Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006213

Physical Location & Seq

Genomic Coordinates Forward (+)

19408072 .. 19410269

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21270.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGAACTTCAGTTCAGGTGACGCCGCTGTGCGGCGTATATAACGAGAATCCGCTGTCGTATTTGGTCTCAATCGACGGCTTCAACTTCCTCATCGACTGCGGCTGGAACGACCACTTCGACCCCTCCCTCCTTCAACCCCTCTTCAGGGTAGCTTCGACGGTGGATGCAGTCTTGCTGTCGCATCCGGATACACTTCACCTCGGCGCGCTTCCGTACGCCATGAAGCAGCTCGGCCTGTCAGCTCCCGTCTTCTCCACCGAGCCGGTTTACAGATTAGGTCTCCTCACTATGTATGATCAGTTCCTCTCTCGCAAGCAAGTATCGGACTTTGAGCTTTTTACACTAGATGACATTGATTCTGCATTCCAAAATGTCACCAGATTAACCTATGCACAAAATCACCATCTTGCTGGCAAAGGAGAGGGCATTGTGATTTCTTCCCATGTGTCTGGACATCTCTTGGGTGGTACCGTCTGGAAGATAACAAAGGATGGAAAGGATGTTATATATGCCGTGGACTTTAACCATCGAAAAGAGAAGCATTTGAATGGAATTAATCAATCAGCCTCCGTACGCCCTGCTGTTCTGATAACAGATGCCTACAATGCTTTGAACAATCAGCCTTATAGACGCCAAAAGGACAAGGAATTTACAGATACTATAAAGAAGACTCTGCGATCTGATGGGAATGTGCTATTACCTGTTGATACTGCTGGGCGGGTTATGGAACTTGTCCAGATATTGGAATCGTGTTGGACAGAGGAAAATTTGAACTATCCCATCTTCTTCCTAACATACGTTGCATCAAGCACAATCGATTACATAAAAAGTTTCCTTGAGTGGATGAGTGATGCTATAGCAAAGTCCTTTGAGAAGACACGTGAGAATGTTTTTAATTTGAAGCAAATCAGACTTTTAGTTAACAAGAGTGAACTTGACAATGCTCCTGATGGTCCCAAGGTTGTTTTAGCATCCATGGCCAGTTTAGAAGCTGGTTTCTCTCATGATATATTTGTTGAATGGGCAAATGATGCCAAGAATCTTGTGCTTTTTACGAACGAGCCCAGTTTGGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

361

Amino Acids

40.34

Weight (kDa)

5.28

Isoelectric Point (pI)

