Cleavage and polyadenylation specificity factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G23880 |
| fragaria_vesca | FvH4_5g14450 FvH4_7g29660 FvH4_7g29660 |
| malus_domestica | MD01G1203600.v1.1 MD07G1272900.v1.1 |
| prunus_persica | Prupe.2G296200_v2.0.a1 Prupe.2G296200_v2.0.a1 |
| pyrus_communis | pycom01g21270 pycom01g21280 pycom07g24930 |
| rosa_chinensis | RchiOBHm_Chr1g0377671 RchiOBHm_Chr1g0377681 RchiOBHm_Chr1g0379161 RchiOBHm_Chr1g0379331 |
| rosa_laevigata | RLG00000026506 RLG00000026773 |
| rosa_multiflora | Rmu_sc0002832.1_g000015 |
| rosa_roxburghii | Rroxscaffold_4G00281130 |
| rosa_rugosa | Rorug01G0404200 Rorug01G0404300 |
| rosa_samantha | Rh1AG428300 Rh1BG381000 Rh1CG000300 Rh1CG395000 Rh1DG412000 |
| rosa_wichuraiana | Rw1G037040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 473, 849 |
| AccIII | TCCGGA | 1 cut(s) | 478 |
| AciI | CCGC | 4 cut(s) | 17, 128, 360, 1146 |
| AclWI | GGATC | 3 cut(s) | 160, 173, 296 |
| AcoI | YGGCCR | 2 cut(s) | 3, 1026 |
| AcsI | RAATTY | 1 cut(s) | 1070 |
| AcuI | CTGAAG | 1 cut(s) | 101 |
| AcvI | CACGTG | 1 cut(s) | 356 |
| AfaI | GTAC | 2 cut(s) | 624, 855 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 176, 359 |
| AflIII | ACRYGT | 1 cut(s) | 778 |
| AgsI | TTSAA | 7 cut(s) | 597, 760, 775, 812, 1036, 1070, 1175 |
| AhlI | ACTAGT | 1 cut(s) | 407 |
| AjnI | CCWGG | 1 cut(s) | 1062 |
| Alw21I | GWGCWC | 1 cut(s) | 91 |
| Alw26I | GTCTC | 1 cut(s) | 366 |
| AlwI | GGATC | 3 cut(s) | 160, 173, 296 |
| Aor13HI | TCCGGA | 1 cut(s) | 478 |
| AoxI | GGCC | 5 cut(s) | 3, 590, 661, 744, 1026 |
| ApeKI | GCWGC | 1 cut(s) | 1159 |
| ApoI | RAATTY | 1 cut(s) | 1070 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 590, 622 |
| AspS9I | GGNCC | 2 cut(s) | 661, 1178 |
| AsuHPI | GGTGA | 4 cut(s) | 476, 548, 1025, 1109 |
| AvaII | GGWCC | 1 cut(s) | 1178 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 845, 878 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 1 cut(s) | 165 |
| BanII | GRGCYC | 1 cut(s) | 91 |
| BbrPI | CACGTG | 1 cut(s) | 356 |
| BbsI | GAAGAC | 3 cut(s) | 510, 947, 954 |
| Bbv12I | GWGCWC | 1 cut(s) | 91 |
| BbvCI | CCTCAGC | 1 cut(s) | 741 |
| BbvI | GCAGC | 1 cut(s) | 1171 |
| BccI | CCATC | 2 cut(s) | 380, 539 |
| BceAI | ACGGC | 1 cut(s) | 648 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 548, 582 |
| BciT130I | CCWGG | 1 cut(s) | 1064 |
| BcoDI | GTCTC | 1 cut(s) | 366 |
| BcuI | ACTAGT | 1 cut(s) | 407 |
| BfaI | CTAG | 5 cut(s) | 243, 321, 408, 570, 1007 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1082 |
| BglII | AGATCT | 1 cut(s) | 677 |
| BisI | GCNGC | 1 cut(s) | 1160 |
| BlsI | GCNGC | 1 cut(s) | 1161 |
| Bme1390I | CCNGG | 1 cut(s) | 1064 |
