Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0015627

Physical Location & Seq

Genomic Coordinates Reverse (-)

33796081 .. 33796893

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG153400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCCGGCAGAGTTGCAGTTCCTTCTGTGAGCGACGGTCAGGCTTTATTTAGACACGACCACTACGTTGACTATCGCACCCAGGTAGAGTGGGTTCCAATTCCACAGGGAACTACGAGCCTTCCCATCCATATTTATCTCTTCAAGTCAATCGAAACCGAACCGAGCCAAATCATTACCTTCCTTCACAGCAACTGTGATATGCAGTTCACTGAGCTCACTAGGGTTCTTGGAGACATGGGTGTTCCACGGCAGGTACAGCAAACTATTGTTGCAAAGATATCTGAGTTTCTTGTTCTTGGGAATATGGACCGCACCGCTAATAATGGTTATATTGTTGTAACCATAATACACGATGCATCATACATAGATCTAAATATTGTTCCCAGTGATGAAGAAGATGATTCATATAGCTTTGATCAAATGTACATGGATGACTATTTTGATCATGATAGGGTTGCAAGGCAAAGAGGTTTTGATTTAATCGTTGAGCCAAATAATGACGATAGCGAGATCGAATGTGGAGATCCTTTGGATGCAATGTTAGCCAGGTTATATTATGATATTAATCATGTGGATGCGGCGGTTATCGGCATCCATGAGTTGCTTCAAAGGAATCTTCCTACGTTCACAGAAACAAATGATGATCATCATATTGAGGATTTTCAGCTGATGAACTATAGGGATATTGAGGCGGCTGATCAGTATCATAATCGGCCACCTCATGAATATCTCTATAATTCGTCCGCTGATCATGATACTGAGGATGATGATTATTTTGTGTTAAAAAAAATTGCTAATGGAAACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

270

Amino Acids

31.17

Weight (kDa)

