Cleavage and polyadenylation specificity factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G23880 |
| fragaria_vesca | FvH4_5g14450 FvH4_7g29660 FvH4_7g29660 |
| malus_domestica | MD01G1203600.v1.1 MD07G1272900.v1.1 |
| prunus_persica | Prupe.2G296200_v2.0.a1 Prupe.2G296200_v2.0.a1 |
| pyrus_communis | pycom01g21270 pycom01g21280 pycom07g24930 |
| rosa_chinensis | RchiOBHm_Chr1g0377671 RchiOBHm_Chr1g0377681 RchiOBHm_Chr1g0379161 RchiOBHm_Chr1g0379331 |
| rosa_laevigata | RLG00000026506 RLG00000026773 |
| rosa_multiflora | Rmu_sc0002832.1_g000015 |
| rosa_roxburghii | Rroxscaffold_4G00281130 |
| rosa_rugosa | Rorug01G0404200 Rorug01G0404300 |
| rosa_samantha | Rh1AG428300 Rh1BG381000 Rh1CG000300 Rh1CG395000 Rh1DG412000 |
| rosa_wichuraiana | Rw1G037040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 285 |
| AatII | GACGTC | 1 cut(s) | 269 |
| AcsI | RAATTY | 1 cut(s) | 68 |
| AcuI | CTGAAG | 1 cut(s) | 215 |
| AcyI | GRCGYC | 1 cut(s) | 266 |
| AfaI | GTAC | 1 cut(s) | 291 |
| AgsI | TTSAA | 3 cut(s) | 73, 131, 211 |
| AluBI | AGCT | 1 cut(s) | 52 |
| AluI | AGCT | 1 cut(s) | 52 |
| Alw21I | GWGCWC | 1 cut(s) | 59 |
| ApoI | RAATTY | 1 cut(s) | 68 |
| AsuHPI | GGTGA | 1 cut(s) | 98 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 281, 314 |
| Bbv12I | GWGCWC | 1 cut(s) | 59 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BfaI | CTAG | 1 cut(s) | 245 |
| BglII | AGATCT | 1 cut(s) | 90 |
| BlpI | GCTNAGC | 1 cut(s) | 53 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 53 |
| BsaHI | GRCGYC | 1 cut(s) | 266 |
| BseMII | CTCAG | 1 cut(s) | 44 |
| BseRI | GAGGAG | 2 cut(s) | 40, 228 |
| BsiHKAI | GWGCWC | 1 cut(s) | 59 |
| BslFI | GGGAC | 1 cut(s) | 169 |
| BsmFI | GGGAC | 1 cut(s) | 169 |
| Bsp1286I | GDGCHC | 1 cut(s) | 59 |
| Bsp143I | GATC | 1 cut(s) | 90 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 53 |
| BspCNI | CTCAG | 1 cut(s) | 45 |
| BssMI | GATC | 1 cut(s) | 90 |
| BssNI | GRCGYC | 1 cut(s) | 266 |
| Bst4CI | ACNGT | 1 cut(s) | 297 |
| BstACI | GRCGYC | 1 cut(s) | 266 |
| BstDEI | CTNAG | 1 cut(s) | 53 |
| BstKTI | GATC | 1 cut(s) | 93 |
| BstMBI | GATC | 1 cut(s) | 90 |
| BstNSI | RCATGY | 1 cut(s) | 218 |
| BstX2I | RGATCY | 1 cut(s) | 90 |
| BstYI | RGATCY | 1 cut(s) | 90 |
| BtsI | GCAGTG | 1 cut(s) | 202 |
| BtsIMutI | CAGTG | 2 cut(s) | 183, 202 |
| Csp6I | GTAC | 1 cut(s) | 290 |
| CviAII | CATG | 4 cut(s) | 174, 215, 227, 310 |
| CviJI | RGCY | 5 cut(s) | 6, 52, 82, 182, 307 |
| CviKI_1 | RGCY | 5 cut(s) | 6, 52, 82, 182, 307 |
| CviQI | GTAC | 1 cut(s) | 290 |
| DdeI | CTNAG | 1 cut(s) | 53 |
| DpnI | GATC | 1 cut(s) | 92 |
| DpnII | GATC | 1 cut(s) | 90 |
| Eco57I | CTGAAG | 1 cut(s) | 215 |
