGCAT	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	2 cut(s)	239, 504
MslI	CAYNNNNRTG	2 cut(s)	84, 320
Msp20I	TGGCCA	1 cut(s)	392
MspI	CCGG	2 cut(s)	36, 474
MspR9I	CCNGG	2 cut(s)	37, 475
MunI	CAATTG	1 cut(s)	420
MwoI	GCNNNNNNNGC	4 cut(s)	32, 470, 534, 600
NarI	GGCGCC	1 cut(s)	185
NciI	CCSGG	2 cut(s)	37, 475
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	3 cut(s)	208, 265, 579
NlaIII	CATG	9 cut(s)	59, 71, 83, 325, 379, 397, 473, 554, 623
NlaIV	GGNNCC	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	1 cut(s)	473
PagI	TCATGA	2 cut(s)	67, 619
PfeI	GAWTC	3 cut(s)	281, 371, 444
PkrI	GCNGC	1 cut(s)	463
PluTI	GGCGCC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	574
RseI	CAYNNNNRTG	2 cut(s)	84, 320
SaqAI	TTAA	2 cut(s)	239, 504
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	3 cut(s)	208, 265, 579
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	37, 475
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	2 cut(s)	463, 523
SfaNI	GCATC	2 cut(s)	13, 76
SfcI	CTRYAG	1 cut(s)	229
SfoI	GGCGCC	1 cut(s)	186
SmiMI	CAYNNNNRTG	2 cut(s)	84, 320
Sse9I	AATT	3 cut(s)	73, 308, 420
SspDI	GGCGCC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	35, 473
StyI	CCWWGG	1 cut(s)	375
TaqI	TCGA	4 cut(s)	129, 201, 279, 447
TasI	AATT	3 cut(s)	73, 308, 420
TfiI	GAWTC	3 cut(s)	281, 371, 444
Tru1I	TTAA	2 cut(s)	239, 504
Tru9I	TTAA	2 cut(s)	239, 504
TscAI	CASTG	1 cut(s)	575
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	179, 225
TspRI	CASTG	1 cut(s)	575
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.