Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006213

Physical Location & Seq

Genomic Coordinates Forward (+)

51012584 .. 51018616

Gene Structure 6033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG381000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2220 bp

ATGGGAACTTCGGTTCAGGTAACGCCGCTGTGCGGAGTCTACAACGAGAATCCACTCTCCTATTTGGTCTCCATCGACGGCTTCAACTTCCTCATCGACTGTGGCTGGAACGACCACTTCGACCCCTCCCTCCTCCAACCTCTCTCCAGAGTCGCTTCCACCGTAGACGCCGTCCTACTGTCCCACCCCGACACACTCCACCTCGGCGCGCTTCCCTACGCCGCGAAACACCTCGGCCTCGCCGCTCCGGTCTTCTCCACCGAGCCGGTTTACCGGCTAGGGCTTCTCACTATGTACGATCAGTACCTCTCCCGCAAGCAAGTTTCGGAGTTCGATTTGTTTACGCTGGATGATATTGATTCTGCTTTCCAAAATGTCACCAGGCTGACCAATGCTCAGCATCATCATCTTACTGGCAAAGGAGAGGGAATTGTGATCTCGCCTCATGTGGCTGGGCATCTATTGGGAGGTACTGTGTGGAAGATAACAAAGGATGGAGAGGATGTTATATATGCTGTGGACTTCAACCATCGAAAAGAAAAGCATTTGAATGGAATTAATCAGTCATCGTTTGTGCGGCCTGCTGTTCTAATAACAGATGCCTATAATGCTTTGAACAATCAGCCTTATAGACGCCAGAAGGACCGAGAATTTACAGAGACTATAAAGAAGACTCTACGATCTCAAGGAAATGTTTTACTACCTGTTGATACTGCTGGGCGAGTTTTGGAACTTCTTCAAATATTGGAATCGTGTTGGAACGAGGAAAGTTTGCCCTTCCCCATTTATTTCCTAACGTATGTTGCTTCTAGCACAATTGATTATGTCAAAAGTTTCCTTGAGTGGATGAGTGATGCAATGGCAAAGTCCTTTGAGACAACACGAGACAATGCTTTTATTTTGAAGCGTGTGAAACTTCTTGTTAACAAGAGCGAACTTGAAAATGCTCCGGAAGGCCCAAAGGTTGTTTTAGCATCCATGGCCAGTTTGGAAGCGGGTTTTTCTCACGATATATTTGTCGAATGGGCAACTGATGCTAAGAATCTTGTGCTTTTTACAGAACGAGCTCAGTTTGGCACGTTAGCTCGTATGCTTCAGGCAGACCCGCCTCCAAAAGCTGTCAAGGTTACCATGTCCAAGAGGATCCCTTTGGTTGGAGAAGAGCTAATCGCTTATGAAGAAGAGCAGAACAGAATTAAAAAGGAAGAAGCTCTAAAGGCTAGTCTGATTAAAGAGGAGGAGTTAAAAGCTTCTCATGGGGCTGATGTCAGCATGAGTGATCCACTGGTTATTGATACTAGCAATGCAAAGTCTTTGCCAGATGTGGTTCCACGTGGTGGTGGATGCAGAGACATTTTAATCGATGGATTTACTCCTCCTTCTACTAGTGTTGCCCCTATGTTTCCCTTCTATGAAAATAATTCTGAGTGGGATGACTTTGGTGAAGTTATAAATCCGGACGATTATGTTATCAAGGATGAAGACATGAACCAAGGAGCAATGCTTGTTGGAGGTGATATGGATGGAAAAATTGACGAAGCCTCTGCTAGTTTAATACTCGACTCAAGGCCTTCGAAAGTTGTGTCAAGTGAATTGACTGTACCAGTGAAGTGTTCACTGATATATATGGACTTTGAGGGTCGTTCTGATGCGAGATCTGTTAAATCGATTCTTTCGCATATGGCTCCTCTAAAGCTTGTTTTGGTTCATGGAACAGCTGAGGCCACTGAACATTTGAAGCAACACTGCTTGAAACATGTTTGCCCTCATGTATATGCTCCTCAACTTGAAGAAACAATTGATGTCACATCTGATTTATGTGCTTATAAGGTACAACTGTCCGAGAAGCTCATGAGTAACATAATCTTTAAGAAGCTTGGAGAGAATGAAATAGCTTGGTTCGATTCTGATGTAGGGAAGACTGAAGACGAAATGCTGACTTTACTACCCTGCTCAACCCCAGCTCCACCACACAAACCAATCCTAGTTGGTGACTTAAAAATGGCCGATTTCAAGCAATTTCTTGCTGATAACGGTGTCCAGGTTGAATTTGCCAGTGGGGCTTTGCGATGTGGTGAATATGTGACAATACGCAAGGTTGGGGATGCAAGCCATAAGGGTGGCGGTGCTGGTTCGCAGCAAATTGTGATTGAAGGTCCTGCATGTGAGGATTATTACAAAATACGAGAATATCTCTATTCGCACTTTTATCTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

