Rw4G012060
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
28371033 .. 28371722
690 bp
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UTR
Exon/CDS
Intron
Rw4G012060.1

Sequence Viewer

Length: 627 bp
ATGGATGACTATTTTGATCATGATAGGGTTGCAAGGCAAAGAGGTTTTAATTTAATCGTTGAGCCAGATAATGACGATAGCGAGATCGAATGTGGAGATCCTTTGGATGCAATGTTAGCCAGGTTATATTATGATATTAATCATGTGAATGTGGCGGTTATCGGCATCCATGAAAACAATGATGATCATCATATTGAGGATTTTCAGCTGATGAACTATAGGGATATTGAGGCGGCTGATCAGTATCATAATTGGCCACCTCATGAATATCCCTGTAATTCATCCGCTGATCATGATACTGAGGATGAAGATTATTTTGTACTGAACGAATTGCTAATGGAAACAGATGATAATGGTAATGAGGAGATTGATGGGGCTACATTGGAATCCATGGAAACATATATGGCCATGACCATCCCAGCAAGTAAATCAGTGATAGTGGATTTGAAGAAAGTGAGACTTGAGAGTGTGGAAATTGCGAGACATGCTGGGTTATGTATTGAAGCTACTCGCTTGCCTTGCTTACATTTTTTTTATGGAGATTGTGTTGTTCGGTGGCTGGAGATCAATCATCAATGCCCCTTGTGCCGATTTCCAATGCCTCATCATGGAACATCAATCTATTAA

Protein Analysis

208

Amino Acids

24.1

Weight (kDa)

