Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006213

Physical Location & Seq

Genomic Coordinates Forward (+)

64469513 .. 64471439

Gene Structure 1927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60111

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGAACTTCGGTTCAGGTAACGCCGCTGTGCGGAGTCTACAACGAGAATCCACTCTCTTATTTGGTCTCCATCGACGGCTTCAACTTCCTCATCGACTGTGGCTGGAACGACCACTTCGACCCCTCCCTCCTCCAACCTCTCTCCAGAGTCGCTTCCACCGTAGACGCCGTCCTACTGTCCCATCCCGACACACTCCACCTCGGCGCGCTTCCCTACGCCGCGAAACACCTCGGCCTCGCCGCTCCGGTCTTCTCCACCGAGCCGGTTTACCGGCTAGGGCTTCTCACTATGTACGATCAGTACCTCTCCCGCAAGCAAGTTTCGGAGTTCGATTTGTTTACGCTGGATGATATTGATTCTGCTTTCCAAAATGTCACCAGGCTGACCAATGCTCAGCACCATCATCTTACTGGCAAAGGAGAGGGAATTGTGATCTCGCCTCATGTGGCTGGGCATCTATTGGGAGGTACTGTGTGGAAGATAACAAAGGATGGAGAGGATGTTATATATGCTGTGGACTTCAACCATCGAAAAGAAAAGCATTTGAATGGAATTAATCAGTCATCGTTTGTGCGGCCTGCTGTTCTAATAACAGATGCCTATAATGCTTTGAACAATCAGCCTTATAGACGCCAGAAGGACAGAGAATTTACAGAGACTATAAAGAAGACTCTGCGATCTCAAGGAAATGTTTTACTACCTGTTGATACTGCTGGGCGAGTTTTGGAACTTCTTCAAATATTGGAATCGTGTTGGAACGAGGAAAGTTTGCCCTTCCCCATCTATTTCCTAACGTATGTTGCTTCTAGCACAATTGATTATGTCAAAAGTTTCCTTGAGTGGATGAGTGATGCAATGGCAAAGTCCTTTGAGACAACACGAGACAATGCTTTTATTTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

302

Amino Acids

33.93

Weight (kDa)

