Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0015627

Physical Location & Seq

Genomic Coordinates Forward (+)

3384939 .. 3385622

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G004050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGATGACTATTTTGATCATGATAGGTTTGCAAGGCAAAGAGGTTTTGATTTAATCGTTGAGCCAGATAATGACGATAGCGAGATTGATTGTGGAGATCCTTTGGATGCAATGTTAGCCAGGTTATATTATGATATTAATCATGTGGATGCGGCGGTTATCGGCATCCATGAGTTGCTTCAAAGGAATCTTCCTACGTTCACAGAAACAAATGATCATATTGAGGATTTTCAGCTGATGAACTATAGGGATATTGAGGCGGCTGATCAGTATCATAATCGGCCACCTCATGAATATCCCTATAATTCGTCCACTGATCATGATACTGAGGATGAAGATTATTTTGTGTTGGACGAATTGCTAATGGAAACAGATGATAATGGTAATGAGGAGATTGATGGGGCTACATTGGAATCCATGGAAACATATATGGCCATGACCATCCCAGTAAGTAAATCAGCTATAGAGGATTTGAAGAAAGTGAGACTCGAGAGTGTGGAAACTGCGAGACATGCTGGGTTATGTAGTATTTGTTTGGAGGACTTTAAAGCCGGAGTTGAAGCTACTCGCTTGCCTTGCTTACATTTTTTTCATGGAGATTGCGTTGTTCGGTGGCTGGAGATCAATCATCAATGCCCCTTGTGCCGATTTCCAATGCCTCATGATGGAACATCAATCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009845 GO:0009987 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

227

Amino Acids

26.24

Weight (kDa)