739

Amino Acids

81.97

Weight (kDa)

5.13

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	19 - 149	1.8e-07	Metallo-beta-lactamase superfamily
Lactamase_B_6	PF16661	22 - 195	2e-53	Metallo-beta-lactamase superfamily domain
Beta-Casp	PF10996	242 - 365	4e-23	Beta-Casp domain
RMMBL	PF07521	534 - 584	3e-10	Zn-dependent metallo-hydrolase RNA specificity domain
CPSF100_C	PF13299	644 - 736	7.6e-19	Cleavage and polyadenylation factor 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23880
fragaria_vesca	FvH4_5g14450 FvH4_7g29660 FvH4_7g29660
malus_domestica	MD01G1203600.v1.1 MD07G1272900.v1.1
prunus_persica	Prupe.2G296200_v2.0.a1 Prupe.2G296200_v2.0.a1
pyrus_communis	pycom01g21270 pycom01g21280 pycom07g24930
rosa_chinensis	RchiOBHm_Chr1g0377671 RchiOBHm_Chr1g0377681 RchiOBHm_Chr1g0379161 RchiOBHm_Chr1g0379331
rosa_laevigata	RLG00000026506 RLG00000026773
rosa_multiflora	Rmu_sc0002832.1_g000015
rosa_roxburghii	Rroxscaffold_4G00281130
rosa_rugosa	Rorug01G0404200 Rorug01G0404300
rosa_samantha	Rh1AG428300 Rh1BG381000 Rh1CG000300 Rh1CG395000 Rh1DG412000
rosa_wichuraiana	Rw1G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1451, 1827
AccB7I	CCANNNNNTGG	1 cut(s)	1337
AccBSI	CCGCTC	1 cut(s)	245
AccI	GTMKAC	2 cut(s)	39, 165
AccII	CGCG	2 cut(s)	209, 224
AccIII	TCCGGA	2 cut(s)	949, 1456
AciI	CCGC	9 cut(s)	26, 33, 222, 243, 313, 577, 995, 1106, 2124
AclWI	GGATC	3 cut(s)	1138, 1151, 1274
AcoI	YGGCCR	2 cut(s)	981, 2004
AcsI	RAATTY	2 cut(s)	650, 2048
AcuI	CTGAAG	2 cut(s)	1079, 1944
AcvI	CACGTG	1 cut(s)	1334
AcyI	GRCGYC	2 cut(s)	168, 634
AdeI	CACNNNGTG	1 cut(s)	1337
AfaI	GTAC	5 cut(s)	296, 305, 472, 1602, 1833
AfiI	CCNNNNNNNGG	3 cut(s)	32, 1154, 1337
AflIII	ACRYGT	1 cut(s)	1756
AhlI	ACTAGT	1 cut(s)	1385
AjnI	CCWGG	2 cut(s)	380, 2040
AloI	GAACNNNNNNTCC	1 cut(s)	29
Alw21I	GWGCWC	1 cut(s)	1069
Alw26I	GTCTC	5 cut(s)	73, 653, 869, 879, 1344
AlwI	GGATC	3 cut(s)	1138, 1151, 1274
Aor13HI	TCCGGA	2 cut(s)	949, 1456
AoxI	GGCC	7 cut(s)	235, 578, 955, 981, 1568, 1722, 2004
ApeKI	GCWGC	1 cut(s)	2137
ApoI	RAATTY	2 cut(s)	650, 2048
ArsI	GACNNNNNNTTYG	2 cut(s)	1568, 1600
AseI	ATTAAT	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	209, 211
AspS9I	GGNCC	3 cut(s)	643, 956, 2156
AsuHPI	GGTGA	5 cut(s)	370, 1454, 1526, 2003, 2087
AsuII	TTCGAA	1 cut(s)	1574
AvaII	GGWCC	2 cut(s)	643, 2156
BaeI	ACNNNNGTAYC	2 cut(s)	1823, 1856
BalI	TGGCCA	1 cut(s)	983
