Rh7BG049500

Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015627
Physical Location & Seq
Forward (+)
3238815 .. 3240237
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG049500.1

Sequence Viewer

Length: 831 bp
ATGTCAGGCGGAGTTGCAGTTCCTTCTGTGAGCGACGGCCAGGCTTTATTTAGACACGACCACTACGTCGACTATCGCACCCAGGTAGAGTGGGTTCCAATCCCACAGGGAACTACTAGCCTTCCCATCCATATTTATCTCTTCAAGTCAATCGAAACCGAACCGAGCCAAACCATTACCTTCCTTCACAGCAACTATGATATGCAGTTCACTGAGGTCACTAGGGTTCTTGGAGACATGGGTGTTCCACGGCAGGTGCAGCAAACTATTGTTGCAAAGATATCTGAGTTTCTTGTTCTTGGGAATATGGACCGCACCGCTAATAATGATTATATTGATGTGACCATAATACACGATGCAGCATACATAGATCTAAATATTGTTCCCAGTGATGAGGAAGATGATTCATATAGCTTTGATCAAATGTACATGGATGACTATTTTGATCATGATAGGGTTGCAAGGCAAAGAGGTTTTGATTTAATCGTTGAGCCAGATAATGACGATAGCGAGATCGAATGTAGAGATCCTTTGGATGCAATGTTAGCCAGGTTATATTATGATATTAATCATGTGGATGCGGCGGCGGTTATCGGCATCCATGAGTTGCTTCAAAGGAATCTTCCTACGTTCACAGAAACAAATGATGATCATCATATTGAGGATTTTCAGCTGATGAACTATAGGGATATTGAGGCGGCTAATCAGTATCATAATCGGCCACCTCATGAATATCCCTATAATTCGTCCGCTGATCATGATACTGAGGATGAAGATTATTTTGTGCTGGACGAATTGCTAATGGAAACAGATGATAATGGTCGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

276

Amino Acids

31.95

Weight (kDa)