5.62

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	19 - 171	3.8e-08	Metallo-beta-lactamase superfamily
Lactamase_B_6	PF16661	22 - 195	2.8e-54	Metallo-beta-lactamase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23880
fragaria_vesca	FvH4_5g14450 FvH4_7g29660 FvH4_7g29660
malus_domestica	MD01G1203600.v1.1 MD07G1272900.v1.1
prunus_persica	Prupe.2G296200_v2.0.a1 Prupe.2G296200_v2.0.a1
pyrus_communis	pycom01g21270 pycom01g21280 pycom07g24930
rosa_chinensis	RchiOBHm_Chr1g0377671 RchiOBHm_Chr1g0377681 RchiOBHm_Chr1g0379161 RchiOBHm_Chr1g0379331
rosa_laevigata	RLG00000026506 RLG00000026773
rosa_multiflora	Rmu_sc0002832.1_g000015
rosa_roxburghii	Rroxscaffold_4G00281130
rosa_rugosa	Rorug01G0404200 Rorug01G0404300
rosa_samantha	Rh1AG428300 Rh1BG381000 Rh1CG000300 Rh1CG395000 Rh1DG412000
rosa_wichuraiana	Rw1G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	245
AccI	GTMKAC	2 cut(s)	39, 165
AccII	CGCG	2 cut(s)	209, 224
AciI	CCGC	6 cut(s)	26, 33, 222, 243, 313, 577
AcsI	RAATTY	1 cut(s)	650
AcyI	GRCGYC	2 cut(s)	168, 634
AfaI	GTAC	3 cut(s)	296, 305, 472
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	6 cut(s)	85, 526, 550, 616, 740, 904
AjnI	CCWGG	1 cut(s)	380
AloI	GAACNNNNNNTCC	1 cut(s)	29
Alw26I	GTCTC	4 cut(s)	73, 653, 869, 879
AoxI	GGCC	2 cut(s)	235, 578
ApoI	RAATTY	1 cut(s)	650
AseI	ATTAAT	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	209, 211
AsuHPI	GGTGA	1 cut(s)	370
BauI	CACGAG	1 cut(s)	882
BbsI	GAAGAC	2 cut(s)	244, 677
BccI	CCATC	6 cut(s)	80, 192, 411, 488, 537, 791
BceAI	ACGGC	2 cut(s)	94, 155
BciT130I	CCWGG	1 cut(s)	382
BcoDI	GTCTC	4 cut(s)	73, 653, 869, 879
BfaI	CTAG	2 cut(s)	278, 810
BisI	GCNGC	4 cut(s)	26, 222, 243, 578
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	4 cut(s)	27, 223, 244, 579
Bme1390I	CCNGG	1 cut(s)	382
BmrFI	CCNGG	1 cut(s)	382
BmsI	GCATC	3 cut(s)	466, 589, 844
BpiI	GAAGAC	2 cut(s)	244, 677
BpmI	CTGGAG	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	2 cut(s)	669, 860
BsaHI	GRCGYC	2 cut(s)	168, 634
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	202, 232
BsaWI	WCCGGW	1 cut(s)	247
BsaXI	ACNNNNNCTCC	4 cut(s)	459, 489, 489, 519
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse118I	RCCGGY	2 cut(s)	265, 273
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	2 cut(s)	202, 232
BseGI	GGATG	5 cut(s)	184, 355, 499, 508, 852
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	418
BsePI	GCGCGC	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	122
BseYI	CCCAGC	2 cut(s)	452, 716
Bsh1236I	CGCG	2 cut(s)	209, 224
BshFI	GGCC	2 cut(s)	237, 580
BsiSI	CCGG	3 cut(s)	248, 266, 274
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	4 cut(s)	73, 653, 869, 879
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	237, 580
Bso31I	GGTCTC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	298, 435, 680
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	6 cut(s)	26, 33, 222, 243, 313, 577
BspANI	GGCC	2 cut(s)	237, 580
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	2 cut(s)	209, 224
BspTNI	GGTCTC	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	864
BsrFI	RCCGGY	2 cut(s)	265, 273
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	2 cut(s)	265, 273
BssECI	CCNNGG	2 cut(s)	202, 232
BssHII	GCGCGC	1 cut(s)	207
BssMI	GATC	3 cut(s)	298, 435, 680
BssNI	GRCGYC	2 cut(s)	168, 634
BssSI	CACGAG	1 cut(s)	882
Bst2BI	CACGAG	1 cut(s)	882
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	4 cut(s)	101, 163, 180, 475
BstACI	GRCGYC	2 cut(s)	168, 634
BstC8I	GCNNGC	3 cut(s)	209, 317, 582
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	5 cut(s)	184, 355, 499, 508, 852
BstFNI	CGCG	2 cut(s)	209, 224
BstHHI	GCGC	2 cut(s)	209, 211
BstKTI	GATC	3 cut(s)	301, 438, 683
BstMAI	GTCTC	4 cut(s)	73, 653, 869, 879
BstMBI	GATC	3 cut(s)	298, 435, 680
BstMWI	GCNNNNNNNGC	1 cut(s)	608
BstNI	CCWGG	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	380
BstUI	CGCG	2 cut(s)	209, 224
BstV2I	GAAGAC	2 cut(s)	244, 677
BsuRI	GGCC	2 cut(s)	237, 580
BtsCI	GGATG	5 cut(s)	184, 355, 499, 508, 852
Cac8I	GCNNGC	3 cut(s)	209, 317, 582
CfoI	GCGC	2 cut(s)	209, 211