| Bme18I | GGWCC | 1 cut(s) | 1178 |
| BmgT120I | GGNCC | 2 cut(s) | 661, 1178 |
| BmiI | GGNNCC | 3 cut(s) | 167, 351, 708 |
| BmrFI | CCNGG | 1 cut(s) | 1064 |
| BmsI | GCATC | 4 cut(s) | 46, 356, 661, 1117 |
| BpiI | GAAGAC | 3 cut(s) | 510, 947, 954 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1200, 1232 |
| Bpu10I | CCTNAGC | 1 cut(s) | 741 |
| BpuEI | CTTGAG | 1 cut(s) | 571 |
| Bsa29I | ATCGAT | 2 cut(s) | 384, 689 |
| BsaAI | YACGTR | 1 cut(s) | 356 |
| BsaJI | CCNNGG | 1 cut(s) | 514 |
| BsaWI | WCCGGW | 1 cut(s) | 478 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 970, 1000 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 176, 359 |
| Bse1I | ACTGG | 4 cut(s) | 6, 312, 626, 1077 |
| Bse3DI | GCAATG | 2 cut(s) | 331, 528 |
| BseAI | TCCGGA | 1 cut(s) | 478 |
| BseBI | CCWGG | 1 cut(s) | 1064 |
| BseCI | ATCGAT | 2 cut(s) | 384, 689 |
| BseDI | CCNNGG | 1 cut(s) | 514 |
| BseGI | GGATG | 6 cut(s) | 371, 460, 487, 505, 550, 1132 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 176, 359 |
| BseMI | GCAATG | 2 cut(s) | 331, 528 |
| BseMII | CTCAG | 3 cut(s) | 104, 438, 732 |
| BseNI | ACTGG | 4 cut(s) | 6, 312, 626, 1077 |
| BseRI | GAGGAG | 5 cut(s) | 272, 275, 387, 699, 792 |
| BseXI | GCAGC | 1 cut(s) | 1171 |
| BseYI | CCCAGC | 1 cut(s) | 982 |
| BshFI | GGCC | 5 cut(s) | 5, 592, 663, 746, 1028 |
| BshVI | ATCGAT | 2 cut(s) | 384, 689 |
| BsiHKAI | GWGCWC | 1 cut(s) | 91 |
| BsiSI | CCGG | 1 cut(s) | 479 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 176, 359 |
| BsmAI | GTCTC | 1 cut(s) | 366 |
| BsnI | GGCC | 5 cut(s) | 5, 592, 663, 746, 1028 |
| Bsp1286I | GDGCHC | 1 cut(s) | 91 |
| Bsp13I | TCCGGA | 1 cut(s) | 478 |
| Bsp143I | GATC | 3 cut(s) | 165, 301, 677 |
| BspACI | CCGC | 4 cut(s) | 17, 128, 360, 1146 |
| BspANI | GGCC | 5 cut(s) | 5, 592, 663, 746, 1028 |
| BspCNI | CTCAG | 3 cut(s) | 103, 439, 733 |
| BspDI | ATCGAT | 2 cut(s) | 384, 689 |
| BspEI | TCCGGA | 1 cut(s) | 478 |
| BspHI | TCATGA | 1 cut(s) | 873 |
| BspLI | GGNNCC | 3 cut(s) | 167, 351, 708 |
| BspPI | GGATC | 3 cut(s) | 160, 173, 296 |
| BspQI | GCTCTTC | 2 cut(s) | 177, 198 |
| BsrDI | GCAATG | 2 cut(s) | 331, 528 |
| BsrI | ACTGG | 4 cut(s) | 6, 312, 626, 1077 |
| BssECI | CCNNGG | 1 cut(s) | 514 |
| BssMI | GATC | 3 cut(s) | 165, 301, 677 |
| BssT1I | CCWWGG | 1 cut(s) | 514 |
| Bst2UI | CCWGG | 1 cut(s) | 1064 |
| Bst4CI | ACNGT | 3 cut(s) | 622, 861, 1058 |
| Bst6I | CTCTTC | 2 cut(s) | 177, 198 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 56 |
| BstBAI | YACGTR | 1 cut(s) | 356 |
| BstC8I | GCNNGC | 1 cut(s) | 1132 |
| BstDEI | CTNAG | 4 cut(s) | 60, 90, 447, 741 |
| BstEII | GGTNACC | 1 cut(s) | 148 |