BamHI	GGATCC	1 cut(s)	1143
BanII	GRGCYC	1 cut(s)	1069
BauI	CACGAG	1 cut(s)	882
BbrPI	CACGTG	1 cut(s)	1334
BbsI	GAAGAC	5 cut(s)	244, 677, 1488, 1925, 1932
Bbv12I	GWGCWC	1 cut(s)	1069
BbvCI	CCTCAGC	1 cut(s)	1719
BbvI	GCAGC	1 cut(s)	2149
BccI	CCATC	5 cut(s)	80, 488, 537, 1358, 1517
BceAI	ACGGC	2 cut(s)	94, 155
BcgI	CGANNNNNNTGC	2 cut(s)	1526, 1560
BciT130I	CCWGG	2 cut(s)	382, 2042
BcoDI	GTCTC	5 cut(s)	73, 653, 869, 879, 1344
BcuI	ACTAGT	1 cut(s)	1385
BfaI	CTAG	7 cut(s)	278, 810, 1221, 1299, 1386, 1548, 1985
BglI	GCCNNNNNGGC	1 cut(s)	2060
BglII	AGATCT	1 cut(s)	1655
BisI	GCNGC	5 cut(s)	26, 222, 243, 578, 2138
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	5 cut(s)	27, 223, 244, 579, 2139
Bme1390I	CCNGG	2 cut(s)	382, 2042
Bme18I	GGWCC	2 cut(s)	643, 2156
BmgT120I	GGNCC	3 cut(s)	643, 956, 2156
BmiI	GGNNCC	3 cut(s)	1145, 1329, 1686
BmrFI	CCNGG	2 cut(s)	382, 2042
BmsI	GCATC	9 cut(s)	409, 466, 589, 844, 983, 1024, 1334, 1639, 2095
BpiI	GAAGAC	5 cut(s)	244, 677, 1488, 1925, 1932
BplI	GAGNNNNNCTC	2 cut(s)	2178, 2210
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	1719
Bpu1102I	GCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	1574
BpuEI	CTTGAG	3 cut(s)	669, 860, 1549
Bsa29I	ATCGAT	2 cut(s)	1362, 1667
BsaAI	YACGTR	1 cut(s)	1334
BsaHI	GRCGYC	2 cut(s)	168, 634
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	4 cut(s)	202, 232, 978, 1492
BsaWI	WCCGGW	3 cut(s)	247, 949, 1456
BsaXI	ACNNNNNCTCC	6 cut(s)	459, 489, 489, 519, 1948, 1978
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 1154, 1337
Bse118I	RCCGGY	2 cut(s)	265, 273
Bse1I	ACTGG	5 cut(s)	418, 984, 1290, 1604, 2055
Bse3DI	GCAATG	3 cut(s)	864, 1309, 1506
BseAI	TCCGGA	2 cut(s)	949, 1456
BseBI	CCWGG	2 cut(s)	382, 2042
BseCI	ATCGAT	2 cut(s)	1362, 1667
BseDI	CCNNGG	4 cut(s)	202, 232, 978, 1492
BseLI	CCNNNNNNNGG	3 cut(s)	32, 1154, 1337
BseMI	GCAATG	3 cut(s)	864, 1309, 1506
BseMII	CTCAG	4 cut(s)	410, 1082, 1416, 1710
BseNI	ACTGG	5 cut(s)	418, 984, 1290, 1604, 2055
BsePI	GCGCGC	1 cut(s)	207
BseRI	GAGGAG	6 cut(s)	122, 1250, 1253, 1365, 1677, 1770
BseXI	GCAGC	1 cut(s)	2149
BseYI	CCCAGC	3 cut(s)	452, 716, 1960
Bsh1236I	CGCG	2 cut(s)	209, 224
BshFI	GGCC	7 cut(s)	237, 580, 957, 983, 1570, 1724, 2006
BshVI	ATCGAT	2 cut(s)	1362, 1667
BsiHKAI	GWGCWC	1 cut(s)	1069
BsiSI	CCGG	5 cut(s)	248, 266, 274, 950, 1457
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	3 cut(s)	32, 1154, 1337
BsmAI	GTCTC	5 cut(s)	73, 653, 869, 879, 1344
