Rroxscaffold_3G00271390

Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015627
Physical Location & Seq
Reverse (-)
63742245 .. 63743746
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271390.1

Sequence Viewer

Length: 813 bp
ATGTCCGGCGGAGTTGCAGTTCCTTCTGTGAGCGACGGCCAGGCTTTAGTTAGACACGACCACTACGTCGACTATCGCACCCAGGTAGAGTGGGTTCCAATCCCACAGGGAACTACGAGCCTTCCCATCCATATTTATCTCTTCAAGTCAAACGAAACCGAACCGAGCCAAACCATTACCTTCCTTCACAGCAACTATGATATGCAGTTCACTGAGGTCACCAGGGTTCTTGGAGACATGTGTGTTCCACGGCAGGTGCAGCAAACTATTGTTGCAAAGATATCTGAGTTTCTTGTTCTTGGGAATATGGACCGCACCGCCAATAATGGTTATATTGATGTGACCATAATACACGATGCAGCATACATAGATCTAAATATTGTTCCCAGTGATGAGGAAGATGATTCATATAGCTTTGATCAAATGTACATGGATGACTATTTTGATCATGATAGGGTTACAAGGCAAAGAGGTTTTGATTTAATCGTTGAGCCAGATAATGACGATAGCGAGATCGAATGTGGAGATCCTTTGGATGCAATGTTAGCCAGGTTATATTATGATATTAATCATGTGGATGCGGCGGTTATCGGCATCCATGAGTTGCTTCAAAGGAATCTTCCTACGTTCACAGAAACAAATGATGATCATCATATTGAGGATTTTCAGCTGATGAACTATAGGGATACTGAGGCGGCTGATCAGTATCATAATCGGCCACCTCATGAACATCCCTATAATTCGTCGTCTATGACTCCTAATGTGATGGTGGAAAAGCGTCTAGGGAAGTCAAGTTCCGGTAACGGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

270

Amino Acids

30.91

Weight (kDa)

