Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015627

Physical Location & Seq

Genomic Coordinates Forward (+)

3700327 .. 3700974

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCCGGCGGAGTTGCAGTTCCTTCTGTGAGCGACGGCCAGGCTTTATTTAGACACGACCACTACGTCAACTATCGCACCCAGGTAGAGTGGGTTCCTATCCCACAGGGAACTACGAGCCTTCCCATCCATATTTATCTCTTCAAGTCAATCGAAACCGAACCGAGCCAAACCATTACCTTCCTTCACAGCAACTATGATATGCAGTTCACTGAGGTCACTAGGGTTCTTGGAGACATGGGTGTTCCACGGCAGGTGCAGCAAACAATTGTTGCAAAGATATCTGAGTTTCTTGTTCTTGGGAATATGGACCGCACCGCTAATAATGGTTATATTGATGTGACCATAATACACGATGCAACATACATAGATCTAAATATTATTCCCAGTGATGAGGAAGATGATTCATATAGCTTTGATCAAATGTACATGGATGACTATTTTGATCATGATAGGGTTGCAAGGCAAAGAGGTTTTGATTTAATCGTGGAGCCAGATAATGACGATAGCGAGATCGAATGTGGAGATCCTTTGGGTGCAATGTTAGCCAGGTTATATTATGATATTAATCATGTGGATGCGGCGGTTATCGGCATCCATGAGTTGCTTCAAAGGAATCTTCCCACATTCACGTACAGAAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

215

Amino Acids

24.57

Weight (kDa)