| BstF5I | GGATG | 6 cut(s) | 371, 460, 487, 505, 550, 1132 |
| BstKTI | GATC | 3 cut(s) | 168, 304, 680 |
| BstMAI | GTCTC | 1 cut(s) | 366 |
| BstMBI | GATC | 3 cut(s) | 165, 301, 677 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 56, 239, 366, 1082 |
| BstNI | CCWGG | 1 cut(s) | 1064 |
| BstNSI | RCATGY | 2 cut(s) | 782, 1188 |
| BstPI | GGTNACC | 1 cut(s) | 148 |
| BstSCI | CCNGG | 1 cut(s) | 1062 |
| BstV1I | GCAGC | 1 cut(s) | 1171 |
| BstV2I | GAAGAC | 3 cut(s) | 510, 947, 954 |
| BstX2I | RGATCY | 2 cut(s) | 165, 677 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1142 |
| BstYI | RGATCY | 2 cut(s) | 165, 677 |
| Bsu15I | ATCGAT | 2 cut(s) | 384, 689 |
| BsuRI | GGCC | 5 cut(s) | 5, 592, 663, 746, 1028 |
| BsuTUI | ATCGAT | 2 cut(s) | 384, 689 |
| BtgZI | GCGATG | 1 cut(s) | 1105 |
| BtsCI | GGATG | 6 cut(s) | 371, 460, 487, 505, 550, 1132 |
| BtsI | GCAGTG | 1 cut(s) | 766 |
| BtsIMutI | CAGTG | 6 cut(s) | 305, 633, 638, 747, 766, 1084 |
| Cac8I | GCNNGC | 1 cut(s) | 1132 |
| CciI | TCATGA | 1 cut(s) | 873 |
| Cfr13I | GGNCC | 2 cut(s) | 661, 1178 |
| ClaI | ATCGAT | 2 cut(s) | 384, 689 |
| Csp6I | GTAC | 2 cut(s) | 623, 854 |
| CviAII | CATG | 9 cut(s) | 154, 278, 295, 508, 731, 779, 791, 874, 1185 |
| CviQI | GTAC | 2 cut(s) | 623, 854 |
| DdeI | CTNAG | 4 cut(s) | 60, 90, 447, 741 |
| DpnI | GATC | 3 cut(s) | 167, 303, 679 |
| DpnII | GATC | 3 cut(s) | 165, 301, 677 |
| EaeI | YGGCCR | 2 cut(s) | 3, 1026 |
| Eam1104I | CTCTTC | 2 cut(s) | 177, 198 |
| EarI | CTCTTC | 2 cut(s) | 177, 198 |
| Ecl136II | GAGCTC | 1 cut(s) | 89 |
| Eco130I | CCWWGG | 1 cut(s) | 514 |
| Eco147I | AGGCCT | 1 cut(s) | 592 |
| Eco24I | GRGCYC | 1 cut(s) | 91 |
| Eco47I | GGWCC | 1 cut(s) | 1178 |
| Eco53kI | GAGCTC | 1 cut(s) | 89 |
| Eco57I | CTGAAG | 1 cut(s) | 101 |
| Eco72I | CACGTG | 1 cut(s) | 356 |
| Eco91I | GGTNACC | 1 cut(s) | 148 |
| EcoICRI | GAGCTC | 1 cut(s) | 89 |
| EcoO65I | GGTNACC | 1 cut(s) | 148 |
| EcoRII | CCWGG | 1 cut(s) | 1062 |
| EcoT14I | CCWWGG | 1 cut(s) | 514 |
| EcoT38I | GRGCYC | 1 cut(s) | 91 |
| ErhI | CCWWGG | 1 cut(s) | 514 |
| FaeI | CATG | 9 cut(s) | 157, 281, 298, 511, 734, 782, 794, 877, 1188 |
| FatI | CATG | 9 cut(s) | 153, 277, 294, 507, 730, 778, 790, 873, 1184 |
| FauI | CCCGC | 2 cut(s) | 10, 135 |
| FauNDI | CATATG | 1 cut(s) | 702 |
| Fnu4HI | GCNGC | 1 cut(s) | 1160 |
| FokI | GGATG | 6 cut(s) | 378, 467, 494, 512, 557, 1139 |
| FriOI | GRGCYC | 1 cut(s) | 91 |
| Fsp4HI | GCNGC | 1 cut(s) | 1160 |
| FspBI | CTAG | 5 cut(s) | 243, 321, 408, 570, 1007 |
| GluI | GCNGC | 1 cut(s) | 1160 |
| GsaI | CCCAGC | 1 cut(s) | 986 |
| HaeIII | GGCC | 5 cut(s) | 5, 592, 663, 746, 1028 |
| HapII | CCGG | 1 cut(s) | 479 |
