Cleavage and polyadenylation specificity factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G23880 |
| fragaria_vesca | FvH4_5g14450 FvH4_7g29660 FvH4_7g29660 |
| malus_domestica | MD01G1203600.v1.1 MD07G1272900.v1.1 |
| prunus_persica | Prupe.2G296200_v2.0.a1 Prupe.2G296200_v2.0.a1 |
| pyrus_communis | pycom01g21270 pycom01g21280 pycom07g24930 |
| rosa_chinensis | RchiOBHm_Chr1g0377671 RchiOBHm_Chr1g0377681 RchiOBHm_Chr1g0379161 RchiOBHm_Chr1g0379331 |
| rosa_laevigata | RLG00000026506 RLG00000026773 |
| rosa_multiflora | Rmu_sc0002832.1_g000015 |
| rosa_roxburghii | Rroxscaffold_4G00281130 |
| rosa_rugosa | Rorug01G0404200 Rorug01G0404300 |
| rosa_samantha | Rh1AG428300 Rh1BG381000 Rh1CG000300 Rh1CG395000 Rh1DG412000 |
| rosa_wichuraiana | Rw1G037040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 3 cut(s) | 58, 73, 95 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 124, 156 |
| AluBI | AGCT | 2 cut(s) | 38, 136 |
| AluI | AGCT | 2 cut(s) | 38, 136 |
| AoxI | GGCC | 1 cut(s) | 42 |
| BbvCI | CCTCAGC | 1 cut(s) | 39 |
| Bpu10I | CCTNAGC | 1 cut(s) | 39 |
| BseMII | CTCAG | 1 cut(s) | 30 |
| BshFI | GGCC | 1 cut(s) | 44 |
| BsnI | GGCC | 1 cut(s) | 44 |
| BspANI | GGCC | 1 cut(s) | 44 |
| BspCNI | CTCAG | 1 cut(s) | 31 |
| BspHI | TCATGA | 1 cut(s) | 111 |
| Bst4CI | ACNGT | 1 cut(s) | 99 |
| BstDEI | CTNAG | 1 cut(s) | 39 |
| BsuRI | GGCC | 1 cut(s) | 44 |
| BtsI | GCAGTG | 1 cut(s) | 64 |
| BtsIMutI | CAGTG | 2 cut(s) | 45, 64 |
| CciI | TCATGA | 1 cut(s) | 111 |
| CviAII | CATG | 3 cut(s) | 29, 89, 112 |
| CviJI | RGCY | 5 cut(s) | 5, 38, 44, 109, 136 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 38, 44, 109, 136 |
| DdeI | CTNAG | 1 cut(s) | 39 |
| FaeI | CATG | 3 cut(s) | 32, 92, 115 |
| FaiI | YATR | 5 cut(s) | 30, 78, 90, 113, 152 |
| FatI | CATG | 3 cut(s) | 28, 88, 111 |
| FspEI | CC | 8 cut(s) | 8, 15, 26, 58, 91, 115, 115, 123 |
| HaeIII | GGCC | 1 cut(s) | 44 |
| Hin1II | CATG | 3 cut(s) | 32, 92, 115 |
| HindIII | AAGCTT | 1 cut(s) | 134 |
| HinfI | GANTC | 2 cut(s) | 123, 145 |
| Hpy188I | TCNGA | 1 cut(s) | 103 |
| Hpy188III | TCNNGA | 1 cut(s) | 112 |
| HpyCH4III | ACNGT | 1 cut(s) | 99 |
| HpyF3I | CTNAG | 1 cut(s) | 39 |
| Hsp92II | CATG | 3 cut(s) | 32, 92, 115 |
| MaeIII | GTNAC | 1 cut(s) | 116 |
| MnlI | CCTC | 2 cut(s) | 34, 99 |
| MspA1I | CMGCKG | 1 cut(s) | 38 |
| NlaIII | CATG | 3 cut(s) | 32, 92, 115 |
| PagI | TCATGA | 1 cut(s) | 111 |
| PfeI | GAWTC | 2 cut(s) | 123, 145 |
| PvuII | CAGCTG | 1 cut(s) | 38 |
| SetI | ASST | 2 cut(s) | 40, 138 |
| SgeI | CNNG | 6 cut(s) | 41, 82, 101, 115, 124, 149 |
| SspI | AATATT | 1 cut(s) | 53 |
| TaaI | ACNGT | 1 cut(s) | 99 |
| TaqI | TCGA | 1 cut(s) | 143 |
| TfiI | GAWTC | 2 cut(s) | 123, 145 |
| TscAI | CASTG | 2 cut(s) | 52, 71 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 2 cut(s) | 52, 71 |