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	7 cut(s)	237, 580, 957, 983, 1570, 1724, 2006
Bso31I	GGTCTC	1 cut(s)	73
Bsp119I	TTCGAA	1 cut(s)	1574
Bsp1286I	GDGCHC	1 cut(s)	1069
Bsp13I	TCCGGA	2 cut(s)	949, 1456
Bsp143I	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1655
Bsp1720I	GCTNAGC	1 cut(s)	396
Bsp19I	CCATGG	1 cut(s)	978
BspACI	CCGC	9 cut(s)	26, 33, 222, 243, 313, 577, 995, 1106, 2124
BspANI	GGCC	7 cut(s)	237, 580, 957, 983, 1570, 1724, 2006
BspCNI	CTCAG	4 cut(s)	409, 1081, 1417, 1711
BspDI	ATCGAT	2 cut(s)	1362, 1667
BspEI	TCCGGA	2 cut(s)	949, 1456
BspFNI	CGCG	2 cut(s)	209, 224
BspHI	TCATGA	1 cut(s)	1851
BspLI	GGNNCC	3 cut(s)	1145, 1329, 1686
BspPI	GGATC	3 cut(s)	1138, 1151, 1274
BspQI	GCTCTTC	2 cut(s)	1155, 1176
BspT104I	TTCGAA	1 cut(s)	1574
BspTNI	GGTCTC	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	245
BsrDI	GCAATG	3 cut(s)	864, 1309, 1506
BsrFI	RCCGGY	2 cut(s)	265, 273
BsrI	ACTGG	5 cut(s)	418, 984, 1290, 1604, 2055
BssAI	RCCGGY	2 cut(s)	265, 273
BssECI	CCNNGG	4 cut(s)	202, 232, 978, 1492
BssHII	GCGCGC	1 cut(s)	207
BssMI	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1655
BssNI	GRCGYC	2 cut(s)	168, 634
BssSI	CACGAG	1 cut(s)	882
BssT1I	CCWWGG	2 cut(s)	978, 1492
Bst2BI	CACGAG	1 cut(s)	882
Bst2UI	CCWGG	2 cut(s)	382, 2042
Bst4CI	ACNGT	7 cut(s)	101, 163, 180, 475, 1600, 1839, 2036
Bst6I	CTCTTC	2 cut(s)	1155, 1176
BstACI	GRCGYC	2 cut(s)	168, 634
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstBAI	YACGTR	1 cut(s)	1334
BstBI	TTCGAA	1 cut(s)	1574
BstC8I	GCNNGC	4 cut(s)	209, 317, 582, 2110
BstDEI	CTNAG	5 cut(s)	396, 1038, 1068, 1425, 1719
BstDSI	CCRYGG	1 cut(s)	978
BstEII	GGTNACC	1 cut(s)	1126
BstFNI	CGCG	2 cut(s)	209, 224
BstHHI	GCGC	2 cut(s)	209, 211
BstKTI	GATC	6 cut(s)	301, 438, 683, 1146, 1282, 1658
BstMAI	GTCTC	5 cut(s)	73, 653, 869, 879, 1344
BstMBI	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1655
BstMWI	GCNNNNNNNGC	5 cut(s)	608, 980, 1034, 1217, 2060
BstNI	CCWGG	2 cut(s)	382, 2042
BstNSI	RCATGY	2 cut(s)	1760, 2166
BstPI	GGTNACC	1 cut(s)	1126
BstSCI	CCNGG	2 cut(s)	380, 2040
BstUI	CGCG	2 cut(s)	209, 224
BstV1I	GCAGC	1 cut(s)	2149
BstV2I	GAAGAC	5 cut(s)	244, 677, 1488, 1925, 1932
BstX2I	RGATCY	2 cut(s)	1143, 1655
BstXI	CCANNNNNNTGG	1 cut(s)	2120
BstYI	RGATCY	2 cut(s)	1143, 1655
Bsu15I	ATCGAT	2 cut(s)	1362, 1667
BsuRI	GGCC	7 cut(s)	237, 580, 957, 983, 1570, 1724, 2006
BsuTUI	ATCGAT	2 cut(s)	1362, 1667
BtgI	CCRYGG	1 cut(s)	978
BtgZI	GCGATG	1 cut(s)	2083
BtsI	GCAGTG	1 cut(s)	1744
