Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006213

Physical Location & Seq

Genomic Coordinates Forward (+)

62920428 .. 62927173

Gene Structure 6746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG412000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2223 bp

ATGGGAACTTCGGTTCAGGTAACGCCGCTGTGCGGAGTCTACAACGAGAATCCACTCTCCTATTTGGTCTCCATCGACGGCTTCAACTTCCTCATCGACTGTGGCTGGAACGACCACTTCGACCCCTCCCTCCTCCAACCTCTCTCCAGAGTCGCTTCCACCGTAGACGCCGTCCTACTGTCCCACCCCGACACACTCCACCTCGGCGCGCTTCCCTACGCCGCGAAACACCTCGGCCTCGCCGCTCCGGTCTTCTCCACCGAGCCGGTTTACCGGCTAGGGCTTCTCACTATGTACGATCAGTACCTCTCCCGCAAGCAAGTTTCGGAGTTCGATTTGTTTACGCTGGATGATATTGATTCTGCTTTCCAAAATGTCACCAGGCTGACCAATGCTCAGCATCATCATCTTACTGGCAAAGGAGAGGGAATTGTGATCTCGCCTCATGTGGCTGGGCATCTATTGGGAGGTACTGTGTGGAAGATAACAAAGGATGGAGAGGATGTTATATATGCTGTGGACTTCAACCATCGAAAAGAAAAGCATTTGAATGGAATTAATCAGTCATCGTTTGTGCGGCCTGCTGTTCTAATAACAGATGCCTATAATGCTTTGAACAATCAGCCTTATAGACGCCAGAAGGACCGAGAATTTACAGAGACTATAAAGAAGACTCTACGATCTCAAGGAAATGTTTTACTACCTGTTGATACTGCTGGGCGAGTTTTGGAACTTCTTCAAATATTGGAATCGTGTTGGAACGAGGAAAGTTTGCCCTTCCCCATTTATTTCCTAACGTATGTTGCTTCTAGCACAATTGATTATGTCAAAAGTTTCCTTGAGTGGATGAGTGATGCAATGGCAAAGTCCTTTGAGACAACACGAGACAATGCTTTTATTTTGAAGCGTGTGAAACTTCTTGTTAACAAGAGCGAACTTGAAAATGCTCCGGAAGGCCCAAAGGTTGTTTTAGCATCCATGGCCAGTTTGGAAGCGGGTTTTTCTCACGATATATTTGTCGAATGGGCAACTGATGCTAAGAATCTTGTGCTTTTTACAGAACGAGCTCAGTTTGGCACGTTAGCTCGTATGCTTCAGGCAGACCCGCCTCCAAAAGCTGTCAAGGTTACCATGTCCAAGAGGATCCCTTTGGTTGGAGAAGAGCTAATCGCTTATGAAGAAGAGCAGAACAGAATTAAAAAGGAAGAAGCTCTAAAGGCTAGTCTGATTAAAGAGGAGGAGTTAAAAGCTTCTCATGGGGCTGATGTCAGCATGAGTGATCCACTGGTTATTGATACTAGCAATGCAAAGTCTTTGCCAGATGCAGTGGTTCCACGTGGTGGTGGATGCAGAGACATTTTAATCGATGGATTTACTCCTCCTTCTACTAGTGTTGCCCCTATGTTTCCCTTCTATGAAAATAATTCTGAGTGGGATGACTTTGGTGAAGTTATAAATCCGGACGATTATGTTATCAAGGATGAAGACATGAACCAAGGAGCAATGCTTGTTGGAGGTGATATGGATGGAAAAATTGACGAAGCCTCTGCTAGTTTAATACTCGACTCAAGGCCTTCGAAAGTTGTGTCAAGTGAATTGACTGTACCAGTGAAGTGTTCACTGATATATATGGACTTTGAGGGTCGTTCTGATGCGAGATCTGTTAAATCGATTCTTTCGCATATGGCTCCTCTAAAGCTTGTTTTGGTTCATGGAACAGCTGAGGCCACTGAACATTTGAAGCAACACTGCTTGAAACATGTTTGCCCTCATGTATATGCTCCTCAACTTGAAGAAACAATTGATGTCACATCTGATTTATGTGCTTATAAGGTACAACTGTCCGAGAAGCTCATGAGTAACATAATCTTTAAGAAGCTTGGAGAGAATGAAATAGCTTGGTTCGATTCTGATGTAGGGAAGACTGAAGACGAAATGCTGACTTTACTACCCTGCTCAACCCCAGCTCCACCACACAAACCAATCCTAGTTGGTGACTTAAAAATGGCCGATTTCAAGCAATTTCTTGCTGATAACGGTGTCCAGGTTGAATTTGCCAGTGGGGCTTTGCGATGTGGTGAATATGTGACAATACGCAAGGTTGGGGATGCAAGCCATAAGGGTGGCGGTGCTGGTTCGCAGCAAATTGTGATTGAAGGTCCTGCATGTGAGGATTATTACAAAATACGAGAATATCTCTATTCGCACTTTTATCTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