4.32

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	174 - 216	9.1e-15	Ring finger domain
zf-C3HC4_2	PF13923	175 - 215	1.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	175 - 202	1.7e-09	RING-like zinc finger
zf-C3HC4	PF00097	175 - 215	5.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	175 - 216	4.8e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14420
rosa_chinensis	RchiOBHm_Chr4g0407861 RchiOBHm_Chr7g0182241
rosa_laevigata	RLG00000005137
rosa_multiflora	Rmu_sc0000003.1_g000011 Rmu_sc0026766.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271390
rosa_rugosa	Rorug06G0446400
rosa_samantha	Rh4CG153400 Rh4DG140900 Rh7AG049400 Rh7BG049500 Rh7CG050800 Rh7DG048700
rosa_wichuraiana	Rw4G012060 Rw7G004050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	152, 155, 260
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	2 cut(s)	281, 432
AfiI	CCNNNNNNNGG	1 cut(s)	665
AgsI	TTSAA	3 cut(s)	182, 475, 560
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	3 cut(s)	235, 461, 563
AluI	AGCT	3 cut(s)	235, 461, 563
Alw26I	GTCTC	2 cut(s)	478, 502
AlwI	GGATC	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	281, 432
AseI	ATTAAT	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	434
BccI	CCATC	3 cut(s)	392, 449, 659
BciT130I	CCWGG	1 cut(s)	121
BclI	TGATCA	4 cut(s)	16, 214, 265, 316
BcoDI	GTCTC	2 cut(s)	478, 502
BfmI	CTRYAG	2 cut(s)	244, 462
BisI	GCNGC	2 cut(s)	153, 261
BlsI	GCNGC	2 cut(s)	154, 262
Bme1390I	CCNGG	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	488
BmrFI	CCNGG	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	440
BmsI	GCATC	3 cut(s)	97, 139, 174
BmuI	ACTGGG	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	638
BsaBI	GATNNNNATC	2 cut(s)	138, 270
BsaJI	CCNNGG	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
Bse1I	ACTGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	117
Bse8I	GATNNNNATC	2 cut(s)	138, 270
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	6 cut(s)	10, 112, 154, 165, 337, 441
BseJI	GATNNNNATC	2 cut(s)	138, 270
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	404
BseYI	CCCAGC	1 cut(s)	515
BshFI	GGCC	2 cut(s)	283, 434
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	552
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmAI	GTCTC	2 cut(s)	478, 502
BsnI	GGCC	2 cut(s)	283, 434
BsoBI	CYCGRG	1 cut(s)	488
Bsp143I	GATC	6 cut(s)	16, 97, 214, 265, 316, 621
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	3 cut(s)	152, 155, 260
BspANI	GGCC	2 cut(s)	283, 434
BspCNI	CTCAG	1 cut(s)	319
BspHI	TCATGA	4 cut(s)	19, 289, 319, 661
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	6 cut(s)	16, 97, 214, 265, 316, 621
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	572
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	6 cut(s)	10, 112, 154, 165, 337, 441
BstKTI	GATC	6 cut(s)	19, 100, 217, 268, 319, 624
BstMAI	GTCTC	2 cut(s)	478, 502
BstMBI	GATC	6 cut(s)	16, 97, 214, 265, 316, 621
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 512, 576, 642
BstNI	CCWGG	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	119
BstSFI	CTRYAG	2 cut(s)	244, 462
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	283, 434
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	6 cut(s)	10, 112, 154, 165, 337, 441
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	572
CciI	TCATGA	4 cut(s)	19, 289, 319, 661
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	6 cut(s)	18, 99, 216, 267, 318, 623
DpnII	GATC	6 cut(s)	16, 97, 214, 265, 316, 621
DraI	TTTAAA	1 cut(s)	547
EaeI	YGGCCR	2 cut(s)	281, 432
Eco130I	CCWWGG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FbaI	TGATCA	4 cut(s)	16, 214, 265, 316
Fnu4HI	GCNGC	2 cut(s)	153, 261
FokI	GGATG	6 cut(s)	17, 119, 152, 161, 344, 428
Fsp4HI	GCNGC	2 cut(s)	153, 261
GluI	GCNGC	2 cut(s)	153, 261
GsaI	CCCAGC	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	2 cut(s)	283, 434
HapII	CCGG	1 cut(s)	552
HinfI	GANTC	3 cut(s)	187, 413, 486
HpaII	CCGG	1 cut(s)	552
Hpy166II	GTNNAC	2 cut(s)	201, 312
Hpy188III	TCNNGA	5 cut(s)	20, 290, 320, 490, 662
Hpy8I	GTNNAC	2 cut(s)	201, 312
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	32, 110
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 512, 576, 642
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	197
Ksp22I	TGATCA	4 cut(s)	16, 214, 265, 316
Kzo9I	GATC	6 cut(s)	16, 97, 214, 265, 316, 621
LpnPI	CCDG	7 cut(s)	78, 106, 133, 459, 501, 565, 602
LweI	GCATC	3 cut(s)	97, 139, 174
MaeII	ACGT	1 cut(s)	197
MalI	GATC	6 cut(s)	18, 99, 216, 267, 318, 623
MboI	GATC	6 cut(s)	16, 97, 214, 265, 316, 621
MboII	GAAGA	3 cut(s)	182, 347, 487
MflI	RGATCY	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	2 cut(s)	304, 356
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	9 cut(s)	35, 217, 250, 297, 322, 382, 460, 532, 669
Mox20I	TGGCCA	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	4 cut(s)	53, 138, 546, 682
MslI	CAYNNNNRTG	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	4 cut(s)	116, 512, 576, 642
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	6 cut(s)	16, 97, 214, 265, 316, 621
NspI	RCATGY	1 cut(s)	515
PaeR7I	CTCGAG	1 cut(s)	488
PagI	TCATGA	4 cut(s)	19, 289, 319, 661
PfeI	GAWTC	2 cut(s)	187, 413
PkrI	GCNGC	2 cut(s)	154, 262
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
PshBI	ATTAAT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	4 cut(s)	53, 138, 546, 682
SatI	GCNGC	2 cut(s)	153, 261
Sau3AI	GATC	6 cut(s)	16, 97, 214, 265, 316, 621
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	8 cut(s)	29, 46, 125, 200, 237, 289, 463, 565
SfaNI	GCATC	3 cut(s)	97, 139, 174
SfcI	CTRYAG	2 cut(s)	244, 462
Sfr274I	CTCGAG	1 cut(s)	488
SlaI	CTCGAG	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	2 cut(s)	304, 356
SsiI	CCGC	3 cut(s)	152, 155, 260
StyD4I	CCNGG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	417
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	489
TasI	AATT	2 cut(s)	304, 356
TauI	GCSGC	2 cut(s)	155, 263
TfiI	GAWTC	2 cut(s)	187, 413
Tru1I	TTAA	4 cut(s)	53, 138, 546, 682
Tru9I	TTAA	4 cut(s)	53, 138, 546, 682
TscAI	CASTG	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	254, 306, 348, 581
TspRI	CASTG	1 cut(s)	319
VspI	ATTAAT	1 cut(s)	138
XceI	RCATGY	1 cut(s)	515
XhoI	CTCGAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.