4.45

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14420
rosa_chinensis	RchiOBHm_Chr4g0407861 RchiOBHm_Chr7g0182241
rosa_laevigata	RLG00000005137
rosa_multiflora	Rmu_sc0000003.1_g000011 Rmu_sc0026766.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271390
rosa_rugosa	Rorug06G0446400
rosa_samantha	Rh4CG153400 Rh4DG140900 Rh7AG049400 Rh7BG049500 Rh7CG050800 Rh7DG048700
rosa_wichuraiana	Rw4G012060 Rw7G004050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	244
AciI	CCGC	5 cut(s)	9, 313, 318, 581, 584
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	1 cut(s)	37
AfaI	GTAC	2 cut(s)	428, 635
AgsI	TTSAA	2 cut(s)	145, 611
AjnI	CCWGG	3 cut(s)	39, 81, 548
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	1 cut(s)	414
AluI	AGCT	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	259
AseI	ATTAAT	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	2 cut(s)	52, 266
BciT130I	CCWGG	3 cut(s)	41, 83, 550
BclI	TGATCA	2 cut(s)	418, 445
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	244
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	2 cut(s)	260, 582
BlsI	GCNGC	2 cut(s)	261, 583
Bme1390I	CCNGG	3 cut(s)	41, 83, 550
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	96, 492
BmrFI	CCNGG	3 cut(s)	41, 83, 550
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	3 cut(s)	346, 568, 603
BmuI	ACTGGG	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	633
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	81, 248
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	3 cut(s)	41, 83, 550
BseDI	CCNNGG	2 cut(s)	81, 248
BseGI	GGATG	4 cut(s)	126, 439, 583, 594
BseJI	GATNNNNATC	1 cut(s)	567
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	204, 276
BseNI	ACTGG	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	370, 418, 445, 513, 526
BspACI	CCGC	5 cut(s)	9, 313, 318, 581, 584
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	205, 277
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	96, 492
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	546
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	2 cut(s)	81, 248
BssMI	GATC	5 cut(s)	370, 418, 445, 513, 526
Bst2UI	CCWGG	3 cut(s)	41, 83, 550
Bst6I	CTCTTC	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	633
BstDEI	CTNAG	2 cut(s)	213, 285
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	126, 439, 583, 594
BstKTI	GATC	5 cut(s)	373, 421, 448, 516, 529
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	5 cut(s)	370, 418, 445, 513, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 545
BstNI	CCWGG	3 cut(s)	41, 83, 550
BstSCI	CCNGG	3 cut(s)	39, 81, 548
BstV1I	GCAGC	1 cut(s)	271
BstX2I	RGATCY	2 cut(s)	370, 526
BstYI	RGATCY	2 cut(s)	370, 526
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	4 cut(s)	126, 439, 583, 594
BtsIMutI	CAGTG	2 cut(s)	210, 394
BveI	ACCTGC	1 cut(s)	244
CciI	TCATGA	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	427, 634
CviAII	CATG	5 cut(s)	238, 430, 449, 572, 599
CviJI	RGCY	7 cut(s)	39, 44, 120, 168, 414, 493, 548
CviKI_1	RGCY	7 cut(s)	39, 44, 120, 168, 414, 493, 548
CviQI	GTAC	2 cut(s)	427, 634
DdeI	CTNAG	2 cut(s)	213, 285
DpnI	GATC	5 cut(s)	372, 420, 447, 515, 528
DpnII	GATC	5 cut(s)	370, 418, 445, 513, 526
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	310
EcoRII	CCWGG	3 cut(s)	39, 81, 548
EcoRV	GATATC	1 cut(s)	282
FaeI	CATG	5 cut(s)	241, 433, 452, 575, 602
FatI	CATG	5 cut(s)	237, 429, 448, 571, 598
FbaI	TGATCA	2 cut(s)	418, 445
Fnu4HI	GCNGC	2 cut(s)	260, 582
FokI	GGATG	4 cut(s)	113, 446, 581, 590
Fsp4HI	GCNGC	2 cut(s)	260, 582
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	2 cut(s)	260, 582
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	5 cut(s)	241, 433, 452, 575, 602
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	404, 616
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	70, 210
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	2 cut(s)	70, 210
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	4 cut(s)	33, 131, 190, 194
HpyCH4IV	ACGT	2 cut(s)	66, 632
HpyCH4V	TGCA	7 cut(s)	17, 205, 259, 275, 359, 461, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 545
HpyF3I	CTNAG	2 cut(s)	213, 285
HpySE526I	ACGT	2 cut(s)	66, 632
Hsp92II	CATG	5 cut(s)	241, 433, 452, 575, 602
Ksp22I	TGATCA	2 cut(s)	418, 445
Kzo9I	GATC	5 cut(s)	370, 418, 445, 513, 526
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	3 cut(s)	346, 568, 603
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	2 cut(s)	66, 632
MaeIII	GTNAC	2 cut(s)	217, 340
MalI	GATC	5 cut(s)	372, 420, 447, 515, 528
MboI	GATC	5 cut(s)	370, 418, 445, 513, 526
MboII	GAAGA	3 cut(s)	133, 410, 611
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	2 cut(s)	370, 526
MluCI	AATT	1 cut(s)	267
MnlI	CCTC	3 cut(s)	208, 388, 464
MseI	TTAA	2 cut(s)	482, 567
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	3 cut(s)	41, 83, 550
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	3 cut(s)	41, 83, 550
MwoI	GCNNNNNNNGC	2 cut(s)	259, 545
NdeII	GATC	5 cut(s)	370, 418, 445, 513, 526
NlaIII	CATG	5 cut(s)	241, 433, 452, 575, 602
NlaIV	GGNNCC	2 cut(s)	96, 492
NmuCI	GTSAC	2 cut(s)	217, 340
PagI	TCATGA	1 cut(s)	448
PaqCI	CACCTGC	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	404, 616
PkrI	GCNGC	2 cut(s)	261, 583
Ppu21I	YACGTR	1 cut(s)	633
PshBI	ATTAAT	1 cut(s)	567
Psp6I	CCWGG	3 cut(s)	39, 81, 548
PspGI	CCWGG	3 cut(s)	39, 81, 548
PspN4I	GGNNCC	2 cut(s)	96, 492
PspPI	GGNCC	1 cut(s)	310
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
PsuI	RGATCY	2 cut(s)	370, 526
RsaI	GTAC	2 cut(s)	428, 635
RsaNI	GTAC	2 cut(s)	427, 634
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	482, 567
SatI	GCNGC	2 cut(s)	260, 582
Sau3AI	GATC	5 cut(s)	370, 418, 445, 513, 526
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	3 cut(s)	41, 83, 550
SetI	ASST	9 cut(s)	69, 87, 182, 219, 258, 416, 475, 554, 635
SfaNI	GCATC	3 cut(s)	346, 568, 603
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	5 cut(s)	9, 313, 318, 581, 584
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	39, 81, 548
TaiI	ACGT	2 cut(s)	69, 635
TaqI	TCGA	2 cut(s)	153, 516
TasI	AATT	1 cut(s)	267
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	404, 616
Tru1I	TTAA	2 cut(s)	482, 567
Tru9I	TTAA	2 cut(s)	482, 567
TscAI	CASTG	2 cut(s)	217, 394
TseFI	GTSAC	2 cut(s)	217, 340
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	2 cut(s)	217, 340
TspDTI	ATGAA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	217, 394
VpaK11BI	GGWCC	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	567
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.