Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015627

Physical Location & Seq

Genomic Coordinates Reverse (-)

65312648 .. 65314089

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTCCGGCGGAGTTGCAGTTCCTTCTGTGAGCGACGGCCAGGCTTTATTTAGACACGACCACTACGTCGACTATTGCACCCAGTTCACTGAGGTCACTAGGGTTCTTGGAGACATGGGTGTTCCACTGCAGGTGCAGCAAACTATTGTTGCAAAGATATCTGAGTTTCTTGTTCTTGGGAATATGGACCGCACCGCTAATAATGGTTATATTGATGTGACCATAATACACGATGCAGCATGCATAGATCTAAATATTGTTCCCAGTGATGAGGAAGATGATTCATATAGCTTTGATCAAATGTACATGGATGACTATTTTGATCATGATAGGGTTACAAGGCAAAGAGGTTTTGATTTAATCGTTGAGCCAGATAATGACGATAGCGAGATCGAATGTGGAGATCCTTTCGATGCAATGTTAGCCAGGTTATATTATGATATTAATCATGTGGATGCGGCGGTTATCGGCATCCATGAGTTGCTTCAAAGGAATCTTCCTACGTTCACAGAAACAAATGATGATCATCATATTGAGGATTTTCAGCTGATGAACTATAGGGATATTGAGGCGGCTGATCAGTATCATAATCAGCCTCCTCAATATCCCTATACTTCATCCGCTGATCATGATACTGAGGATGAAGATTATTTTGTGCTGGACGAATTGCTAATGGAAACAGATGATAATGGCGCGCAGGTCGTCTATGACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

239

Amino Acids

27.2

Weight (kDa)