4.21

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
AasI GACNNNNNNGTC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 69
AciI CCGC 8 cut(s) 9, 313, 318, 581, 584, 587, 698, 750
AclWI GGATC 1 cut(s) 521
AcoI YGGCCR 2 cut(s) 37, 719
AfaI GTAC 1 cut(s) 428
AgsI TTSAA 2 cut(s) 145, 614
AjnI CCWGG 3 cut(s) 39, 81, 548
AloI GAACNNNNNNTCC 1 cut(s) 35
AluBI AGCT 2 cut(s) 414, 673
AluI AGCT 2 cut(s) 414, 673
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 521
AoxI GGCC 2 cut(s) 37, 719
ApeKI GCWGC 2 cut(s) 259, 359
AseI ATTAAT 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 310
AvaII GGWCC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 271, 371
BccI CCATC 1 cut(s) 134
BceAI ACGGC 2 cut(s) 52, 266
BciT130I CCWGG 3 cut(s) 41, 83, 550
BclI TGATCA 4 cut(s) 418, 445, 649, 754
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 2 cut(s) 117, 222
BfmI CTRYAG 1 cut(s) 682
BfuAI ACCTGC 1 cut(s) 244
BglII AGATCT 1 cut(s) 370
BisI GCNGC 5 cut(s) 260, 360, 582, 585, 699
BlsI GCNGC 5 cut(s) 261, 361, 583, 586, 700
Bme1390I CCNGG 3 cut(s) 41, 83, 550
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 3 cut(s) 41, 83, 550
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 4 cut(s) 346, 526, 568, 606
BmuI ACTGGG 1 cut(s) 381
BsaBI GATNNNNATC 2 cut(s) 567, 651
BsaJI CCNNGG 2 cut(s) 81, 248
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 2 cut(s) 567, 651
BseBI CCWGG 3 cut(s) 41, 83, 550
BseDI CCNNGG 2 cut(s) 81, 248
BseGI GGATG 6 cut(s) 126, 439, 541, 583, 597, 775
BseJI GATNNNNATC 2 cut(s) 567, 651
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 3 cut(s) 204, 276, 756
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 2 cut(s) 271, 371
BsgI GTGCAG 1 cut(s) 278
BshFI GGCC 2 cut(s) 39, 721
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 2 cut(s) 39, 721
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 7 cut(s) 370, 418, 445, 513, 526, 649, 754
BspACI CCGC 8 cut(s) 9, 313, 318, 581, 584, 587, 698, 750
BspANI GGCC 2 cut(s) 39, 721
BspCNI CTCAG 3 cut(s) 205, 277, 757
BspHI TCATGA 3 cut(s) 448, 727, 757
BspLI GGNNCC 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 546
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 2 cut(s) 81, 248
BssMI GATC 7 cut(s) 370, 418, 445, 513, 526, 649, 754
Bst2UI CCWGG 3 cut(s) 41, 83, 550
Bst6I CTCTTC 1 cut(s) 146
BstAUI TGTACA 1 cut(s) 426
BstDEI CTNAG 3 cut(s) 213, 285, 765
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 6 cut(s) 126, 439, 541, 583, 597, 775
BstKTI GATC 7 cut(s) 373, 421, 448, 516, 529, 652, 757
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 7 cut(s) 370, 418, 445, 513, 526, 649, 754
BstMWI GCNNNNNNNGC 2 cut(s) 259, 545
BstNI CCWGG 3 cut(s) 41, 83, 550
BstSCI CCNGG 3 cut(s) 39, 81, 548
BstSFI CTRYAG 1 cut(s) 682
BstV1I GCAGC 2 cut(s) 271, 371
BstX2I RGATCY 2 cut(s) 370, 526
BstYI RGATCY 2 cut(s) 370, 526
BsuRI GGCC 2 cut(s) 39, 721
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 6 cut(s) 126, 439, 541, 583, 597, 775
BtsIMutI CAGTG 2 cut(s) 210, 394
BveI ACCTGC 1 cut(s) 244
CciI TCATGA 3 cut(s) 448, 727, 757
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 427
CviAII CATG 7 cut(s) 238, 430, 449, 572, 602, 728, 758
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 3 cut(s) 213, 285, 765
DpnI GATC 7 cut(s) 372, 420, 447, 515, 528, 651, 756
DpnII GATC 7 cut(s) 370, 418, 445, 513, 526, 649, 754
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
EaeI YGGCCR 2 cut(s) 37, 719
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 24
Eco32I GATATC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 310