4.46

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
AasI GACNNNNNNGTC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 69
AciI CCGC 6 cut(s) 9, 313, 318, 581, 584, 695
AclWI GGATC 1 cut(s) 521
AcoI YGGCCR 2 cut(s) 37, 716
AfaI GTAC 1 cut(s) 428
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 2 cut(s) 145, 611
AjnI CCWGG 4 cut(s) 39, 81, 221, 548
AloI GAACNNNNNNTCC 3 cut(s) 35, 778, 810
AluBI AGCT 2 cut(s) 414, 670
AluI AGCT 2 cut(s) 414, 670
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 521
AoxI GGCC 2 cut(s) 37, 716
ApeKI GCWGC 2 cut(s) 259, 359
AseI ATTAAT 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 271, 371
BccI CCATC 3 cut(s) 134, 760, 801
BceAI ACGGC 2 cut(s) 52, 266
BciT130I CCWGG 4 cut(s) 41, 83, 223, 550
BciVI GTATCC 1 cut(s) 679
BclI TGATCA 4 cut(s) 418, 445, 646, 700
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 782
BfmI CTRYAG 1 cut(s) 679
BfuAI ACCTGC 1 cut(s) 244
BfuI GTATCC 1 cut(s) 679
BglII AGATCT 1 cut(s) 370
BisI GCNGC 4 cut(s) 260, 360, 582, 696
BlsI GCNGC 4 cut(s) 261, 361, 583, 697
Bme1390I CCNGG 4 cut(s) 41, 83, 223, 550
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 4 cut(s) 41, 83, 223, 550
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 4 cut(s) 346, 526, 568, 603
BmuI ACTGGG 1 cut(s) 381
BsaBI GATNNNNATC 3 cut(s) 567, 648, 705
BsaJI CCNNGG 3 cut(s) 81, 222, 248
BsaWI WCCGGW 1 cut(s) 797
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 3 cut(s) 567, 648, 705
BseBI CCWGG 4 cut(s) 41, 83, 223, 550
BseDI CCNNGG 3 cut(s) 81, 222, 248
BseGI GGATG 7 cut(s) 126, 439, 541, 583, 594, 730, 812
BseJI GATNNNNATC 3 cut(s) 567, 648, 705
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 3 cut(s) 204, 276, 681
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 2 cut(s) 271, 371
BsgI GTGCAG 1 cut(s) 278
BshFI GGCC 2 cut(s) 39, 718
BsiSI CCGG 2 cut(s) 6, 798
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 2 cut(s) 39, 718
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 7 cut(s) 370, 418, 445, 513, 526, 646, 700
BspACI CCGC 6 cut(s) 9, 313, 318, 581, 584, 695
BspANI GGCC 2 cut(s) 39, 718
BspCNI CTCAG 3 cut(s) 205, 277, 682
BspHI TCATGA 2 cut(s) 448, 724
BspLI GGNNCC 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 546
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 3 cut(s) 81, 222, 248
BssMI GATC 7 cut(s) 370, 418, 445, 513, 526, 646, 700
Bst2UI CCWGG 4 cut(s) 41, 83, 223, 550
Bst6I CTCTTC 1 cut(s) 146
BstAUI TGTACA 1 cut(s) 426
BstDEI CTNAG 3 cut(s) 213, 285, 690
BstDSI CCRYGG 1 cut(s) 248
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 7 cut(s) 126, 439, 541, 583, 594, 730, 812
BstKTI GATC 7 cut(s) 373, 421, 448, 516, 529, 649, 703
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 7 cut(s) 370, 418, 445, 513, 526, 646, 700
BstMWI GCNNNNNNNGC 2 cut(s) 259, 545
BstNI CCWGG 4 cut(s) 41, 83, 223, 550
BstNSI RCATGY 1 cut(s) 241
BstPI GGTNACC 1 cut(s) 217
BstSCI CCNGG 4 cut(s) 39, 81, 221, 548
BstSFI CTRYAG 1 cut(s) 679
BstV1I GCAGC 2 cut(s) 271, 371
BstX2I RGATCY 2 cut(s) 370, 526
BstYI RGATCY 2 cut(s) 370, 526
BsuI GTATCC 1 cut(s) 679
BsuRI GGCC 2 cut(s) 39, 718
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 7 cut(s) 126, 439, 541, 583, 594, 730, 812
BtsIMutI CAGTG 2 cut(s) 210, 394
BveI ACCTGC 1 cut(s) 244
CciI TCATGA 2 cut(s) 448, 724
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 1 cut(s) 767
Csp6I GTAC 1 cut(s) 427
CviAII CATG 6 cut(s) 238, 430, 449, 572, 599, 725
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 3 cut(s) 213, 285, 690
DpnI GATC 7 cut(s) 372, 420, 447, 515, 528, 648, 702
DpnII GATC 7 cut(s) 370, 418, 445, 513, 526, 646, 700
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
EaeI YGGCCR 2 cut(s) 37, 716
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 24
Eco32I GATATC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 310