BtsIMutI	CAGTG	6 cut(s)	1283, 1611, 1616, 1725, 1744, 2062
Cac8I	GCNNGC	4 cut(s)	209, 317, 582, 2110
CciI	TCATGA	1 cut(s)	1851
CfoI	GCGC	2 cut(s)	209, 211
Cfr10I	RCCGGY	2 cut(s)	265, 273
Cfr13I	GGNCC	3 cut(s)	643, 956, 2156
ClaI	ATCGAT	2 cut(s)	1362, 1667
CseI	GACGC	2 cut(s)	176, 642
Csp6I	GTAC	5 cut(s)	295, 304, 471, 1601, 1832
CviQI	GTAC	5 cut(s)	295, 304, 471, 1601, 1832
DdeI	CTNAG	5 cut(s)	396, 1038, 1068, 1425, 1719
DpnI	GATC	6 cut(s)	300, 437, 682, 1145, 1281, 1657
DpnII	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1655
DraIII	CACNNNGTG	1 cut(s)	1337
EaeI	YGGCCR	2 cut(s)	981, 2004
Eam1104I	CTCTTC	2 cut(s)	1155, 1176
EarI	CTCTTC	2 cut(s)	1155, 1176
Ecl136II	GAGCTC	1 cut(s)	1067
Eco130I	CCWWGG	2 cut(s)	978, 1492
Eco147I	AGGCCT	1 cut(s)	1570
Eco24I	GRGCYC	1 cut(s)	1069
Eco31I	GGTCTC	1 cut(s)	73
Eco47I	GGWCC	2 cut(s)	643, 2156
Eco53kI	GAGCTC	1 cut(s)	1067
Eco57I	CTGAAG	2 cut(s)	1079, 1944
Eco72I	CACGTG	1 cut(s)	1334
Eco91I	GGTNACC	1 cut(s)	1126
EcoICRI	GAGCTC	1 cut(s)	1067
EcoO109I	RGGNCCY	1 cut(s)	2156
EcoO65I	GGTNACC	1 cut(s)	1126
EcoRII	CCWGG	2 cut(s)	380, 2040
EcoT14I	CCWWGG	2 cut(s)	978, 1492
EcoT38I	GRGCYC	1 cut(s)	1069
ErhI	CCWWGG	2 cut(s)	978, 1492
FaqI	GGGAC	1 cut(s)	166
FauI	CCCGC	3 cut(s)	320, 988, 1113
FauNDI	CATATG	1 cut(s)	1680
FblI	GTMKAC	2 cut(s)	39, 165
Fnu4HI	GCNGC	5 cut(s)	26, 222, 243, 578, 2138
FriOI	GRGCYC	1 cut(s)	1069
Fsp4HI	GCNGC	5 cut(s)	26, 222, 243, 578, 2138
FspBI	CTAG	7 cut(s)	278, 810, 1221, 1299, 1386, 1548, 1985
GlaI	GCGC	2 cut(s)	208, 210
GluI	GCNGC	5 cut(s)	26, 222, 243, 578, 2138
GsaI	CCCAGC	3 cut(s)	456, 720, 1964
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	7 cut(s)	237, 580, 957, 983, 1570, 1724, 2006
HapII	CCGG	5 cut(s)	248, 266, 274, 950, 1457
HgaI	GACGC	2 cut(s)	176, 642
HhaI	GCGC	2 cut(s)	209, 211
Hin1I	GRCGYC	2 cut(s)	168, 634
Hin6I	GCGC	2 cut(s)	207, 209
HinP1I	GCGC	2 cut(s)	207, 209
HincII	GTYRAC	1 cut(s)	925
HindII	GTYRAC	1 cut(s)	925
HindIII	AAGCTT	3 cut(s)	1248, 1694, 1874
HpaI	GTTAAC	1 cut(s)	925
HpaII	CCGG	5 cut(s)	248, 266, 274, 950, 1457
HphI	GGTGA	5 cut(s)	370, 1454, 1526, 2003, 2087
Hpy166II	GTNNAC	7 cut(s)	40, 166, 271, 342, 520, 925, 1616
Hpy188I	TCNGA	7 cut(s)	328, 1227, 1426, 1648, 1813, 1843, 1909
Hpy188III	TCNNGA	5 cut(s)	147, 950, 1007, 1457, 1852
Hpy8I	GTNNAC	7 cut(s)	40, 166, 271, 342, 520, 925, 1616
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	7 cut(s)	634, 787, 947, 1389, 1417, 1581, 2147
HpyCH4III	ACNGT	7 cut(s)	101, 163, 180, 475, 1600, 1839, 2036
