Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000003.1

Orthogroup ID

OG0015627

Physical Location & Seq

Genomic Coordinates Reverse (-)

66443 .. 67546

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000003.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atgtccggtggagttgcagttccttctgtgagcgacggccaggctttatttagacacaaccactacatcgactatcgcacccaggtagagtgggttccaatcccacagggaactacgagccttcccatccatatttatctcttcaagtcaatcgaaacggaactgagccaaaccattaccttccttcacagcaactatgatatgcagttcattgaggtcactagggttcttggagacatgggtgttccacggcaggtgcagcaaactattgttgcaaagatatctgagtttcttgttcttgggaatatggaccgcaccgctaataatggttatattgatgtgaccataatacacgatgcatcatacatagatctaaatattgttcccagtgatgaggaagatgattcatatagctttgatcaaatgtacatggatgactattttgatcatgataggattgcaaggcaaagaggttttgatttaatcgttgagccagataatgatgatagcgagatcgaatgtggagatcctttggatgcaatgttagccaggttatattatgatattaatcatgtggatgcggcggttatcggcatccatgagttgcttcaaaggaatcttcctacgttcacagaaacaaatgatgatcatcatattaaggattttcagctgatgaactatagggatattgaggcggctgatcagtatcataatcgaccacctcatgaatatccctataattcgtccgctgatcatgatactgaggatgaagatcattttgtgctggacgaattgctaatggaaacatatgataatggtaatgaggagattgatggggctacattggaatccatagaaacatatatggccatgaccatcccagcaagtaaatcagcgatagaggatttgaagaaagtgagattcgagagtgtggaaattgcgagacatgctgggttatgtagtatttgtttggaggactttaaagccggagttgaagctactcgcttgccttgcttacatttttttcatggagattgcgttgttcggtggctggagatcaatcatcaatgccccttgtgccgatttccaatgcctcatgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009845 GO:0009987 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

367

Amino Acids

42.16

Weight (kDa)