| Hin1II | CATG | 9 cut(s) | 157, 281, 298, 511, 734, 782, 794, 877, 1188 |
| HindIII | AAGCTT | 3 cut(s) | 270, 716, 896 |
| HinfI | GANTC | 4 cut(s) | 64, 584, 691, 926 |
| HpaII | CCGG | 1 cut(s) | 479 |
| HphI | GGTGA | 4 cut(s) | 476, 548, 1025, 1109 |
| Hpy166II | GTNNAC | 1 cut(s) | 638 |
| Hpy188I | TCNGA | 6 cut(s) | 249, 448, 670, 835, 865, 931 |
| Hpy188III | TCNNGA | 3 cut(s) | 29, 479, 874 |
| Hpy8I | GTNNAC | 1 cut(s) | 638 |
| HpyAV | CCTTC | 4 cut(s) | 411, 439, 603, 1169 |
| HpyCH4III | ACNGT | 3 cut(s) | 622, 861, 1058 |
| HpyCH4IV | ACGT | 2 cut(s) | 101, 355 |
| HpyCH4V | TGCA | 3 cut(s) | 329, 369, 1130 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 56, 239, 366, 1082 |
| HpyF3I | CTNAG | 4 cut(s) | 60, 90, 447, 741 |
| HpySE526I | ACGT | 2 cut(s) | 101, 355 |
| Hsp92II | CATG | 9 cut(s) | 157, 281, 298, 511, 734, 782, 794, 877, 1188 |
| Kpn2I | TCCGGA | 1 cut(s) | 478 |
| Kzo9I | GATC | 3 cut(s) | 165, 301, 677 |
| LguI | GCTCTTC | 2 cut(s) | 177, 198 |
| LmnI | GCTCC | 4 cut(s) | 518, 712, 805, 991 |
| Lsp1109I | GCAGC | 1 cut(s) | 1171 |
| LweI | GCATC | 4 cut(s) | 46, 356, 661, 1117 |
| MaeI | CTAG | 5 cut(s) | 243, 321, 408, 570, 1007 |
| MaeII | ACGT | 2 cut(s) | 101, 355 |
| MaeIII | GTNAC | 5 cut(s) | 148, 826, 878, 1013, 1105 |
| MalI | GATC | 3 cut(s) | 167, 303, 679 |
| MboI | GATC | 3 cut(s) | 165, 301, 677 |
| MboII | GAAGA | 8 cut(s) | 194, 212, 215, 239, 515, 824, 952, 959 |
| MfeI | CAATTG | 1 cut(s) | 819 |
| MflI | RGATCY | 2 cut(s) | 165, 677 |
| MhlI | GDGCHC | 1 cut(s) | 91 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 8 cut(s) | 189, 216, 442, 552, 614, 819, 1070, 1164 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 1 cut(s) | 578 |
| MmeI | TCCRAC | 2 cut(s) | 157, 511 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroI | TCCGGA | 1 cut(s) | 478 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 9 cut(s) | 219, 252, 266, 380, 575, 684, 891, 1019, 1240 |
| MslI | CAYNNNNRTG | 2 cut(s) | 795, 1140 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 740 |
| MspI | CCGG | 1 cut(s) | 479 |
| MspR9I | CCNGG | 1 cut(s) | 1064 |
| MunI | CAATTG | 1 cut(s) | 819 |
| MvaI | CCWGG | 1 cut(s) | 1064 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 56, 239, 366, 1082 |
| NdeI | CATATG | 1 cut(s) | 702 |
| NdeII | GATC | 3 cut(s) | 165, 301, 677 |
| NlaIII | CATG | 9 cut(s) | 157, 281, 298, 511, 734, 782, 794, 877, 1188 |
| NlaIV | GGNNCC | 3 cut(s) | 167, 351, 708 |
| NmuCI | GTSAC | 3 cut(s) | 826, 1013, 1105 |
| NspI | RCATGY | 2 cut(s) | 782, 1188 |
| PagI | TCATGA | 1 cut(s) | 873 |
| PceI | AGGCCT | 1 cut(s) | 592 |
| PciI | ACATGT | 1 cut(s) | 778 |
| PciSI | GCTCTTC | 2 cut(s) | 177, 198 |