HpyCH4IV	ACGT	3 cut(s)	797, 1079, 1333
HpyCH4V	TGCA	5 cut(s)	857, 1307, 1347, 2108, 2162
HpyF10VI	GCNNNNNNNGC	5 cut(s)	608, 980, 1034, 1217, 2060
HpyF3I	CTNAG	5 cut(s)	396, 1038, 1068, 1425, 1719
HpySE526I	ACGT	3 cut(s)	797, 1079, 1333
Hsp92I	GRCGYC	2 cut(s)	168, 634
HspAI	GCGC	2 cut(s)	207, 209
Kpn2I	TCCGGA	2 cut(s)	949, 1456
KspAI	GTTAAC	1 cut(s)	925
Kzo9I	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1655
LguI	GCTCTTC	2 cut(s)	1155, 1176
LmnI	GCTCC	6 cut(s)	250, 952, 1496, 1690, 1783, 1969
Lsp1109I	GCAGC	1 cut(s)	2149
LweI	GCATC	9 cut(s)	409, 466, 589, 844, 983, 1024, 1334, 1639, 2095
MaeI	CTAG	7 cut(s)	278, 810, 1221, 1299, 1386, 1548, 1985
MaeII	ACGT	3 cut(s)	797, 1079, 1333
MaeIII	GTNAC	7 cut(s)	19, 376, 1126, 1804, 1856, 1991, 2083
MalI	GATC	6 cut(s)	300, 437, 682, 1145, 1281, 1657
MbiI	CCGCTC	1 cut(s)	245
MboI	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1655
MfeI	CAATTG	2 cut(s)	816, 1797
MflI	RGATCY	2 cut(s)	1143, 1655
MhlI	GDGCHC	1 cut(s)	1069
MlsI	TGGCCA	1 cut(s)	983
MluNI	TGGCCA	1 cut(s)	983
MlyI	GAGTC	4 cut(s)	45, 159, 667, 1556
MmeI	TCCRAC	4 cut(s)	160, 737, 1135, 1489
Mox20I	TGGCCA	1 cut(s)	983
MroI	TCCGGA	2 cut(s)	949, 1456
MroXI	GAANNNNTTC	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	983
MslI	CAYNNNNRTG	3 cut(s)	549, 1773, 2118
Msp20I	TGGCCA	1 cut(s)	983
MspA1I	CMGCKG	2 cut(s)	28, 1718
MspI	CCGG	5 cut(s)	248, 266, 274, 950, 1457
MspR9I	CCNGG	2 cut(s)	382, 2042
MunI	CAATTG	2 cut(s)	816, 1797
MvaI	CCWGG	2 cut(s)	382, 2042
MvnI	CGCG	2 cut(s)	209, 224
MwoI	GCNNNNNNNGC	5 cut(s)	608, 980, 1034, 1217, 2060
NcoI	CCATGG	1 cut(s)	978
NdeI	CATATG	1 cut(s)	1680
NdeII	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1655
NlaIV	GGNNCC	3 cut(s)	1145, 1329, 1686
NmeAIII	GCCGAG	2 cut(s)	183, 213
NmuCI	GTSAC	4 cut(s)	376, 1804, 1991, 2083
NspI	RCATGY	2 cut(s)	1760, 2166
NspV	TTCGAA	1 cut(s)	1574
PagI	TCATGA	1 cut(s)	1851
PauI	GCGCGC	1 cut(s)	207
PceI	AGGCCT	1 cut(s)	1570
PciI	ACATGT	1 cut(s)	1756
PciSI	GCTCTTC	2 cut(s)	1155, 1176
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 159
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	6 cut(s)	49, 359, 749, 1042, 1669, 1904
PflFI	GACNNNGTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	1337
PkrI	GCNGC	5 cut(s)	27, 223, 244, 579, 2139
PleI	GAGTC	4 cut(s)	44, 158, 667, 1556
PmaCI	CACGTG	1 cut(s)	1334
PmlI	CACGTG	1 cut(s)	1334
PpsI	GAGTC	4 cut(s)	44, 158, 667, 1556
Ppu21I	YACGTR	1 cut(s)	1334
PpuMI	RGGWCCY	1 cut(s)	2156
