Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015627

Physical Location & Seq

Genomic Coordinates Reverse (-)

27932031 .. 27935346

Gene Structure 3316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG140900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCAGTTCACTGAGGTCACTAGGGTTCTTGAAGACATGAGTGTTCCACGGCAGGTGCAGCAAACTATTGTTGCAAAGATATCTGAGTTTCTTGTTCTTGGGAATATGGACCGCATAGCTAATAATGGTTATATTGATGTGACCATAATACATGATGCAGCATACATAGATCTAAATATTGTTCCCAGTGATGAGGAAGATAATTCATATAGCTTTGATCAAATGTACATGGATGACTATTTTGATCATGATAGGGTTGCAAGGCAAAGAGGCTTTGATTTAATCGTTGAGCCAGATAATGACGATAGCGAGATCGAATGTGGAGATCCTTTGGATGCAATGTTAGCCAGTCGACCCGGTTTGCCCGACCCGACCCAATTACATTGTCTGATCATAACTTCGCCATCCAACGACCAATCTGGACGCCACCTGTATGTGGTTCTTGAGAGTATCCAAAGCAAATCAGTTTGCTTAAGTGATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

161

Amino Acids

18.24

Weight (kDa)

4.18

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14420
rosa_chinensis	RchiOBHm_Chr4g0407861 RchiOBHm_Chr7g0182241
rosa_laevigata	RLG00000005137
rosa_multiflora	Rmu_sc0000003.1_g000011 Rmu_sc0026766.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271390
rosa_rugosa	Rorug06G0446400
rosa_samantha	Rh4CG153400 Rh4DG140900 Rh7AG049400 Rh7BG049500 Rh7CG050800 Rh7DG048700
rosa_wichuraiana	Rw4G012060 Rw7G004050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	352
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	424
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	436
AflII	CTTAAG	1 cut(s)	472
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	2 cut(s)	119, 213
AluI	AGCT	2 cut(s)	119, 213
AlwI	GGATC	1 cut(s)	320
ApeKI	GCWGC	2 cut(s)	58, 158
AspS9I	GGNCC	1 cut(s)	109
AsuC2I	CCSGG	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	70, 170
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	461
BclI	TGATCA	3 cut(s)	217, 244, 390
BcnI	CCSGG	1 cut(s)	357
BfaI	CTAG	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	461
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	59, 159
BlsI	GCNGC	2 cut(s)	60, 160
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	357
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	145, 325
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	186, 348
Bse3DI	GCAATG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	3 cut(s)	238, 340, 404
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	186, 348
BseXI	GCAGC	2 cut(s)	70, 170
BsgI	GTGCAG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	436
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	6 cut(s)	169, 217, 244, 312, 325, 390
BspACI	CCGC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	4, 76
BspHI	TCATGA	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	320
BspTI	CTTAAG	1 cut(s)	472
BsrDI	GCAATG	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	186, 348
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	6 cut(s)	169, 217, 244, 312, 325, 390
BssNI	GRCGYC	1 cut(s)	424
BstACI	GRCGYC	1 cut(s)	424
BstAFI	CTTAAG	1 cut(s)	472
BstAUI	TGTACA	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	12, 84
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	238, 340, 404
BstKTI	GATC	6 cut(s)	172, 220, 247, 315, 328, 393
BstMBI	GATC	6 cut(s)	169, 217, 244, 312, 325, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 344
BstSCI	CCNGG	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	70, 170
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	169, 325
BstYI	RGATCY	2 cut(s)	169, 325
BsuI	GTATCC	1 cut(s)	461
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	238, 340, 404
BtsIMutI	CAGTG	2 cut(s)	9, 193
BveI	ACCTGC	1 cut(s)	43
CciI	TCATGA	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	109
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	4 cut(s)	37, 152, 229, 248
CviJI	RGCY	5 cut(s)	119, 213, 273, 292, 347
CviKI_1	RGCY	5 cut(s)	119, 213, 273, 292, 347
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	12, 84
DpnI	GATC	6 cut(s)	171, 219, 246, 314, 327, 392
DpnII	GATC	6 cut(s)	169, 217, 244, 312, 325, 390
Eco32I	GATATC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	81
FaeI	CATG	4 cut(s)	40, 155, 232, 251
FatI	CATG	4 cut(s)	36, 151, 228, 247
FbaI	TGATCA	3 cut(s)	217, 244, 390
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	59, 159
FokI	GGATG	3 cut(s)	245, 347, 391
Fsp4HI	GCNGC	2 cut(s)	59, 159
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	2 cut(s)	59, 159
HapII	CCGG	1 cut(s)	357
HgaI	GACGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	4 cut(s)	40, 155, 232, 251
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HpaII	CCGG	1 cut(s)	357
Hpy166II	GTNNAC	2 cut(s)	9, 353
Hpy188I	TCNGA	2 cut(s)	85, 390
Hpy188III	TCNNGA	4 cut(s)	29, 248, 420, 443
Hpy8I	GTNNAC	2 cut(s)	9, 353
HpyCH4V	TGCA	6 cut(s)	4, 58, 74, 158, 260, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 344
HpyF3I	CTNAG	2 cut(s)	12, 84
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	4 cut(s)	40, 155, 232, 251
Ksp22I	TGATCA	3 cut(s)	217, 244, 390
Kzo9I	GATC	6 cut(s)	169, 217, 244, 312, 325, 390
LpnPI	CCDG	7 cut(s)	38, 199, 306, 361, 370, 405, 443
Lsp1109I	GCAGC	2 cut(s)	70, 170
LweI	GCATC	2 cut(s)	145, 325
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	16, 139
MalI	GATC	6 cut(s)	171, 219, 246, 314, 327, 392
MboI	GATC	6 cut(s)	169, 217, 244, 312, 325, 390
MboII	GAAGA	2 cut(s)	44, 209
MflI	RGATCY	2 cut(s)	169, 325
MluCI	AATT	2 cut(s)	202, 377
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	3 cut(s)	7, 187, 263
MseI	TTAA	2 cut(s)	281, 473
MslI	CAYNNNNRTG	1 cut(s)	432
MspCI	CTTAAG	1 cut(s)	472
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	58, 344
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	6 cut(s)	169, 217, 244, 312, 325, 390
NlaIII	CATG	4 cut(s)	40, 155, 232, 251
NmuCI	GTSAC	2 cut(s)	16, 139
PagI	TCATGA	1 cut(s)	247
PaqCI	CACCTGC	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	60, 160
PspPI	GGNCC	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	169, 325
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	281, 473
SatI	GCNGC	2 cut(s)	59, 159
Sau3AI	GATC	6 cut(s)	169, 217, 244, 312, 325, 390
Sau96I	GGNCC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	5 cut(s)	18, 57, 121, 215, 432
SfaNI	GCATC	2 cut(s)	145, 325
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	2 cut(s)	443, 472
SmoI	CTYRAG	2 cut(s)	443, 472
Sse9I	AATT	2 cut(s)	202, 377
SsiI	CCGC	1 cut(s)	112
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	355
TaqI	TCGA	2 cut(s)	315, 352
TasI	AATT	2 cut(s)	202, 377
TatI	WGTACW	1 cut(s)	225
Tru1I	TTAA	2 cut(s)	281, 473
Tru9I	TTAA	2 cut(s)	281, 473
TscAI	CASTG	2 cut(s)	16, 193
TseFI	GTSAC	2 cut(s)	16, 139
TseI	GCWGC	2 cut(s)	58, 158
Tsp45I	GTSAC	2 cut(s)	16, 139
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	2 cut(s)	16, 193
Vha464I	CTTAAG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	352
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.