Eco91I GGTNACC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 217
EcoRII CCWGG 4 cut(s) 39, 81, 221, 548
EcoRV GATATC 1 cut(s) 282
FaeI CATG 6 cut(s) 241, 433, 452, 575, 602, 728
FatI CATG 6 cut(s) 237, 429, 448, 571, 598, 724
FbaI TGATCA 4 cut(s) 418, 445, 646, 700
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 4 cut(s) 260, 360, 582, 696
FokI GGATG 6 cut(s) 113, 446, 548, 581, 590, 717
Fsp4HI GCNGC 4 cut(s) 260, 360, 582, 696
FspBI CTAG 1 cut(s) 782
GluI GCNGC 4 cut(s) 260, 360, 582, 696
HaeIII GGCC 2 cut(s) 39, 718
HapII CCGG 2 cut(s) 6, 798
HgaI GACGC 1 cut(s) 767
Hin1II CATG 6 cut(s) 241, 433, 452, 575, 602, 728
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 3 cut(s) 404, 616, 754
HpaII CCGG 2 cut(s) 6, 798
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 3 cut(s) 70, 210, 630
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 449, 725
Hpy8I GTNNAC 3 cut(s) 70, 210, 630
Hpy99I CGWCG 3 cut(s) 38, 71, 748
HpyAV CCTTC 4 cut(s) 33, 131, 190, 194
HpyCH4IV ACGT 2 cut(s) 66, 626
HpyCH4V TGCA 6 cut(s) 17, 205, 259, 275, 359, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 545
HpyF3I CTNAG 3 cut(s) 213, 285, 690
HpySE526I ACGT 2 cut(s) 66, 626
Hsp92II CATG 6 cut(s) 241, 433, 452, 575, 602, 728
Ksp22I TGATCA 4 cut(s) 418, 445, 646, 700
Kzo9I GATC 7 cut(s) 370, 418, 445, 513, 526, 646, 700
Lsp1109I GCAGC 2 cut(s) 271, 371
LweI GCATC 4 cut(s) 346, 526, 568, 603
MaeI CTAG 1 cut(s) 782
MaeII ACGT 2 cut(s) 66, 626
MaeIII GTNAC 4 cut(s) 217, 340, 457, 800
MalI GATC 7 cut(s) 372, 420, 447, 515, 528, 648, 702
MboI GATC 7 cut(s) 370, 418, 445, 513, 526, 646, 700
MboII GAAGA 3 cut(s) 133, 410, 611
MflI RGATCY 2 cut(s) 370, 526
MluCI AATT 1 cut(s) 739
MlyI GAGTC 1 cut(s) 748
MnlI CCTC 6 cut(s) 208, 388, 464, 652, 685, 732
MseI TTAA 2 cut(s) 482, 567
MslI CAYNNNNRTG 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 670
MspI CCGG 2 cut(s) 6, 798
MspR9I CCNGG 4 cut(s) 41, 83, 223, 550
MvaI CCWGG 4 cut(s) 41, 83, 223, 550
MwoI GCNNNNNNNGC 2 cut(s) 259, 545
NdeII GATC 7 cut(s) 370, 418, 445, 513, 526, 646, 700
NlaIII CATG 6 cut(s) 241, 433, 452, 575, 602, 728
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 2 cut(s) 217, 340
NspI RCATGY 1 cut(s) 241
PagI TCATGA 2 cut(s) 448, 724
PaqCI CACCTGC 1 cut(s) 244
PciI ACATGT 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 2 cut(s) 404, 616
PkrI GCNGC 4 cut(s) 261, 361, 583, 697
PleI GAGTC 1 cut(s) 748
PpsI GAGTC 1 cut(s) 748
PscI ACATGT 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 567
Psp6I CCWGG 4 cut(s) 39, 81, 221, 548
PspEI GGTNACC 1 cut(s) 217
PspGI CCWGG 4 cut(s) 39, 81, 221, 548
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 310
PsrI GAACNNNNNNTAC 2 cut(s) 78, 110
PsuI RGATCY 2 cut(s) 370, 526
PvuII CAGCTG 1 cut(s) 670
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 576
SalI GTCGAC 1 cut(s) 68
SaqAI TTAA 2 cut(s) 482, 567
SatI GCNGC 4 cut(s) 260, 360, 582, 696
Sau3AI GATC 7 cut(s) 370, 418, 445, 513, 526, 646, 700
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 4 cut(s) 41, 83, 223, 550
SfaNI GCATC 4 cut(s) 346, 526, 568, 603
SfcI CTRYAG 1 cut(s) 679
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 576
Sse9I AATT 1 cut(s) 739
SsiI CCGC 6 cut(s) 9, 313, 318, 581, 584, 695
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 782
StyD4I CCNGG 4 cut(s) 39, 81, 221, 548
TaiI ACGT 2 cut(s) 69, 629
TaqI TCGA 2 cut(s) 69, 516
TasI AATT 1 cut(s) 739
TatI WGTACW 1 cut(s) 426
TauI GCSGC 2 cut(s) 584, 698
TfiI GAWTC 2 cut(s) 404, 616
Tru1I TTAA 2 cut(s) 482, 567
Tru9I TTAA 2 cut(s) 482, 567
TscAI CASTG 2 cut(s) 217, 394
TseFI GTSAC 2 cut(s) 217, 340
TseI GCWGC 2 cut(s) 259, 359
Tsp45I GTSAC 2 cut(s) 217, 340
TspDTI ATGAA 3 cut(s) 396, 689, 741
TspRI CASTG 2 cut(s) 217, 394
VpaK11BI GGWCC 1 cut(s) 310
VspI ATTAAT 1 cut(s) 567
XceI RCATGY 1 cut(s) 241
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.