PscI	ACATGT	1 cut(s)	1756
PshBI	ATTAAT	1 cut(s)	558
PsiI	TTATAA	2 cut(s)	1451, 1827
Psp124BI	GAGCTC	1 cut(s)	1069
Psp5II	RGGWCCY	1 cut(s)	2156
Psp6I	CCWGG	2 cut(s)	380, 2040
PspCI	CACGTG	1 cut(s)	1334
PspEI	GGTNACC	1 cut(s)	1126
PspFI	CCCAGC	3 cut(s)	452, 716, 1960
PspGI	CCWGG	2 cut(s)	380, 2040
PspN4I	GGNNCC	3 cut(s)	1145, 1329, 1686
PspPI	GGNCC	3 cut(s)	643, 956, 2156
PspPPI	RGGWCCY	1 cut(s)	2156
PsuI	RGATCY	2 cut(s)	1143, 1655
PsyI	GACNNNGTC	1 cut(s)	170
PteI	GCGCGC	1 cut(s)	207
PvuII	CAGCTG	1 cut(s)	1718
RsaI	GTAC	5 cut(s)	296, 305, 472, 1602, 1833
RsaNI	GTAC	5 cut(s)	295, 304, 471, 1601, 1832
RseI	CAYNNNNRTG	3 cut(s)	549, 1773, 2118
SacI	GAGCTC	1 cut(s)	1069
SapI	GCTCTTC	2 cut(s)	1155, 1176
SatI	GCNGC	5 cut(s)	26, 222, 243, 578, 2138
Sau3AI	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1655
Sau96I	GGNCC	3 cut(s)	643, 956, 2156
SchI	GAGTC	4 cut(s)	45, 159, 667, 1556
ScrFI	CCNGG	2 cut(s)	382, 2042
SduI	GDGCHC	1 cut(s)	1069
SfaNI	GCATC	9 cut(s)	409, 466, 589, 844, 983, 1024, 1334, 1639, 2095
SfuI	TTCGAA	1 cut(s)	1574
SinI	GGWCC	2 cut(s)	643, 2156
SmiMI	CAYNNNNRTG	3 cut(s)	549, 1773, 2118
SmlI	CTYRAG	3 cut(s)	684, 839, 1564
SmoI	CTYRAG	3 cut(s)	684, 839, 1564
SpeI	ACTAGT	1 cut(s)	1385
SseBI	AGGCCT	1 cut(s)	1570
SsiI	CCGC	9 cut(s)	26, 33, 222, 243, 313, 577, 995, 1106, 2124
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	7 cut(s)	278, 810, 1221, 1299, 1386, 1548, 1985
SstI	GAGCTC	1 cut(s)	1069
StuI	AGGCCT	1 cut(s)	1570
StyD4I	CCNGG	2 cut(s)	380, 2040
StyI	CCWWGG	2 cut(s)	978, 1492
TaaI	ACNGT	7 cut(s)	101, 163, 180, 475, 1600, 1839, 2036
TaiI	ACGT	3 cut(s)	800, 1082, 1336
TaqII	GACCGA	1 cut(s)	660
TauI	GCSGC	4 cut(s)	28, 224, 245, 580
TfiI	GAWTC	6 cut(s)	49, 359, 749, 1042, 1669, 1904
TscAI	CASTG	6 cut(s)	1290, 1611, 1623, 1732, 1751, 2062
TseFI	GTSAC	4 cut(s)	376, 1804, 1991, 2083
TseI	GCWGC	1 cut(s)	2137
Tsp45I	GTSAC	4 cut(s)	376, 1804, 1991, 2083
TspDTI	ATGAA	6 cut(s)	1191, 1428, 1494, 1502, 1697, 1902
TspRI	CASTG	6 cut(s)	1290, 1611, 1623, 1732, 1751, 2062
Tth111I	GACNNNGTC	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	1337
VpaK11BI	GGWCC	2 cut(s)	643, 2156
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	2 cut(s)	650, 2048
XceI	RCATGY	2 cut(s)	1760, 2166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XmiI	GTMKAC	2 cut(s)	39, 165
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	7 cut(s)	278, 810, 1221, 1299, 1386, 1548, 1985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.