4.42

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14420
rosa_chinensis	RchiOBHm_Chr4g0407861 RchiOBHm_Chr7g0182241
rosa_laevigata	RLG00000005137
rosa_multiflora	Rmu_sc0000003.1_g000011 Rmu_sc0026766.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271390
rosa_rugosa	Rorug06G0446400
rosa_samantha	Rh4CG153400 Rh4DG140900 Rh7AG049400 Rh7BG049500 Rh7CG050800 Rh7DG048700
rosa_wichuraiana	Rw4G012060 Rw7G004050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AciI	CCGC	6 cut(s)	313, 318, 581, 584, 695, 747
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	1 cut(s)	716
AfaI	GTAC	2 cut(s)	258, 428
AgsI	TTSAA	2 cut(s)	145, 611
AjnI	CCWGG	2 cut(s)	81, 548
AluBI	AGCT	3 cut(s)	217, 414, 670
AluI	AGCT	3 cut(s)	217, 414, 670
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	521
AlwNI	CAGNNNCTG	1 cut(s)	195
AoxI	GGCC	1 cut(s)	716
AseI	ATTAAT	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	219
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	2 cut(s)	83, 550
BclI	TGATCA	5 cut(s)	418, 445, 646, 700, 751
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	679
BfuAI	ACCTGC	1 cut(s)	244
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	2 cut(s)	582, 696
BlsI	GCNGC	2 cut(s)	583, 697
Bme1390I	CCNGG	2 cut(s)	83, 550
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	83, 550
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	5 cut(s)	346, 368, 526, 568, 603
BmuI	ACTGGG	1 cut(s)	381
BsaBI	GATNNNNATC	3 cut(s)	567, 648, 705
BsaJI	CCNNGG	2 cut(s)	81, 248
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	3 cut(s)	567, 648, 705
BseBI	CCWGG	2 cut(s)	83, 550
BseDI	CCNNGG	2 cut(s)	81, 248
BseGI	GGATG	6 cut(s)	126, 439, 541, 583, 594, 772
BseJI	GATNNNNATC	3 cut(s)	567, 648, 705
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	3 cut(s)	204, 276, 753
BseNI	ACTGG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	718
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	718
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	8 cut(s)	370, 418, 445, 513, 526, 646, 700, 751
BspACI	CCGC	6 cut(s)	313, 318, 581, 584, 695, 747
BspANI	GGCC	1 cut(s)	718
BspCNI	CTCAG	3 cut(s)	205, 277, 754
BspHI	TCATGA	3 cut(s)	448, 724, 754
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	546
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	2 cut(s)	81, 248
BssMI	GATC	8 cut(s)	370, 418, 445, 513, 526, 646, 700, 751
Bst2UI	CCWGG	2 cut(s)	83, 550
Bst4CI	ACNGT	2 cut(s)	38, 197
Bst6I	CTCTTC	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	426
BstDEI	CTNAG	3 cut(s)	213, 285, 762
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	6 cut(s)	126, 439, 541, 583, 594, 772
BstKTI	GATC	8 cut(s)	373, 421, 448, 516, 529, 649, 703, 754
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	8 cut(s)	370, 418, 445, 513, 526, 646, 700, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 545
BstNI	CCWGG	2 cut(s)	83, 550
BstSCI	CCNGG	2 cut(s)	81, 548
BstSFI	CTRYAG	1 cut(s)	679
BstX2I	RGATCY	2 cut(s)	370, 526
BstYI	RGATCY	2 cut(s)	370, 526
BsuRI	GGCC	1 cut(s)	718
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	6 cut(s)	126, 439, 541, 583, 594, 772
BtsIMutI	CAGTG	2 cut(s)	210, 394
BveI	ACCTGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	195
CciI	TCATGA	3 cut(s)	448, 724, 754
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	257, 427
CviAII	CATG	7 cut(s)	238, 430, 449, 572, 599, 725, 755
CviQI	GTAC	2 cut(s)	257, 427
DdeI	CTNAG	3 cut(s)	213, 285, 762
DpnI	GATC	8 cut(s)	372, 420, 447, 515, 528, 648, 702, 753
DpnII	GATC	8 cut(s)	370, 418, 445, 513, 526, 646, 700, 751
EaeI	YGGCCR	1 cut(s)	716
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	81, 548
EcoRV	GATATC	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	7 cut(s)	241, 433, 452, 575, 602, 728, 758
FatI	CATG	7 cut(s)	237, 429, 448, 571, 598, 724, 754
FbaI	TGATCA	5 cut(s)	418, 445, 646, 700, 751
Fnu4HI	GCNGC	2 cut(s)	582, 696
FokI	GGATG	6 cut(s)	113, 446, 548, 581, 590, 779
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	582, 696
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	2 cut(s)	582, 696
HaeIII	GGCC	1 cut(s)	718
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	7 cut(s)	241, 433, 452, 575, 602, 728, 758
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	404, 616
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	3 cut(s)	70, 210, 630
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	3 cut(s)	449, 725, 755
Hpy8I	GTNNAC	3 cut(s)	70, 210, 630
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	4 cut(s)	33, 131, 190, 194
HpyCH4III	ACNGT	2 cut(s)	38, 197
HpyCH4IV	ACGT	2 cut(s)	66, 626
HpyCH4V	TGCA	6 cut(s)	17, 205, 275, 359, 461, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 545
HpyF3I	CTNAG	3 cut(s)	213, 285, 762
HpySE526I	ACGT	2 cut(s)	66, 626
Hsp92II	CATG	7 cut(s)	241, 433, 452, 575, 602, 728, 758
Ksp22I	TGATCA	5 cut(s)	418, 445, 646, 700, 751
Kzo9I	GATC	8 cut(s)	370, 418, 445, 513, 526, 646, 700, 751
LpnPI	CCDG	9 cut(s)	19, 26, 68, 92, 95, 239, 400, 535, 562
LweI	GCATC	5 cut(s)	346, 368, 526, 568, 603
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	2 cut(s)	66, 626
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	8 cut(s)	372, 420, 447, 515, 528, 648, 702, 753
MboI	GATC	8 cut(s)	370, 418, 445, 513, 526, 646, 700, 751
MboII	GAAGA	4 cut(s)	133, 407, 410, 611
MflI	RGATCY	2 cut(s)	370, 526
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	99, 739, 792
MnlI	CCTC	5 cut(s)	464, 652, 685, 732, 757
Mph1103I	ATGCAT	1 cut(s)	361
MseI	TTAA	3 cut(s)	482, 567, 785
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	2 cut(s)	670, 749
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	83, 550
MvaI	CCWGG	2 cut(s)	83, 550
MwoI	GCNNNNNNNGC	2 cut(s)	259, 545
NdeII	GATC	8 cut(s)	370, 418, 445, 513, 526, 646, 700, 751
NlaIII	CATG	7 cut(s)	241, 433, 452, 575, 602, 728, 758
NlaIV	GGNNCC	1 cut(s)	96
NsiI	ATGCAT	1 cut(s)	361
PagI	TCATGA	3 cut(s)	448, 724, 754
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	404, 616
PkrI	GCNGC	2 cut(s)	583, 697
PshBI	ATTAAT	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	81, 548
PspGI	CCWGG	2 cut(s)	81, 548
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	310
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
PstNI	CAGNNNCTG	1 cut(s)	195
PsuI	RGATCY	2 cut(s)	370, 526
PvuII	CAGCTG	1 cut(s)	670
RsaI	GTAC	2 cut(s)	258, 428
RsaNI	GTAC	2 cut(s)	257, 427
RseI	CAYNNNNRTG	1 cut(s)	576
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	482, 567, 785
SatI	GCNGC	2 cut(s)	582, 696
Sau3AI	GATC	8 cut(s)	370, 418, 445, 513, 526, 646, 700, 751
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	2 cut(s)	83, 550
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	5 cut(s)	346, 368, 526, 568, 603
SfcI	CTRYAG	1 cut(s)	679
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	3 cut(s)	99, 739, 792
SsiI	CCGC	6 cut(s)	313, 318, 581, 584, 695, 747
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	81, 548
TaaI	ACNGT	2 cut(s)	38, 197
TaiI	ACGT	2 cut(s)	69, 629
TaqI	TCGA	2 cut(s)	153, 516
TasI	AATT	3 cut(s)	99, 739, 792
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	2 cut(s)	584, 698
TfiI	GAWTC	2 cut(s)	404, 616
Tru1I	TTAA	3 cut(s)	482, 567, 785
Tru9I	TTAA	3 cut(s)	482, 567, 785
TscAI	CASTG	2 cut(s)	217, 394
TspDTI	ATGAA	4 cut(s)	396, 408, 689, 741
TspRI	CASTG	2 cut(s)	217, 394
VpaK11BI	GGWCC	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	567
XspI	CTAG	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.