| PfeI | GAWTC | 3 cut(s) | 64, 691, 926 |
| PkrI | GCNGC | 1 cut(s) | 1161 |
| PleI | GAGTC | 1 cut(s) | 578 |
| PmaCI | CACGTG | 1 cut(s) | 356 |
| PmlI | CACGTG | 1 cut(s) | 356 |
| PpsI | GAGTC | 1 cut(s) | 578 |
| Ppu21I | YACGTR | 1 cut(s) | 356 |
| PscI | ACATGT | 1 cut(s) | 778 |
| PsiI | TTATAA | 2 cut(s) | 473, 849 |
| Psp124BI | GAGCTC | 1 cut(s) | 91 |
| Psp6I | CCWGG | 1 cut(s) | 1062 |
| PspCI | CACGTG | 1 cut(s) | 356 |
| PspEI | GGTNACC | 1 cut(s) | 148 |
| PspFI | CCCAGC | 1 cut(s) | 982 |
| PspGI | CCWGG | 1 cut(s) | 1062 |
| PspN4I | GGNNCC | 3 cut(s) | 167, 351, 708 |
| PspPI | GGNCC | 2 cut(s) | 661, 1178 |
| PsuI | RGATCY | 2 cut(s) | 165, 677 |
| PvuII | CAGCTG | 1 cut(s) | 740 |
| RsaI | GTAC | 2 cut(s) | 624, 855 |
| RsaNI | GTAC | 2 cut(s) | 623, 854 |
| RseI | CAYNNNNRTG | 2 cut(s) | 795, 1140 |
| SacI | GAGCTC | 1 cut(s) | 91 |
| SapI | GCTCTTC | 2 cut(s) | 177, 198 |
| SaqAI | TTAA | 9 cut(s) | 219, 252, 266, 380, 575, 684, 891, 1019, 1240 |
| SatI | GCNGC | 1 cut(s) | 1160 |
| Sau3AI | GATC | 3 cut(s) | 165, 301, 677 |
| Sau96I | GGNCC | 2 cut(s) | 661, 1178 |
| SchI | GAGTC | 1 cut(s) | 578 |
| ScrFI | CCNGG | 1 cut(s) | 1064 |
| SduI | GDGCHC | 1 cut(s) | 91 |
| SfaNI | GCATC | 4 cut(s) | 46, 356, 661, 1117 |
| SinI | GGWCC | 1 cut(s) | 1178 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 795, 1140 |
| SmlI | CTYRAG | 1 cut(s) | 586 |
| SmoI | CTYRAG | 1 cut(s) | 586 |
| SpeI | ACTAGT | 1 cut(s) | 407 |
| Sse9I | AATT | 8 cut(s) | 189, 216, 442, 552, 614, 819, 1070, 1164 |
| SseBI | AGGCCT | 1 cut(s) | 592 |
| SsiI | CCGC | 4 cut(s) | 17, 128, 360, 1146 |
| SspMI | CTAG | 5 cut(s) | 243, 321, 408, 570, 1007 |
| SstI | GAGCTC | 1 cut(s) | 91 |
| StuI | AGGCCT | 1 cut(s) | 592 |
| StyD4I | CCNGG | 1 cut(s) | 1062 |
| StyI | CCWWGG | 1 cut(s) | 514 |
| TaaI | ACNGT | 3 cut(s) | 622, 861, 1058 |
| TaiI | ACGT | 2 cut(s) | 104, 358 |
| TaqI | TCGA | 5 cut(s) | 42, 384, 582, 689, 924 |
| TasI | AATT | 8 cut(s) | 189, 216, 442, 552, 614, 819, 1070, 1164 |
| TfiI | GAWTC | 3 cut(s) | 64, 691, 926 |
| Tru1I | TTAA | 9 cut(s) | 219, 252, 266, 380, 575, 684, 891, 1019, 1240 |
| Tru9I | TTAA | 9 cut(s) | 219, 252, 266, 380, 575, 684, 891, 1019, 1240 |
| TscAI | CASTG | 6 cut(s) | 312, 633, 645, 754, 773, 1084 |
| TseFI | GTSAC | 3 cut(s) | 826, 1013, 1105 |
| TseI | GCWGC | 1 cut(s) | 1159 |
| Tsp45I | GTSAC | 3 cut(s) | 826, 1013, 1105 |
| TspDTI | ATGAA | 6 cut(s) | 213, 450, 516, 524, 719, 924 |
| TspRI | CASTG | 6 cut(s) | 312, 633, 645, 754, 773, 1084 |
| VpaK11BI | GGWCC | 1 cut(s) | 1178 |
| XapI | RAATTY | 1 cut(s) | 1070 |
| XceI | RCATGY | 2 cut(s) | 782, 1188 |
| XspI | CTAG | 5 cut(s) | 243, 321, 408, 570, 1007 |