4.46

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14420
rosa_chinensis	RchiOBHm_Chr4g0407861 RchiOBHm_Chr7g0182241
rosa_laevigata	RLG00000005137
rosa_multiflora	Rmu_sc0000003.1_g000011 Rmu_sc0026766.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271390
rosa_rugosa	Rorug06G0446400
rosa_samantha	Rh4CG153400 Rh4DG140900 Rh7AG049400 Rh7BG049500 Rh7CG050800 Rh7DG048700
rosa_wichuraiana	Rw4G012060 Rw7G004050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AciI	CCGC	6 cut(s)	313, 318, 581, 584, 695, 747
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	2 cut(s)	37, 867
AfaI	GTAC	1 cut(s)	428
AgsI	TTSAA	4 cut(s)	145, 611, 910, 995
AjnI	CCWGG	3 cut(s)	39, 81, 548
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	3 cut(s)	414, 670, 998
AluI	AGCT	3 cut(s)	414, 670, 998
Alw26I	GTCTC	2 cut(s)	228, 937
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	2 cut(s)	37, 867
ApeKI	GCWGC	1 cut(s)	259
AseI	ATTAAT	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	869
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	3 cut(s)	134, 827, 884
BceAI	ACGGC	2 cut(s)	52, 266
BciT130I	CCWGG	3 cut(s)	41, 83, 550
BclI	TGATCA	5 cut(s)	418, 445, 646, 700, 751
BcoDI	GTCTC	2 cut(s)	228, 937
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	679
BfuAI	ACCTGC	1 cut(s)	244
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	3 cut(s)	260, 582, 696
BlsI	GCNGC	3 cut(s)	261, 583, 697
Bme1390I	CCNGG	3 cut(s)	41, 83, 550
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	3 cut(s)	41, 83, 550
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	5 cut(s)	346, 368, 526, 568, 603
BmuI	ACTGGG	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	1073
BsaBI	GATNNNNATC	4 cut(s)	567, 648, 705, 771
BsaJI	CCNNGG	2 cut(s)	81, 248
BsaWI	WCCGGW	1 cut(s)	5
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 1023, 1053
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	4 cut(s)	567, 648, 705, 771
BseBI	CCWGG	3 cut(s)	41, 83, 550
BseDI	CCNNGG	2 cut(s)	81, 248
BseGI	GGATG	7 cut(s)	126, 439, 541, 583, 594, 772, 876
BseJI	GATNNNNATC	4 cut(s)	567, 648, 705, 771
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	3 cut(s)	155, 276, 753
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	839
BseXI	GCAGC	1 cut(s)	271
BseYI	CCCAGC	2 cut(s)	880, 950
BsgI	GTGCAG	1 cut(s)	278
BshFI	GGCC	2 cut(s)	39, 869
BsiSI	CCGG	2 cut(s)	6, 987
BsmAI	GTCTC	2 cut(s)	228, 937
BsnI	GGCC	2 cut(s)	39, 869
Bsp1407I	TGTACA	1 cut(s)	426
BspACI	CCGC	6 cut(s)	313, 318, 581, 584, 695, 747
BspANI	GGCC	2 cut(s)	39, 869
BspCNI	CTCAG	3 cut(s)	156, 277, 754
BspHI	TCATGA	4 cut(s)	448, 724, 754, 1096
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	546
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	2 cut(s)	81, 248
Bst2UI	CCWGG	3 cut(s)	41, 83, 550
Bst6I	CTCTTC	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	1007
BstDEI	CTNAG	3 cut(s)	164, 285, 762
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	7 cut(s)	126, 439, 541, 583, 594, 772, 876
BstMAI	GTCTC	2 cut(s)	228, 937
BstMWI	GCNNNNNNNGC	5 cut(s)	259, 545, 947, 1011, 1077
BstNI	CCWGG	3 cut(s)	41, 83, 550
BstNSI	RCATGY	1 cut(s)	950
BstSCI	CCNGG	3 cut(s)	39, 81, 548
BstSFI	CTRYAG	1 cut(s)	679
BstV1I	GCAGC	1 cut(s)	271
BstX2I	RGATCY	2 cut(s)	370, 526
BstYI	RGATCY	2 cut(s)	370, 526
BsuRI	GGCC	2 cut(s)	39, 869
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	7 cut(s)	126, 439, 541, 583, 594, 772, 876
BtsIMutI	CAGTG	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	1007
CciI	TCATGA	4 cut(s)	448, 724, 754, 1096
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	427
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	3 cut(s)	164, 285, 762
DraI	TTTAAA	1 cut(s)	982
EaeI	YGGCCR	2 cut(s)	37, 867
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco32I	GATATC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	310
EcoRII	CCWGG	3 cut(s)	39, 81, 548
EcoRV	GATATC	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	361
FauNDI	CATATG	1 cut(s)	808
FbaI	TGATCA	5 cut(s)	418, 445, 646, 700, 751
Fnu4HI	GCNGC	3 cut(s)	260, 582, 696
FokI	GGATG	7 cut(s)	113, 446, 548, 581, 590, 779, 863
Fsp4HI	GCNGC	3 cut(s)	260, 582, 696
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	3 cut(s)	260, 582, 696
GsaI	CCCAGC	2 cut(s)	884, 954
GsuI	CTGGAG	1 cut(s)	1073
HaeIII	GGCC	2 cut(s)	39, 869
HapII	CCGG	2 cut(s)	6, 987
HinfI	GANTC	4 cut(s)	404, 616, 848, 921
HpaII	CCGG	2 cut(s)	6, 987
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	5 cut(s)	449, 725, 755, 925, 1097
Hpy8I	GTNNAC	1 cut(s)	630
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	4 cut(s)	33, 131, 190, 194
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	7 cut(s)	17, 205, 259, 275, 359, 461, 539
HpyF10VI	GCNNNNNNNGC	5 cut(s)	259, 545, 947, 1011, 1077
HpyF3I	CTNAG	3 cut(s)	164, 285, 762
HpySE526I	ACGT	1 cut(s)	626
Ksp22I	TGATCA	5 cut(s)	418, 445, 646, 700, 751
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	5 cut(s)	346, 368, 526, 568, 603
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	2 cut(s)	217, 340
MboII	GAAGA	5 cut(s)	133, 410, 611, 782, 922
MflI	RGATCY	2 cut(s)	370, 526
MlsI	TGGCCA	1 cut(s)	869
MluCI	AATT	3 cut(s)	739, 791, 936
MluNI	TGGCCA	1 cut(s)	869
Mox20I	TGGCCA	1 cut(s)	869
Mph1103I	ATGCAT	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	869
MseI	TTAA	4 cut(s)	482, 567, 657, 981
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	869
MspA1I	CMGCKG	2 cut(s)	670, 749
MspI	CCGG	2 cut(s)	6, 987
MspR9I	CCNGG	3 cut(s)	41, 83, 550
MvaI	CCWGG	3 cut(s)	41, 83, 550
MwoI	GCNNNNNNNGC	5 cut(s)	259, 545, 947, 1011, 1077
NdeI	CATATG	1 cut(s)	808
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	217, 340
NsiI	ATGCAT	1 cut(s)	361
NspI	RCATGY	1 cut(s)	950
PagI	TCATGA	4 cut(s)	448, 724, 754, 1096
PaqCI	CACCTGC	1 cut(s)	244
PfeI	GAWTC	4 cut(s)	404, 616, 848, 921
PkrI	GCNGC	3 cut(s)	261, 583, 697
PshBI	ATTAAT	1 cut(s)	567
Psp6I	CCWGG	3 cut(s)	39, 81, 548
PspFI	CCCAGC	2 cut(s)	880, 950
PspGI	CCWGG	3 cut(s)	39, 81, 548
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	310
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
PsuI	RGATCY	2 cut(s)	370, 526
PvuII	CAGCTG	1 cut(s)	670
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	4 cut(s)	482, 567, 657, 981
SatI	GCNGC	3 cut(s)	260, 582, 696
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	3 cut(s)	41, 83, 550
SfaNI	GCATC	5 cut(s)	346, 368, 526, 568, 603
SfcI	CTRYAG	1 cut(s)	679
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	3 cut(s)	739, 791, 936
SsiI	CCGC	6 cut(s)	313, 318, 581, 584, 695, 747
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	39, 81, 548
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	5 cut(s)	69, 153, 516, 715, 924
TasI	AATT	3 cut(s)	739, 791, 936
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	2 cut(s)	584, 698
TfiI	GAWTC	4 cut(s)	404, 616, 848, 921
Tru1I	TTAA	4 cut(s)	482, 567, 657, 981
Tru9I	TTAA	4 cut(s)	482, 567, 657, 981
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	217, 340
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	2 cut(s)	217, 340
TspDTI	ATGAA	6 cut(s)	199, 396, 689, 741, 783, 1016
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	567
XceI	RCATGY	1 cut(s)	950
XspI	CTAG	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.