Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015627

Physical Location & Seq

Genomic Coordinates Reverse (-)

30150791 .. 30151129

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37908

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCTGAACGAATTGCTAATGGAAACATATGATAATGGTAATGAGGAGATTGATGGGGCTACATTGGAATCCATGGAAACATATATCGCCATGACCATCCCAGCAAGTAAATCAGCGATAGAGGATTTGAAGAAAGTGAGACTCGAGAGTGTGGAAACTGCGAGACATGCTGGGTTGTGTAGTATTTGTTTGGAGGACTTTAAAGCCGGAGTTGAAGCTACTCGCTTGCCTTGCTTACATTTTTTTCATGGAGATTGCGTTGTTCGGTGGTTGGAGATCAATCATCAATGCCCCTTGTGCCGGTTTCCAATGCCTCATGATGGAACATCAATCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

112

Amino Acids

12.63

Weight (kDa)

4.84

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	59 - 101	2.4e-15	Ring finger domain
zf-C3HC4_2	PF13923	60 - 100	3.2e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	60 - 87	5.7e-10	RING-like zinc finger
zf-C3HC4	PF00097	60 - 100	1.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	60 - 98	3.2e-07	RING-type zinc-finger
zf-rbx1	PF12678	60 - 101	2.4e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14420
rosa_chinensis	RchiOBHm_Chr4g0407861 RchiOBHm_Chr7g0182241
rosa_laevigata	RLG00000005137
rosa_multiflora	Rmu_sc0000003.1_g000011 Rmu_sc0026766.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271390
rosa_rugosa	Rorug06G0446400
rosa_samantha	Rh4CG153400 Rh4DG140900 Rh7AG049400 Rh7BG049500 Rh7CG050800 Rh7DG048700
rosa_wichuraiana	Rw4G012060 Rw7G004050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	300, 320
AgsI	TTSAA	2 cut(s)	130, 215
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw26I	GTCTC	2 cut(s)	133, 157
Ama87I	CYCGRG	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	143
BccI	CCATC	3 cut(s)	47, 104, 314
BcoDI	GTCTC	2 cut(s)	133, 157
BmeT110I	CYCGRG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 320
Bse118I	RCCGGY	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	300, 320
BseRI	GAGGAG	1 cut(s)	59
BseYI	CCCAGC	2 cut(s)	100, 170
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	207, 301
BslI	CCNNNNNNNGG	2 cut(s)	300, 320
BsmAI	GTCTC	2 cut(s)	133, 157
BsoBI	CYCGRG	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	276
Bsp19I	CCATGG	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	227
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	96
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	2 cut(s)	133, 157
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 231, 297
BstNSI	RCATGY	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	227
CciI	TCATGA	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	300
CviAII	CATG	5 cut(s)	73, 91, 167, 248, 317
CviJI	RGCY	3 cut(s)	59, 206, 218
CviKI_1	RGCY	3 cut(s)	59, 206, 218
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
DraI	TTTAAA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	5 cut(s)	76, 94, 170, 251, 320
FaiI	YATR	9 cut(s)	28, 30, 74, 82, 84, 92, 168, 249, 318
FatI	CATG	5 cut(s)	72, 90, 166, 247, 316
FauNDI	CATATG	1 cut(s)	28
FokI	GGATG	1 cut(s)	83
GsaI	CCCAGC	2 cut(s)	104, 174
HapII	CCGG	2 cut(s)	207, 301
Hin1II	CATG	5 cut(s)	76, 94, 170, 251, 320
HinfI	GANTC	2 cut(s)	68, 141
HpaII	CCGG	2 cut(s)	207, 301
Hpy188III	TCNNGA	2 cut(s)	145, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 231, 297
Hsp92II	CATG	5 cut(s)	76, 94, 170, 251, 320
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	4 cut(s)	114, 156, 220, 314
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	142
MluCI	AATT	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	4 cut(s)	37, 115, 187, 324
MseI	TTAA	2 cut(s)	201, 337
MspI	CCGG	2 cut(s)	207, 301
MwoI	GCNNNNNNNGC	3 cut(s)	167, 231, 297
NcoI	CCATGG	1 cut(s)	72
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	5 cut(s)	76, 94, 170, 251, 320
NspI	RCATGY	1 cut(s)	170
PaeR7I	CTCGAG	1 cut(s)	143
PagI	TCATGA	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	68
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PspFI	CCCAGC	2 cut(s)	100, 170
SaqAI	TTAA	2 cut(s)	201, 337
Sau3AI	GATC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	135
SetI	ASST	1 cut(s)	220
Sfr274I	CTCGAG	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	1 cut(s)	144
TasI	AATT	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	201, 337
Tru9I	TTAA	2 cut(s)	201, 337
TspDTI	ATGAA	1 cut(s)	236
XceI	RCATGY	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.