740

Amino Acids

82.04

Weight (kDa)

5.13

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	19 - 149	1.8e-07	Metallo-beta-lactamase superfamily
Lactamase_B_6	PF16661	22 - 195	2e-53	Metallo-beta-lactamase superfamily domain
Beta-Casp	PF10996	242 - 365	4e-23	Beta-Casp domain
RMMBL	PF07521	535 - 585	3e-10	Zn-dependent metallo-hydrolase RNA specificity domain
CPSF100_C	PF13299	645 - 737	7.6e-19	Cleavage and polyadenylation factor 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23880
fragaria_vesca	FvH4_5g14450 FvH4_7g29660 FvH4_7g29660
malus_domestica	MD01G1203600.v1.1 MD07G1272900.v1.1
prunus_persica	Prupe.2G296200_v2.0.a1 Prupe.2G296200_v2.0.a1
pyrus_communis	pycom01g21270 pycom01g21280 pycom07g24930
rosa_chinensis	RchiOBHm_Chr1g0377671 RchiOBHm_Chr1g0377681 RchiOBHm_Chr1g0379161 RchiOBHm_Chr1g0379331
rosa_laevigata	RLG00000026506 RLG00000026773
rosa_multiflora	Rmu_sc0002832.1_g000015
rosa_roxburghii	Rroxscaffold_4G00281130
rosa_rugosa	Rorug01G0404200 Rorug01G0404300
rosa_samantha	Rh1AG428300 Rh1BG381000 Rh1CG000300 Rh1CG395000 Rh1DG412000
rosa_wichuraiana	Rw1G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1454, 1830
AccB7I	CCANNNNNTGG	1 cut(s)	1340
AccBSI	CCGCTC	1 cut(s)	245
AccI	GTMKAC	2 cut(s)	39, 165
AccII	CGCG	2 cut(s)	209, 224
AccIII	TCCGGA	2 cut(s)	949, 1459
AciI	CCGC	9 cut(s)	26, 33, 222, 243, 313, 577, 995, 1106, 2127
AclWI	GGATC	3 cut(s)	1138, 1151, 1274
AcoI	YGGCCR	2 cut(s)	981, 2007
AcsI	RAATTY	2 cut(s)	650, 2051
AcuI	CTGAAG	2 cut(s)	1079, 1947
AcvI	CACGTG	1 cut(s)	1337
AcyI	GRCGYC	2 cut(s)	168, 634
AdeI	CACNNNGTG	1 cut(s)	1340
AfaI	GTAC	5 cut(s)	296, 305, 472, 1605, 1836
AfiI	CCNNNNNNNGG	3 cut(s)	32, 1154, 1340
AflIII	ACRYGT	1 cut(s)	1759
AhlI	ACTAGT	1 cut(s)	1388
AjnI	CCWGG	2 cut(s)	380, 2043
AloI	GAACNNNNNNTCC	1 cut(s)	29
Alw21I	GWGCWC	1 cut(s)	1069
Alw26I	GTCTC	5 cut(s)	73, 653, 869, 879, 1347
AlwI	GGATC	3 cut(s)	1138, 1151, 1274
Aor13HI	TCCGGA	2 cut(s)	949, 1459
AoxI	GGCC	7 cut(s)	235, 578, 955, 981, 1571, 1725, 2007
ApeKI	GCWGC	1 cut(s)	2140
ApoI	RAATTY	2 cut(s)	650, 2051
ArsI	GACNNNNNNTTYG	2 cut(s)	1571, 1603
AseI	ATTAAT	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	209, 211
AspS9I	GGNCC	3 cut(s)	643, 956, 2159
AsuHPI	GGTGA	5 cut(s)	370, 1457, 1529, 2006, 2090