| FaeI | CATG | 4 cut(s) | 177, 218, 230, 313 |
| FaqI | GGGAC | 1 cut(s) | 169 |
| FatI | CATG | 4 cut(s) | 173, 214, 226, 309 |
| FspBI | CTAG | 1 cut(s) | 245 |
| Hin1I | GRCGYC | 1 cut(s) | 266 |
| Hin1II | CATG | 4 cut(s) | 177, 218, 230, 313 |
| HinfI | GANTC | 1 cut(s) | 157 |
| HphI | GGTGA | 1 cut(s) | 98 |
| Hpy188I | TCNGA | 3 cut(s) | 195, 271, 301 |
| Hpy188III | TCNNGA | 1 cut(s) | 131 |
| HpyAV | CCTTC | 1 cut(s) | 233 |
| HpyCH4III | ACNGT | 1 cut(s) | 297 |
| HpyCH4IV | ACGT | 2 cut(s) | 146, 266 |
| HpyCH4V | TGCA | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 1 cut(s) | 53 |
| HpySE526I | ACGT | 2 cut(s) | 146, 266 |
| Hsp92I | GRCGYC | 1 cut(s) | 266 |
| Hsp92II | CATG | 4 cut(s) | 177, 218, 230, 313 |
| Kzo9I | GATC | 1 cut(s) | 90 |
| LmnI | GCTCC | 1 cut(s) | 241 |
| LpnPI | CCDG | 4 cut(s) | 110, 114, 138, 146 |
| MaeI | CTAG | 1 cut(s) | 245 |
| MaeII | ACGT | 2 cut(s) | 146, 266 |
| MaeIII | GTNAC | 2 cut(s) | 262, 314 |
| MalI | GATC | 1 cut(s) | 92 |
| MboI | GATC | 1 cut(s) | 90 |
| MboII | GAAGA | 1 cut(s) | 260 |
| MfeI | CAATTG | 1 cut(s) | 255 |
| MflI | RGATCY | 1 cut(s) | 90 |
| MhlI | GDGCHC | 1 cut(s) | 59 |
| MluCI | AATT | 2 cut(s) | 68, 255 |
| MlyI | GAGTC | 1 cut(s) | 151 |
| MmeI | TCCRAC | 1 cut(s) | 315 |
| MnlI | CCTC | 3 cut(s) | 18, 70, 249 |
| MseI | TTAA | 1 cut(s) | 327 |
| MslI | CAYNNNNRTG | 1 cut(s) | 231 |
| MunI | CAATTG | 1 cut(s) | 255 |
| NdeII | GATC | 1 cut(s) | 90 |
| NlaIII | CATG | 4 cut(s) | 177, 218, 230, 313 |
| NmuCI | GTSAC | 2 cut(s) | 262, 314 |
| NspI | RCATGY | 1 cut(s) | 218 |
| PleI | GAGTC | 1 cut(s) | 151 |
| PpsI | GAGTC | 1 cut(s) | 151 |
| PsiI | TTATAA | 1 cut(s) | 285 |
| PsuI | RGATCY | 1 cut(s) | 90 |
| RsaI | GTAC | 1 cut(s) | 291 |
| RsaNI | GTAC | 1 cut(s) | 290 |
| RseI | CAYNNNNRTG | 1 cut(s) | 231 |
| SaqAI | TTAA | 1 cut(s) | 327 |
| Sau3AI | GATC | 1 cut(s) | 90 |
| SchI | GAGTC | 1 cut(s) | 151 |
| SduI | GDGCHC | 1 cut(s) | 59 |
| SetI | ASST | 6 cut(s) | 54, 62, 129, 149, 269, 291 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 231 |
| Sse9I | AATT | 2 cut(s) | 68, 255 |
| SspMI | CTAG | 1 cut(s) | 245 |
| TaaI | ACNGT | 1 cut(s) | 297 |
| TaiI | ACGT | 2 cut(s) | 149, 269 |
| TasI | AATT | 2 cut(s) | 68, 255 |
| Tru1I | TTAA | 1 cut(s) | 327 |
| Tru9I | TTAA | 1 cut(s) | 327 |
| TscAI | CASTG | 2 cut(s) | 190, 209 |
| TseFI | GTSAC | 2 cut(s) | 262, 314 |
| Tsp45I | GTSAC | 2 cut(s) | 262, 314 |
| TspDTI | ATGAA | 3 cut(s) | 50, 162, 215 |
| TspRI | CASTG | 2 cut(s) | 190, 209 |
| XapI | RAATTY | 1 cut(s) | 68 |
| XceI | RCATGY | 1 cut(s) | 218 |
| XspI | CTAG | 1 cut(s) | 245 |
| ZraI | GACGTC | 1 cut(s) | 267 |