Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015627

Physical Location & Seq

Genomic Coordinates Forward (+)

3746888 .. 3748100

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG048700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGTGTTCCACGGCAGGTGCAGCAAACTATTGTTGCAAAGATATCTGAGTTTCTTGTTCTTGGGAATATGGACCGCACCGCTAATAATGATAATGATGATAGCGAGATCGAATGTGGAGATCCTTTGGATGCAATGTTAGCCAGGTTATATTATGATATTAATCATGTGGATGCGGCGGTTATCAGTATCCATGAGTTGCTTCAAAGGAATCTTCCTACGTTCACAGAAACAAATGATGATCATCATATTAAGGATTTTCAGCTGATGAACTATAGGGATATTGAGGCGGCTGATCAGTATCATAATCGACCACCTCATGAATATCCCTATAATTCGTCCGCTGATCATGATACTGAGGATGAAGATCATTTTGTGCTGGACGAATTGCTAATGGAAACATATGATAATGGTAATGAGGAGGTCGTCTATGACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009845 GO:0009987 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

146

Amino Acids

16.92

Weight (kDa)

4.18

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14420
rosa_chinensis	RchiOBHm_Chr4g0407861 RchiOBHm_Chr7g0182241
rosa_laevigata	RLG00000005137
rosa_multiflora	Rmu_sc0000003.1_g000011 Rmu_sc0026766.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271390
rosa_rugosa	Rorug06G0446400
rosa_samantha	Rh4CG153400 Rh4DG140900 Rh7AG049400 Rh7BG049500 Rh7CG050800 Rh7DG048700
rosa_wichuraiana	Rw4G012060 Rw7G004050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	7
Acc36I	ACCTGC	1 cut(s)	7
AciI	CCGC	6 cut(s)	76, 81, 176, 179, 290, 342
AclWI	GGATC	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
AlwI	GGATC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	22
AseI	ATTAAT	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	200
BclI	TGATCA	3 cut(s)	241, 295, 346
BfmI	CTRYAG	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	7
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	3 cut(s)	23, 177, 291
BlsI	GCNGC	3 cut(s)	24, 178, 292
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	2 cut(s)	121, 163
BsaBI	GATNNNNATC	4 cut(s)	162, 243, 300, 366
BsaJI	CCNNGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	141
Bse8I	GATNNNNATC	4 cut(s)	162, 243, 300, 366
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	3 cut(s)	136, 178, 367
BseJI	GATNNNNATC	4 cut(s)	162, 243, 300, 366
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	39, 348
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	41
Bsp143I	GATC	6 cut(s)	108, 121, 241, 295, 346, 367
BspACI	CCGC	6 cut(s)	76, 81, 176, 179, 290, 342
BspCNI	CTCAG	2 cut(s)	40, 349
BspHI	TCATGA	2 cut(s)	319, 349
BspMI	ACCTGC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	6 cut(s)	108, 121, 241, 295, 346, 367
Bst2UI	CCWGG	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	48, 357
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	3 cut(s)	136, 178, 367
BstKTI	GATC	6 cut(s)	111, 124, 244, 298, 349, 370
BstMBI	GATC	6 cut(s)	108, 121, 241, 295, 346, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 140
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	136, 178, 367
BveI	ACCTGC	1 cut(s)	7
CciI	TCATGA	2 cut(s)	319, 349
Cfr13I	GGNCC	1 cut(s)	73
CviAII	CATG	4 cut(s)	167, 194, 320, 350
CviJI	RGCY	3 cut(s)	143, 265, 293
CviKI_1	RGCY	3 cut(s)	143, 265, 293
DdeI	CTNAG	2 cut(s)	48, 357
DpnI	GATC	6 cut(s)	110, 123, 243, 297, 348, 369
DpnII	GATC	6 cut(s)	108, 121, 241, 295, 346, 367
Eco32I	GATATC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	45
FaeI	CATG	4 cut(s)	170, 197, 323, 353
FatI	CATG	4 cut(s)	166, 193, 319, 349
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	3 cut(s)	241, 295, 346
Fnu4HI	GCNGC	3 cut(s)	23, 177, 291
FokI	GGATG	3 cut(s)	143, 185, 374
Fsp4HI	GCNGC	3 cut(s)	23, 177, 291
GluI	GCNGC	3 cut(s)	23, 177, 291
Hin1II	CATG	4 cut(s)	170, 197, 323, 353
HinfI	GANTC	2 cut(s)	211, 434
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	2 cut(s)	320, 350
Hpy8I	GTNNAC	1 cut(s)	225
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	22, 38, 134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 140
HpyF3I	CTNAG	2 cut(s)	48, 357
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	170, 197, 323, 353
Ksp22I	TGATCA	3 cut(s)	241, 295, 346
Kzo9I	GATC	6 cut(s)	108, 121, 241, 295, 346, 367
LpnPI	CCDG	4 cut(s)	2, 130, 157, 365
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	121, 163
MaeII	ACGT	1 cut(s)	221
MalI	GATC	6 cut(s)	110, 123, 243, 297, 348, 369
MboI	GATC	6 cut(s)	108, 121, 241, 295, 346, 367
MboII	GAAGA	2 cut(s)	206, 377
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	2 cut(s)	334, 386
MlyI	GAGTC	1 cut(s)	428
MnlI	CCTC	5 cut(s)	280, 327, 352, 412, 415
MseI	TTAA	2 cut(s)	162, 252
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	265, 344
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	22, 140
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	6 cut(s)	108, 121, 241, 295, 346, 367
NlaIII	CATG	4 cut(s)	170, 197, 323, 353
PagI	TCATGA	2 cut(s)	319, 349
PaqCI	CACCTGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	24, 178, 292
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
PshBI	ATTAAT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	162, 252
SatI	GCNGC	3 cut(s)	23, 177, 291
Sau3AI	GATC	6 cut(s)	108, 121, 241, 295, 346, 367
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	6 cut(s)	21, 149, 224, 267, 319, 426
SfaNI	GCATC	2 cut(s)	121, 163
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	2 cut(s)	334, 386
SsiI	CCGC	6 cut(s)	76, 81, 176, 179, 290, 342
StyD4I	CCNGG	1 cut(s)	143
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	2 cut(s)	111, 310
TasI	AATT	2 cut(s)	334, 386
TauI	GCSGC	2 cut(s)	179, 293
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	162, 252
Tru9I	TTAA	2 cut(s)	162, 252
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	3 cut(s)	284, 336, 378
VpaK11BI	GGWCC	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.