AsuII	TTCGAA	1 cut(s)	1577
AvaII	GGWCC	2 cut(s)	643, 2159
BaeI	ACNNNNGTAYC	2 cut(s)	1826, 1859
BalI	TGGCCA	1 cut(s)	983
BamHI	GGATCC	1 cut(s)	1143
BanII	GRGCYC	1 cut(s)	1069
BauI	CACGAG	1 cut(s)	882
BbrPI	CACGTG	1 cut(s)	1337
BbsI	GAAGAC	5 cut(s)	244, 677, 1491, 1928, 1935
Bbv12I	GWGCWC	1 cut(s)	1069
BbvCI	CCTCAGC	1 cut(s)	1722
BbvI	GCAGC	1 cut(s)	2152
BccI	CCATC	5 cut(s)	80, 488, 537, 1361, 1520
BceAI	ACGGC	2 cut(s)	94, 155
BcgI	CGANNNNNNTGC	2 cut(s)	1529, 1563
BciT130I	CCWGG	2 cut(s)	382, 2045
BcoDI	GTCTC	5 cut(s)	73, 653, 869, 879, 1347
BcuI	ACTAGT	1 cut(s)	1388
BfaI	CTAG	7 cut(s)	278, 810, 1221, 1299, 1389, 1551, 1988
BglI	GCCNNNNNGGC	1 cut(s)	2063
BglII	AGATCT	1 cut(s)	1658
BisI	GCNGC	5 cut(s)	26, 222, 243, 578, 2141
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	5 cut(s)	27, 223, 244, 579, 2142
Bme1390I	CCNGG	2 cut(s)	382, 2045
Bme18I	GGWCC	2 cut(s)	643, 2159
BmgT120I	GGNCC	3 cut(s)	643, 956, 2159
BmiI	GGNNCC	3 cut(s)	1145, 1332, 1689
BmrFI	CCNGG	2 cut(s)	382, 2045
BpiI	GAAGAC	5 cut(s)	244, 677, 1491, 1928, 1935
BplI	GAGNNNNNCTC	2 cut(s)	2181, 2213
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	1722
Bpu1102I	GCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	1577
BpuEI	CTTGAG	3 cut(s)	669, 860, 1552
Bsa29I	ATCGAT	2 cut(s)	1365, 1670
BsaAI	YACGTR	1 cut(s)	1337
BsaHI	GRCGYC	2 cut(s)	168, 634
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	4 cut(s)	202, 232, 978, 1495
BsaWI	WCCGGW	3 cut(s)	247, 949, 1459
BsaXI	ACNNNNNCTCC	6 cut(s)	459, 489, 489, 519, 1951, 1981
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 1154, 1340
Bse118I	RCCGGY	2 cut(s)	265, 273
Bse1I	ACTGG	5 cut(s)	418, 984, 1290, 1607, 2058
Bse3DI	GCAATG	3 cut(s)	864, 1309, 1509
BseAI	TCCGGA	2 cut(s)	949, 1459
BseBI	CCWGG	2 cut(s)	382, 2045
BseCI	ATCGAT	2 cut(s)	1365, 1670
BseDI	CCNNGG	4 cut(s)	202, 232, 978, 1495
BseLI	CCNNNNNNNGG	3 cut(s)	32, 1154, 1340
BseMI	GCAATG	3 cut(s)	864, 1309, 1509
BseMII	CTCAG	4 cut(s)	410, 1082, 1419, 1713
BseNI	ACTGG	5 cut(s)	418, 984, 1290, 1607, 2058
BsePI	GCGCGC	1 cut(s)	207
BseRI	GAGGAG	6 cut(s)	122, 1250, 1253, 1368, 1680, 1773
BseXI	GCAGC	1 cut(s)	2152
BseYI	CCCAGC	3 cut(s)	452, 716, 1963
Bsh1236I	CGCG	2 cut(s)	209, 224
BshFI	GGCC	7 cut(s)	237, 580, 957, 983, 1573, 1727, 2009