4.05

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14420
rosa_chinensis	RchiOBHm_Chr4g0407861 RchiOBHm_Chr7g0182241
rosa_laevigata	RLG00000005137
rosa_multiflora	Rmu_sc0000003.1_g000011 Rmu_sc0026766.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271390
rosa_rugosa	Rorug06G0446400
rosa_samantha	Rh4CG153400 Rh4DG140900 Rh7AG049400 Rh7BG049500 Rh7CG050800 Rh7DG048700
rosa_wichuraiana	Rw4G012060 Rw7G004050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	121
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc36I	ACCTGC	2 cut(s)	121, 688
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	695
AciI	CCGC	7 cut(s)	9, 190, 195, 458, 461, 572, 621
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	37
AfaI	GTAC	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	488
AjnI	CCWGG	2 cut(s)	39, 425
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	2 cut(s)	291, 547
AluI	AGCT	2 cut(s)	291, 547
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	136, 236
AseI	ATTAAT	1 cut(s)	444
AspLEI	GCGC	2 cut(s)	695, 697
AspS9I	GGNCC	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	148, 248
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	2 cut(s)	41, 427
BclI	TGATCA	5 cut(s)	295, 322, 523, 577, 625
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	2 cut(s)	128, 556
BfuAI	ACCTGC	2 cut(s)	121, 688
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	4 cut(s)	137, 237, 459, 573
BlsI	GCNGC	4 cut(s)	138, 238, 460, 574
Bme1390I	CCNGG	2 cut(s)	41, 427
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	41, 427
BmrI	ACTGGG	2 cut(s)	76, 258
BmsI	GCATC	4 cut(s)	223, 403, 445, 480
BmuI	ACTGGG	2 cut(s)	76, 258
BsaBI	GATNNNNATC	3 cut(s)	444, 525, 582
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bse1I	ACTGG	2 cut(s)	82, 264
Bse3DI	GCAATG	1 cut(s)	423
Bse8I	GATNNNNATC	3 cut(s)	444, 525, 582
BseBI	CCWGG	2 cut(s)	41, 427
BseGI	GGATG	5 cut(s)	316, 460, 471, 617, 646
BseJI	GATNNNNATC	3 cut(s)	444, 525, 582
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	3 cut(s)	81, 153, 627
BseNI	ACTGG	2 cut(s)	82, 264
BsePI	GCGCGC	1 cut(s)	693
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	2 cut(s)	148, 248
BsgI	GTGCAG	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	695
BshFI	GGCC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	8 cut(s)	247, 295, 322, 390, 403, 523, 577, 625
BspACI	CCGC	7 cut(s)	9, 190, 195, 458, 461, 572, 621
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	3 cut(s)	82, 154, 628
BspFNI	CGCG	1 cut(s)	695
BspHI	TCATGA	2 cut(s)	325, 628
BspMAI	CTGCAG	1 cut(s)	132
BspMI	ACCTGC	2 cut(s)	121, 688
BspPI	GGATC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	423
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	82, 264
BssHII	GCGCGC	1 cut(s)	693
BssMI	GATC	8 cut(s)	247, 295, 322, 390, 403, 523, 577, 625
Bst2UI	CCWGG	2 cut(s)	41, 427
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	241, 695
BstDEI	CTNAG	3 cut(s)	90, 162, 636
BstF5I	GGATG	5 cut(s)	316, 460, 471, 617, 646
BstFNI	CGCG	1 cut(s)	695
BstHHI	GCGC	2 cut(s)	695, 697
BstKTI	GATC	8 cut(s)	250, 298, 325, 393, 406, 526, 580, 628
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	8 cut(s)	247, 295, 322, 390, 403, 523, 577, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 422
BstNI	CCWGG	2 cut(s)	41, 427
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	2 cut(s)	39, 425
BstSFI	CTRYAG	2 cut(s)	128, 556
BstUI	CGCG	1 cut(s)	695
BstV1I	GCAGC	2 cut(s)	148, 248
BstX2I	RGATCY	2 cut(s)	247, 403
BstYI	RGATCY	2 cut(s)	247, 403
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	5 cut(s)	316, 460, 471, 617, 646
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	3 cut(s)	87, 125, 271
BveI	ACCTGC	2 cut(s)	121, 688
Cac8I	GCNNGC	2 cut(s)	241, 695
CciI	TCATGA	2 cut(s)	325, 628
CfoI	GCGC	2 cut(s)	695, 697
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	7 cut(s)	115, 240, 307, 326, 449, 476, 629
CviJI	RGCY	8 cut(s)	39, 44, 291, 370, 425, 547, 575, 595
CviKI_1	RGCY	8 cut(s)	39, 44, 291, 370, 425, 547, 575, 595
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	3 cut(s)	90, 162, 636
DpnI	GATC	8 cut(s)	249, 297, 324, 392, 405, 525, 579, 627
DpnII	GATC	8 cut(s)	247, 295, 322, 390, 403, 523, 577, 625