27.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23880
fragaria_vesca	FvH4_5g14450 FvH4_7g29660 FvH4_7g29660
malus_domestica	MD01G1203600.v1.1 MD07G1272900.v1.1
prunus_persica	Prupe.2G296200_v2.0.a1 Prupe.2G296200_v2.0.a1
pyrus_communis	pycom01g21270 pycom01g21280 pycom07g24930
rosa_chinensis	RchiOBHm_Chr1g0377671 RchiOBHm_Chr1g0377681 RchiOBHm_Chr1g0379161 RchiOBHm_Chr1g0379331
rosa_laevigata	RLG00000026506 RLG00000026773
rosa_multiflora	Rmu_sc0002832.1_g000015
rosa_roxburghii	Rroxscaffold_4G00281130
rosa_rugosa	Rorug01G0404200 Rorug01G0404300
rosa_samantha	Rh1AG428300 Rh1BG381000 Rh1CG000300 Rh1CG395000 Rh1DG412000
rosa_wichuraiana	Rw1G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	745
AccII	CGCG	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	5 cut(s)	26, 33, 53, 102, 721
AcoI	YGGCCR	1 cut(s)	981
AcsI	RAATTY	2 cut(s)	650, 769
AcuI	CTGAAG	1 cut(s)	130
AcvI	CACGTG	1 cut(s)	884
AcyI	GRCGYC	2 cut(s)	23, 634
AfaI	GTAC	3 cut(s)	218, 472, 576
AfiI	CCNNNNNNNGG	4 cut(s)	32, 147, 148, 745
AflIII	ACRYGT	1 cut(s)	881
AgsI	TTSAA	7 cut(s)	85, 137, 550, 616, 775, 904, 1022
AloI	GAACNNNNNNTCC	1 cut(s)	29
AluBI	AGCT	5 cut(s)	155, 232, 245, 337, 995
AluI	AGCT	5 cut(s)	155, 232, 245, 337, 995
Alw26I	GTCTC	2 cut(s)	73, 287
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	2 cut(s)	235, 981
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	2 cut(s)	650, 769
AseI	ATTAAT	1 cut(s)	558
Asp718I	GGTACC	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	209, 211
AspS9I	GGNCC	1 cut(s)	956
AsuHPI	GGTGA	4 cut(s)	31, 191, 370, 395
AvaII	GGWCC	1 cut(s)	956
BalI	TGGCCA	1 cut(s)	983
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	1068
BbrPI	CACGTG	1 cut(s)	884
BbsI	GAAGAC	3 cut(s)	244, 677, 884
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	6 cut(s)	414, 488, 537, 680, 791, 947
BceAI	ACGGC	2 cut(s)	94, 500
BciVI	GTATCC	1 cut(s)	184
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	73, 287
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	858
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	4 cut(s)	26, 34, 103, 230
BlsI	GCNGC	4 cut(s)	27, 35, 104, 231
Bme18I	GGWCC	1 cut(s)	956
BmgT120I	GGNCC	1 cut(s)	956
BmiI	GGNNCC	2 cut(s)	472, 958
BmrI	ACTGGG	1 cut(s)	1062
BmsI	GCATC	7 cut(s)	157, 193, 589, 815, 844, 983, 1024
BmuI	ACTGGG	1 cut(s)	1062
BpiI	GAAGAC	3 cut(s)	244, 677, 884
BpuEI	CTTGAG	1 cut(s)	860
Bsa29I	ATCGAT	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	884
BsaHI	GRCGYC	2 cut(s)	23, 634
BsaI	GGTCTC	2 cut(s)	73, 287
BsaJI	CCNNGG	4 cut(s)	202, 516, 960, 978
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 147, 148, 745
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	984, 1068
BseAI	TCCGGA	1 cut(s)	187
BseCI	ATCGAT	1 cut(s)	819
BseDI	CCNNGG	4 cut(s)	202, 516, 960, 978
BseGI	GGATG	6 cut(s)	172, 184, 499, 508, 852, 974
BseLI	CCNNNNNNNGG	4 cut(s)	32, 147, 148, 745
BseNI	ACTGG	2 cut(s)	984, 1068
BsePI	GCGCGC	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	716
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	237, 983
BshNI	GGYRCC	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	819
BsiSI	CCGG	2 cut(s)	188, 266
BsiWI	CGTACG	2 cut(s)	216, 574
BslFI	GGGAC	1 cut(s)	942
BslI	CCNNNNNNNGG	4 cut(s)	32, 147, 148, 745
BsmAI	GTCTC	2 cut(s)	73, 287
BsmFI	GGGAC	1 cut(s)	942
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	237, 983