Cfr10I	RCCGGY	2 cut(s)	265, 273
CseI	GACGC	2 cut(s)	176, 642
Csp6I	GTAC	3 cut(s)	295, 304, 471
CviAII	CATG	1 cut(s)	446
CviQI	GTAC	3 cut(s)	295, 304, 471
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	3 cut(s)	300, 437, 682
DpnII	GATC	3 cut(s)	298, 435, 680
Eco31I	GGTCTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	380
FaeI	CATG	1 cut(s)	449
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	1 cut(s)	445
FauI	CCCGC	1 cut(s)	320
FblI	GTMKAC	2 cut(s)	39, 165
Fnu4HI	GCNGC	4 cut(s)	26, 222, 243, 578
FokI	GGATG	5 cut(s)	171, 362, 506, 515, 859
Fsp4HI	GCNGC	4 cut(s)	26, 222, 243, 578
FspBI	CTAG	2 cut(s)	278, 810
GlaI	GCGC	2 cut(s)	208, 210
GluI	GCNGC	4 cut(s)	26, 222, 243, 578
GsaI	CCCAGC	2 cut(s)	456, 720
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	237, 580
HapII	CCGG	3 cut(s)	248, 266, 274
HgaI	GACGC	2 cut(s)	176, 642
HhaI	GCGC	2 cut(s)	209, 211
Hin1I	GRCGYC	2 cut(s)	168, 634
Hin1II	CATG	1 cut(s)	449
Hin6I	GCGC	2 cut(s)	207, 209
HinP1I	GCGC	2 cut(s)	207, 209
HinfI	GANTC	6 cut(s)	36, 49, 150, 359, 673, 749
HpaII	CCGG	3 cut(s)	248, 266, 274
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	5 cut(s)	40, 166, 271, 342, 520
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	2 cut(s)	147, 188
Hpy8I	GTNNAC	5 cut(s)	40, 166, 271, 342, 520
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	634, 787
HpyCH4III	ACNGT	4 cut(s)	101, 163, 180, 475
HpyCH4IV	ACGT	1 cut(s)	797
HpyCH4V	TGCA	1 cut(s)	857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	608
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	1 cut(s)	797
Hsp92I	GRCGYC	2 cut(s)	168, 634
Hsp92II	CATG	1 cut(s)	449
HspAI	GCGC	2 cut(s)	207, 209
Kzo9I	GATC	3 cut(s)	298, 435, 680
LmnI	GCTCC	1 cut(s)	250
LweI	GCATC	3 cut(s)	466, 589, 844
MaeI	CTAG	2 cut(s)	278, 810
MaeII	ACGT	1 cut(s)	797
MaeIII	GTNAC	2 cut(s)	19, 376
MalI	GATC	3 cut(s)	300, 437, 682
MbiI	CCGCTC	1 cut(s)	245
MboI	GATC	3 cut(s)	298, 435, 680
MboII	GAAGA	4 cut(s)	244, 493, 682, 728
MfeI	CAATTG	1 cut(s)	816
MluCI	AATT	4 cut(s)	429, 555, 650, 816
MlyI	GAGTC	3 cut(s)	45, 159, 667
MmeI	TCCRAC	2 cut(s)	160, 737
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	3 cut(s)	248, 266, 274
MspR9I	CCNGG	1 cut(s)	382
MunI	CAATTG	1 cut(s)	816
MvaI	CCWGG	1 cut(s)	382
MvnI	CGCG	2 cut(s)	209, 224
MwoI	GCNNNNNNNGC	1 cut(s)	608
NdeII	GATC	3 cut(s)	298, 435, 680
NlaIII	CATG	1 cut(s)	449
NmeAIII	GCCGAG	2 cut(s)	183, 213
NmuCI	GTSAC	1 cut(s)	376
PauI	GCGCGC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 159
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	49, 359, 749
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	27, 223, 244, 579
PleI	GAGTC	3 cut(s)	44, 158, 667
PpsI	GAGTC	3 cut(s)	44, 158, 667
PshBI	ATTAAT	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	380
PspFI	CCCAGC	2 cut(s)	452, 716
PspGI	CCWGG	1 cut(s)	380
PsyI	GACNNNGTC	1 cut(s)	170
PteI	GCGCGC	1 cut(s)	207
RsaI	GTAC	3 cut(s)	296, 305, 472
RsaNI	GTAC	3 cut(s)	295, 304, 471
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	4 cut(s)	26, 222, 243, 578
Sau3AI	GATC	3 cut(s)	298, 435, 680
SchI	GAGTC	3 cut(s)	45, 159, 667
ScrFI	CCNGG	1 cut(s)	382
SetI	ASST	8 cut(s)	21, 142, 204, 234, 309, 472, 706, 800
SfaNI	GCATC	3 cut(s)	466, 589, 844
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	2 cut(s)	684, 839
SmoI	CTYRAG	2 cut(s)	684, 839
Sse9I	AATT	4 cut(s)	429, 555, 650, 816
SsiI	CCGC	6 cut(s)	26, 33, 222, 243, 313, 577
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	2 cut(s)	278, 810
StyD4I	CCNGG	1 cut(s)	380
TaaI	ACNGT	4 cut(s)	101, 163, 180, 475
TaiI	ACGT	1 cut(s)	800
TaqI	TCGA	5 cut(s)	75, 96, 120, 333, 532
TasI	AATT	4 cut(s)	429, 555, 650, 816
TauI	GCSGC	4 cut(s)	28, 224, 245, 580
TfiI	GAWTC	3 cut(s)	49, 359, 749
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TseFI	GTSAC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	170
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	1 cut(s)	650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XmiI	GTMKAC	2 cut(s)	39, 165
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	2 cut(s)	278, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.