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	39, 425
EcoRV	GATATC	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	245
FaeI	CATG	7 cut(s)	118, 243, 310, 329, 452, 479, 632
FatI	CATG	7 cut(s)	114, 239, 306, 325, 448, 475, 628
FbaI	TGATCA	5 cut(s)	295, 322, 523, 577, 625
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	4 cut(s)	137, 237, 459, 573
FokI	GGATG	5 cut(s)	323, 458, 467, 604, 653
Fsp4HI	GCNGC	4 cut(s)	137, 237, 459, 573
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	2 cut(s)	694, 696
GluI	GCNGC	4 cut(s)	137, 237, 459, 573
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	2 cut(s)	695, 697
Hin1II	CATG	7 cut(s)	118, 243, 310, 329, 452, 479, 632
Hin6I	GCGC	2 cut(s)	693, 695
HinP1I	GCGC	2 cut(s)	693, 695
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	3 cut(s)	281, 493, 710
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	3 cut(s)	70, 87, 507
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	326, 629
Hpy8I	GTNNAC	3 cut(s)	70, 87, 507
Hpy99I	CGWCG	2 cut(s)	38, 71
HpyAV	CCTTC	1 cut(s)	33
HpyCH4IV	ACGT	2 cut(s)	66, 503
HpyCH4V	TGCA	8 cut(s)	17, 78, 130, 136, 152, 236, 243, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 422
HpyF3I	CTNAG	3 cut(s)	90, 162, 636
HpySE526I	ACGT	2 cut(s)	66, 503
Hsp92II	CATG	7 cut(s)	118, 243, 310, 329, 452, 479, 632
HspAI	GCGC	2 cut(s)	693, 695
Ksp22I	TGATCA	5 cut(s)	295, 322, 523, 577, 625
Kzo9I	GATC	8 cut(s)	247, 295, 322, 390, 403, 523, 577, 625
Lsp1109I	GCAGC	2 cut(s)	148, 248
LweI	GCATC	4 cut(s)	223, 403, 445, 480
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	2 cut(s)	66, 503
MaeIII	GTNAC	3 cut(s)	94, 217, 334
MalI	GATC	8 cut(s)	249, 297, 324, 392, 405, 525, 579, 627
MboI	GATC	8 cut(s)	247, 295, 322, 390, 403, 523, 577, 625
MboII	GAAGA	3 cut(s)	287, 488, 656
MflI	RGATCY	2 cut(s)	247, 403
MluCI	AATT	1 cut(s)	665
MlyI	GAGTC	1 cut(s)	704
MnlI	CCTC	8 cut(s)	85, 265, 341, 529, 562, 606, 609, 631
Mph1103I	ATGCAT	1 cut(s)	245
MseI	TTAA	2 cut(s)	359, 444
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	2 cut(s)	547, 623
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	41, 427
MvaI	CCWGG	2 cut(s)	41, 427
MvnI	CGCG	1 cut(s)	695
MwoI	GCNNNNNNNGC	2 cut(s)	136, 422
NdeII	GATC	8 cut(s)	247, 295, 322, 390, 403, 523, 577, 625
NlaIII	CATG	7 cut(s)	118, 243, 310, 329, 452, 479, 632
NmuCI	GTSAC	2 cut(s)	94, 217
NsiI	ATGCAT	1 cut(s)	245
NspI	RCATGY	1 cut(s)	243
PaeI	GCATGC	1 cut(s)	243
PagI	TCATGA	2 cut(s)	325, 628
PaqCI	CACCTGC	1 cut(s)	121
PauI	GCGCGC	1 cut(s)	693
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	281, 493
PkrI	GCNGC	4 cut(s)	138, 238, 460, 574
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
PshBI	ATTAAT	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	39, 425
PspGI	CCWGG	2 cut(s)	39, 425
PspPI	GGNCC	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	247, 403
PteI	GCGCGC	1 cut(s)	693
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	453
SalI	GTCGAC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	359, 444
SatI	GCNGC	4 cut(s)	137, 237, 459, 573
Sau3AI	GATC	8 cut(s)	247, 295, 322, 390, 403, 523, 577, 625
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	704
ScrFI	CCNGG	2 cut(s)	41, 427
SetI	ASST	9 cut(s)	69, 96, 135, 293, 352, 431, 506, 549, 702
SfaNI	GCATC	4 cut(s)	223, 403, 445, 480
SfcI	CTRYAG	2 cut(s)	128, 556
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	453
SphI	GCATGC	1 cut(s)	243
Sse9I	AATT	1 cut(s)	665
SsiI	CCGC	7 cut(s)	9, 190, 195, 458, 461, 572, 621
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	39, 425
TaiI	ACGT	2 cut(s)	69, 506
TaqI	TCGA	3 cut(s)	69, 393, 411
TasI	AATT	1 cut(s)	665
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	2 cut(s)	461, 575
TfiI	GAWTC	2 cut(s)	281, 493
Tru1I	TTAA	2 cut(s)	359, 444
Tru9I	TTAA	2 cut(s)	359, 444
TscAI	CASTG	3 cut(s)	94, 132, 271
TseFI	GTSAC	2 cut(s)	94, 217
TseI	GCWGC	2 cut(s)	136, 236
Tsp45I	GTSAC	2 cut(s)	94, 217
TspDTI	ATGAA	4 cut(s)	273, 566, 606, 657
TspRI	CASTG	3 cut(s)	94, 132, 271
VpaK11BI	GGWCC	1 cut(s)	187
VspI	ATTAAT	1 cut(s)	444
XceI	RCATGY	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	69
XspI	CTAG	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.