Bso31I	GGTCTC	2 cut(s)	73, 287
Bsp1286I	GDGCHC	1 cut(s)	1068
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	298, 680
Bsp19I	CCATGG	1 cut(s)	978
BspACI	CCGC	5 cut(s)	26, 33, 53, 102, 721
BspANI	GGCC	2 cut(s)	237, 983
BspDI	ATCGAT	1 cut(s)	819
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	1006
BspLI	GGNNCC	2 cut(s)	472, 958
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	2 cut(s)	73, 287
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	984, 1068
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	4 cut(s)	202, 516, 960, 978
BssHII	GCGCGC	1 cut(s)	207
BssMI	GATC	2 cut(s)	298, 680
BssNI	GRCGYC	2 cut(s)	23, 634
BssT1I	CCWWGG	2 cut(s)	960, 978
Bst4CI	ACNGT	2 cut(s)	163, 475
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	2 cut(s)	23, 634
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstBAI	YACGTR	1 cut(s)	884
BstC8I	GCNNGC	3 cut(s)	209, 317, 415
BstDSI	CCRYGG	2 cut(s)	516, 978
BstF5I	GGATG	6 cut(s)	172, 184, 499, 508, 852, 974
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	2 cut(s)	209, 211
BstKTI	GATC	2 cut(s)	301, 683
BstMAI	GTCTC	2 cut(s)	73, 287
BstMBI	GATC	2 cut(s)	298, 680
BstMWI	GCNNNNNNNGC	3 cut(s)	608, 980, 1034
BstSFI	CTRYAG	1 cut(s)	858
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	3 cut(s)	244, 677, 884
BstXI	CCANNNNNNTGG	2 cut(s)	413, 452
Bsu15I	ATCGAT	1 cut(s)	819
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	237, 983
BsuTUI	ATCGAT	1 cut(s)	819
BtgI	CCRYGG	2 cut(s)	516, 978
BtsCI	GGATG	6 cut(s)	172, 184, 499, 508, 852, 974
Cac8I	GCNNGC	3 cut(s)	209, 317, 415
CciI	TCATGA	1 cut(s)	1006
CfoI	GCGC	2 cut(s)	209, 211
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	956
ClaI	ATCGAT	1 cut(s)	819
CseI	GACGC	2 cut(s)	31, 642
Csp6I	GTAC	3 cut(s)	217, 471, 575
CviAII	CATG	4 cut(s)	223, 446, 979, 1007
CviQI	GTAC	3 cut(s)	217, 471, 575
DpnI	GATC	2 cut(s)	300, 682
DpnII	GATC	2 cut(s)	298, 680
EaeI	YGGCCR	1 cut(s)	981
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	960, 978
Eco24I	GRGCYC	1 cut(s)	1068
Eco31I	GGTCTC	2 cut(s)	73, 287
Eco47I	GGWCC	1 cut(s)	956
Eco57I	CTGAAG	1 cut(s)	130
Eco72I	CACGTG	1 cut(s)	884
EcoT14I	CCWWGG	2 cut(s)	960, 978
EcoT38I	GRGCYC	1 cut(s)	1068
ErhI	CCWWGG	2 cut(s)	960, 978
FaeI	CATG	4 cut(s)	226, 449, 982, 1010
FaqI	GGGAC	1 cut(s)	942
FatI	CATG	4 cut(s)	222, 445, 978, 1006
FauI	CCCGC	1 cut(s)	714
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	26, 34, 103, 230
FokI	GGATG	6 cut(s)	171, 179, 506, 515, 859, 961
FriOI	GRGCYC	1 cut(s)	1068
Fsp4HI	GCNGC	4 cut(s)	26, 34, 103, 230
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	2 cut(s)	208, 210
GluI	GCNGC	4 cut(s)	26, 34, 103, 230
GsaI	CCCAGC	1 cut(s)	720
HaeIII	GGCC	2 cut(s)	237, 983
HapII	CCGG	2 cut(s)	188, 266
HgaI	GACGC	2 cut(s)	31, 642
HhaI	GCGC	2 cut(s)	209, 211
Hin1I	GRCGYC	2 cut(s)	23, 634
Hin1II	CATG	4 cut(s)	226, 449, 982, 1010
Hin6I	GCGC	2 cut(s)	207, 209
HinP1I	GCGC	2 cut(s)	207, 209
HincII	GTYRAC	1 cut(s)	925
HindII	GTYRAC	1 cut(s)	925
HinfI	GANTC	5 cut(s)	49, 359, 673, 749, 1042
HpaI	GTTAAC	1 cut(s)	925
HpaII	CCGG	2 cut(s)	188, 266
HphI	GGTGA	4 cut(s)	31, 191, 370, 395
Hpy166II	GTNNAC	4 cut(s)	271, 520, 925, 935
Hpy188I	TCNGA	4 cut(s)	328, 591, 685, 914
Hpy188III	TCNNGA	6 cut(s)	188, 453, 478, 739, 950, 1007
Hpy8I	GTNNAC	4 cut(s)	271, 520, 925, 935
Hpy99I	CGWCG	2 cut(s)	80, 163
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	2 cut(s)	163, 475