4.41

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 169 - 197 2.3e-07 Ring finger domain
zf-rbx1 PF12678 173 - 197 8.6e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 155, 233, 285
AclWI GGATC 1 cut(s) 92
AcoI YGGCCR 2 cut(s) 254, 405
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 608
AgsI TTSAA 2 cut(s) 448, 503
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 208, 506
AluI AGCT 2 cut(s) 208, 506
Alw26I GTCTC 2 cut(s) 451, 475
AlwI GGATC 1 cut(s) 92
AoxI GGCC 2 cut(s) 254, 405
AseI ATTAAT 1 cut(s) 138
BalI TGGCCA 2 cut(s) 256, 407
BccI CCATC 2 cut(s) 365, 422
BciT130I CCWGG 1 cut(s) 121
BclI TGATCA 4 cut(s) 16, 184, 238, 289
BcoDI GTCTC 2 cut(s) 451, 475
BfmI CTRYAG 1 cut(s) 217
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 2 cut(s) 97, 174
BpmI CTGGAG 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 482
BsaBI GATNNNNATC 3 cut(s) 138, 186, 243
BsaJI CCNNGG 1 cut(s) 390
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 1 cut(s) 608
Bse3DI GCAATG 1 cut(s) 117
Bse8I GATNNNNATC 3 cut(s) 138, 186, 243
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 6 cut(s) 10, 112, 165, 281, 310, 414
BseJI GATNNNNATC 3 cut(s) 138, 186, 243
BseLI CCNNNNNNNGG 1 cut(s) 608
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 377
BseYI CCCAGC 2 cut(s) 418, 488
BshFI GGCC 2 cut(s) 256, 407
BslI CCNNNNNNNGG 1 cut(s) 608
BsmAI GTCTC 2 cut(s) 451, 475
BsnI GGCC 2 cut(s) 256, 407
Bsp143I GATC 7 cut(s) 16, 84, 97, 184, 238, 289, 564
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 3 cut(s) 155, 233, 285
BspANI GGCC 2 cut(s) 256, 407
BspCNI CTCAG 1 cut(s) 292
BspHI TCATGA 3 cut(s) 19, 262, 292
BspPI GGATC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 7 cut(s) 16, 84, 97, 184, 238, 289, 564
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 515
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 6 cut(s) 10, 112, 165, 281, 310, 414
BstKTI GATC 7 cut(s) 19, 87, 100, 187, 241, 292, 567
BstMAI GTCTC 2 cut(s) 451, 475
BstMBI GATC 7 cut(s) 16, 84, 97, 184, 238, 289, 564
BstMWI GCNNNNNNNGC 4 cut(s) 116, 485, 519, 585
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 2 cut(s) 256, 407
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 6 cut(s) 10, 112, 165, 281, 310, 414
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 515
CciI TCATGA 3 cut(s) 19, 262, 292
Csp6I GTAC 1 cut(s) 320
CviAII CATG 9 cut(s) 20, 143, 170, 263, 293, 391, 409, 485, 608
CviJI RGCY 9 cut(s) 64, 119, 208, 236, 256, 377, 407, 506, 559
CviKI_1 RGCY 9 cut(s) 64, 119, 208, 236, 256, 377, 407, 506, 559
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 1 cut(s) 300
DpnI GATC 7 cut(s) 18, 86, 99, 186, 240, 291, 566
DpnII GATC 7 cut(s) 16, 84, 97, 184, 238, 289, 564
EaeI YGGCCR 2 cut(s) 254, 405
Eco130I CCWWGG 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 9 cut(s) 23, 146, 173, 266, 296, 394, 412, 488, 611
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 9 cut(s) 19, 142, 169, 262, 292, 390, 408, 484, 607
FbaI TGATCA 4 cut(s) 16, 184, 238, 289
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 6 cut(s) 17, 119, 152, 268, 317, 401
Fsp4HI GCNGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 234
GsaI CCCAGC 2 cut(s) 422, 492
GsuI CTGGAG 1 cut(s) 581
HaeIII GGCC 2 cut(s) 256, 407
Hin1II CATG 9 cut(s) 23, 146, 173, 266, 296, 394, 412, 488, 611
HinfI GANTC 1 cut(s) 386
Hpy188III TCNNGA 3 cut(s) 20, 263, 293
HpyCH4V TGCA 2 cut(s) 32, 110
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 485, 519, 585
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 9 cut(s) 23, 146, 173, 266, 296, 394, 412, 488, 611
Ksp22I TGATCA 4 cut(s) 16, 184, 238, 289
Kzo9I GATC 7 cut(s) 16, 84, 97, 184, 238, 289, 564
LpnPI CCDG 7 cut(s) 78, 106, 133, 286, 432, 474, 545
LweI GCATC 2 cut(s) 97, 174
MalI GATC 7 cut(s) 18, 86, 99, 186, 240, 291, 566
MboI GATC 7 cut(s) 16, 84, 97, 184, 238, 289, 564
MboII GAAGA 2 cut(s) 320, 460
MflI RGATCY 1 cut(s) 97
MlsI TGGCCA 2 cut(s) 256, 407
MluCI AATT 5 cut(s) 49, 250, 277, 329, 474
MluNI TGGCCA 2 cut(s) 256, 407
MnlI CCTC 7 cut(s) 35, 190, 223, 270, 295, 355, 612
Mox20I TGGCCA 2 cut(s) 256, 407
MscI TGGCCA 2 cut(s) 256, 407
MseI TTAA 4 cut(s) 48, 53, 138, 625
MslI CAYNNNNRTG 1 cut(s) 147
Msp20I TGGCCA 2 cut(s) 256, 407
MspA1I CMGCKG 2 cut(s) 208, 287
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 4 cut(s) 116, 485, 519, 585
NcoI CCATGG 1 cut(s) 390
NdeII GATC 7 cut(s) 16, 84, 97, 184, 238, 289, 564
NlaIII CATG 9 cut(s) 23, 146, 173, 266, 296, 394, 412, 488, 611
NspI RCATGY 1 cut(s) 488
PagI TCATGA 3 cut(s) 19, 262, 292
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 1 cut(s) 235
PshBI ATTAAT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 119
PspFI CCCAGC 2 cut(s) 418, 488
PspGI CCWGG 1 cut(s) 119
PsuI RGATCY 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 4 cut(s) 48, 53, 138, 625
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 7 cut(s) 16, 84, 97, 184, 238, 289, 564
ScrFI CCNGG 1 cut(s) 121
SetI ASST 5 cut(s) 46, 125, 210, 262, 508
SfaNI GCATC 2 cut(s) 97, 174
SfcI CTRYAG 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 5 cut(s) 49, 250, 277, 329, 474
SsiI CCGC 3 cut(s) 155, 233, 285
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 390
TaqI TCGA 1 cut(s) 87
TasI AATT 5 cut(s) 49, 250, 277, 329, 474
TatI WGTACW 1 cut(s) 319
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 4 cut(s) 48, 53, 138, 625
Tru9I TTAA 4 cut(s) 48, 53, 138, 625
TscAI CASTG 1 cut(s) 438
TspDTI ATGAA 5 cut(s) 186, 227, 270, 279, 321
TspRI CASTG 1 cut(s) 438
VspI ATTAAT 1 cut(s) 138
XceI RCATGY 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.