EcoRII CCWGG 3 cut(s) 39, 81, 548
EcoRV GATATC 1 cut(s) 282
FaeI CATG 7 cut(s) 241, 433, 452, 575, 605, 731, 761
FatI CATG 7 cut(s) 237, 429, 448, 571, 601, 727, 757
FbaI TGATCA 4 cut(s) 418, 445, 649, 754
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 5 cut(s) 260, 360, 582, 585, 699
FokI GGATG 6 cut(s) 113, 446, 548, 584, 590, 782
Fsp4HI GCNGC 5 cut(s) 260, 360, 582, 585, 699
FspBI CTAG 2 cut(s) 117, 222
GluI GCNGC 5 cut(s) 260, 360, 582, 585, 699
HaeIII GGCC 2 cut(s) 39, 721
Hin1II CATG 7 cut(s) 241, 433, 452, 575, 605, 731, 761
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 2 cut(s) 404, 619
Hpy166II GTNNAC 3 cut(s) 70, 210, 633
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 3 cut(s) 449, 728, 758
Hpy8I GTNNAC 3 cut(s) 70, 210, 633
Hpy99I CGWCG 2 cut(s) 38, 71
HpyAV CCTTC 4 cut(s) 33, 131, 190, 194
HpyCH4IV ACGT 2 cut(s) 66, 629
HpyCH4V TGCA 7 cut(s) 17, 205, 259, 275, 359, 461, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 545
HpyF3I CTNAG 3 cut(s) 213, 285, 765
HpySE526I ACGT 2 cut(s) 66, 629
Hsp92II CATG 7 cut(s) 241, 433, 452, 575, 605, 731, 761
Ksp22I TGATCA 4 cut(s) 418, 445, 649, 754
Kzo9I GATC 7 cut(s) 370, 418, 445, 513, 526, 649, 754
Lsp1109I GCAGC 2 cut(s) 271, 371
LweI GCATC 4 cut(s) 346, 526, 568, 606
MaeI CTAG 2 cut(s) 117, 222
MaeII ACGT 2 cut(s) 66, 629
MaeIII GTNAC 2 cut(s) 217, 340
MalI GATC 7 cut(s) 372, 420, 447, 515, 528, 651, 756
MboI GATC 7 cut(s) 370, 418, 445, 513, 526, 649, 754
MboII GAAGA 4 cut(s) 133, 410, 614, 785
MflI RGATCY 2 cut(s) 370, 526
MluCI AATT 2 cut(s) 742, 794
MnlI CCTC 7 cut(s) 208, 388, 464, 655, 688, 735, 760
MseI TTAA 2 cut(s) 482, 567
MslI CAYNNNNRTG 1 cut(s) 576
MspA1I CMGCKG 2 cut(s) 673, 752
MspR9I CCNGG 3 cut(s) 41, 83, 550
MvaI CCWGG 3 cut(s) 41, 83, 550
MwoI GCNNNNNNNGC 2 cut(s) 259, 545
NdeII GATC 7 cut(s) 370, 418, 445, 513, 526, 649, 754
NlaIII CATG 7 cut(s) 241, 433, 452, 575, 605, 731, 761
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 2 cut(s) 217, 340
PagI TCATGA 3 cut(s) 448, 727, 757
PaqCI CACCTGC 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 2 cut(s) 404, 619
PkrI GCNGC 5 cut(s) 261, 361, 583, 586, 700
PshBI ATTAAT 1 cut(s) 567
Psp6I CCWGG 3 cut(s) 39, 81, 548
PspGI CCWGG 3 cut(s) 39, 81, 548
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 310
PsrI GAACNNNNNNTAC 2 cut(s) 78, 110
PsuI RGATCY 2 cut(s) 370, 526
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 576
SalI GTCGAC 1 cut(s) 68
SaqAI TTAA 2 cut(s) 482, 567
SatI GCNGC 5 cut(s) 260, 360, 582, 585, 699
Sau3AI GATC 7 cut(s) 370, 418, 445, 513, 526, 649, 754
Sau96I GGNCC 1 cut(s) 310
ScrFI CCNGG 3 cut(s) 41, 83, 550
SfaNI GCATC 4 cut(s) 346, 526, 568, 606
SfcI CTRYAG 1 cut(s) 682
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 576
Sse9I AATT 2 cut(s) 742, 794
SsiI CCGC 8 cut(s) 9, 313, 318, 581, 584, 587, 698, 750
SspI AATATT 1 cut(s) 379
SspMI CTAG 2 cut(s) 117, 222
StyD4I CCNGG 3 cut(s) 39, 81, 548
TaiI ACGT 2 cut(s) 69, 632
TaqI TCGA 3 cut(s) 69, 153, 516
TasI AATT 2 cut(s) 742, 794
TatI WGTACW 1 cut(s) 426
TauI GCSGC 3 cut(s) 584, 587, 701
TfiI GAWTC 2 cut(s) 404, 619
Tru1I TTAA 2 cut(s) 482, 567
Tru9I TTAA 2 cut(s) 482, 567
TscAI CASTG 2 cut(s) 217, 394
TseFI GTSAC 2 cut(s) 217, 340
TseI GCWGC 2 cut(s) 259, 359
Tsp45I GTSAC 2 cut(s) 217, 340
TspDTI ATGAA 4 cut(s) 396, 692, 744, 786
TspRI CASTG 2 cut(s) 217, 394
VpaK11BI GGWCC 1 cut(s) 310
VspI ATTAAT 1 cut(s) 567
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 2 cut(s) 117, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.