HpyCH4IV	ACGT	2 cut(s)	801, 883
HpyCH4V	TGCA	4 cut(s)	170, 365, 395, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	608, 980, 1034
HpySE526I	ACGT	2 cut(s)	801, 883
Hsp92I	GRCGYC	2 cut(s)	23, 634
Hsp92II	CATG	4 cut(s)	226, 449, 982, 1010
HspAI	GCGC	2 cut(s)	207, 209
Kpn2I	TCCGGA	1 cut(s)	187
KpnI	GGTACC	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	298
KspAI	GTTAAC	1 cut(s)	925
Kzo9I	GATC	2 cut(s)	298, 680
LmnI	GCTCC	2 cut(s)	250, 952
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	7 cut(s)	157, 193, 589, 815, 844, 983, 1024
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	2 cut(s)	801, 883
MaeIII	GTNAC	2 cut(s)	19, 376
MalI	GATC	2 cut(s)	300, 682
MboI	GATC	2 cut(s)	298, 680
MboII	GAAGA	8 cut(s)	136, 244, 432, 493, 682, 778, 781, 889
MhlI	GDGCHC	1 cut(s)	1068
MlsI	TGGCCA	1 cut(s)	983
MluCI	AATT	4 cut(s)	555, 650, 769, 898
MluNI	TGGCCA	1 cut(s)	983
MlyI	GAGTC	1 cut(s)	667
MmeI	TCCRAC	1 cut(s)	737
Mox20I	TGGCCA	1 cut(s)	983
MroI	TCCGGA	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	983
MseI	TTAA	5 cut(s)	386, 525, 558, 897, 924
MslI	CAYNNNNRTG	1 cut(s)	549
Msp20I	TGGCCA	1 cut(s)	983
MspA1I	CMGCKG	2 cut(s)	28, 55
MspI	CCGG	2 cut(s)	188, 266
Mva1269I	GAATGC	1 cut(s)	365
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	608, 980, 1034
NcoI	CCATGG	1 cut(s)	978
NdeII	GATC	2 cut(s)	298, 680
NlaIII	CATG	4 cut(s)	226, 449, 982, 1010
NlaIV	GGNNCC	2 cut(s)	472, 958
NmeAIII	GCCGAG	2 cut(s)	183, 213
NmuCI	GTSAC	2 cut(s)	19, 376
PagI	TCATGA	1 cut(s)	1006
PauI	GCGCGC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	4 cut(s)	49, 359, 749, 1042
Pfl23II	CGTACG	2 cut(s)	216, 574
PflMI	CCANNNNNTGG	1 cut(s)	745
PkrI	GCNGC	4 cut(s)	27, 35, 104, 231
PleI	GAGTC	1 cut(s)	667
PmaCI	CACGTG	1 cut(s)	884
PmlI	CACGTG	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	667
Ppu21I	YACGTR	1 cut(s)	884
PshBI	ATTAAT	1 cut(s)	558
PspCI	CACGTG	1 cut(s)	884
PspFI	CCCAGC	1 cut(s)	716
PspLI	CGTACG	2 cut(s)	216, 574
PspN4I	GGNNCC	2 cut(s)	472, 958
PspPI	GGNCC	1 cut(s)	956
PsrI	GAACNNNNNNTAC	2 cut(s)	287, 319
PteI	GCGCGC	1 cut(s)	207
RsaI	GTAC	3 cut(s)	218, 472, 576
RsaNI	GTAC	3 cut(s)	217, 471, 575
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	5 cut(s)	386, 525, 558, 897, 924
SatI	GCNGC	4 cut(s)	26, 34, 103, 230
Sau3AI	GATC	2 cut(s)	298, 680
Sau96I	GGNCC	1 cut(s)	956
SchI	GAGTC	1 cut(s)	667
SduI	GDGCHC	1 cut(s)	1068
SfaNI	GCATC	7 cut(s)	157, 193, 589, 815, 844, 983, 1024
SfcI	CTRYAG	1 cut(s)	858
SinI	GGWCC	1 cut(s)	956
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
Sse9I	AATT	4 cut(s)	555, 650, 769, 898
SsiI	CCGC	5 cut(s)	26, 33, 53, 102, 721
SspMI	CTAG	1 cut(s)	347
StyI	CCWWGG	2 cut(s)	960, 978
TaaI	ACNGT	2 cut(s)	163, 475
TaiI	ACGT	2 cut(s)	804, 886
TaqI	TCGA	6 cut(s)	75, 96, 120, 158, 532, 819
TasI	AATT	4 cut(s)	555, 650, 769, 898
TauI	GCSGC	3 cut(s)	28, 36, 105
TfiI	GAWTC	4 cut(s)	49, 359, 749, 1042
Tru1I	TTAA	5 cut(s)	386, 525, 558, 897, 924
Tru9I	TTAA	5 cut(s)	386, 525, 558, 897, 924
TseFI	GTSAC	2 cut(s)	19, 376
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	2 cut(s)	19, 376
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	2 cut(s)	204, 562
Van91I	CCANNNNNTGG	1 cut(s)	745
VpaK11BI	GGWCC	1 cut(s)	956
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	2 cut(s)	650, 769
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.