BshVI	ATCGAT	2 cut(s)	1365, 1670
BsiHKAI	GWGCWC	1 cut(s)	1069
BsiSI	CCGG	5 cut(s)	248, 266, 274, 950, 1460
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	3 cut(s)	32, 1154, 1340
BsmAI	GTCTC	5 cut(s)	73, 653, 869, 879, 1347
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	7 cut(s)	237, 580, 957, 983, 1573, 1727, 2009
Bso31I	GGTCTC	1 cut(s)	73
Bsp119I	TTCGAA	1 cut(s)	1577
Bsp1286I	GDGCHC	1 cut(s)	1069
Bsp13I	TCCGGA	2 cut(s)	949, 1459
Bsp143I	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1658
Bsp1720I	GCTNAGC	1 cut(s)	396
Bsp19I	CCATGG	1 cut(s)	978
BspACI	CCGC	9 cut(s)	26, 33, 222, 243, 313, 577, 995, 1106, 2127
BspANI	GGCC	7 cut(s)	237, 580, 957, 983, 1573, 1727, 2009
BspCNI	CTCAG	4 cut(s)	409, 1081, 1420, 1714
BspDI	ATCGAT	2 cut(s)	1365, 1670
BspEI	TCCGGA	2 cut(s)	949, 1459
BspFNI	CGCG	2 cut(s)	209, 224
BspHI	TCATGA	1 cut(s)	1854
BspLI	GGNNCC	3 cut(s)	1145, 1332, 1689
BspPI	GGATC	3 cut(s)	1138, 1151, 1274
BspQI	GCTCTTC	2 cut(s)	1155, 1176
BspT104I	TTCGAA	1 cut(s)	1577
BspTNI	GGTCTC	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	245
BsrDI	GCAATG	3 cut(s)	864, 1309, 1509
BsrFI	RCCGGY	2 cut(s)	265, 273
BsrI	ACTGG	5 cut(s)	418, 984, 1290, 1607, 2058
BssAI	RCCGGY	2 cut(s)	265, 273
BssECI	CCNNGG	4 cut(s)	202, 232, 978, 1495
BssHII	GCGCGC	1 cut(s)	207
BssMI	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1658
BssNI	GRCGYC	2 cut(s)	168, 634
BssSI	CACGAG	1 cut(s)	882
BssT1I	CCWWGG	2 cut(s)	978, 1495
Bst2BI	CACGAG	1 cut(s)	882
Bst2UI	CCWGG	2 cut(s)	382, 2045
Bst4CI	ACNGT	7 cut(s)	101, 163, 180, 475, 1603, 1842, 2039
Bst6I	CTCTTC	2 cut(s)	1155, 1176
BstACI	GRCGYC	2 cut(s)	168, 634
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstBAI	YACGTR	1 cut(s)	1337
BstBI	TTCGAA	1 cut(s)	1577
BstC8I	GCNNGC	4 cut(s)	209, 317, 582, 2113
BstDEI	CTNAG	5 cut(s)	396, 1038, 1068, 1428, 1722
BstDSI	CCRYGG	1 cut(s)	978
BstEII	GGTNACC	1 cut(s)	1126
BstFNI	CGCG	2 cut(s)	209, 224
BstHHI	GCGC	2 cut(s)	209, 211
BstKTI	GATC	6 cut(s)	301, 438, 683, 1146, 1282, 1661
BstMAI	GTCTC	5 cut(s)	73, 653, 869, 879, 1347
BstMBI	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1658
BstMWI	GCNNNNNNNGC	5 cut(s)	608, 980, 1034, 1217, 2063
BstNI	CCWGG	2 cut(s)	382, 2045
BstNSI	RCATGY	2 cut(s)	1763, 2169
BstPI	GGTNACC	1 cut(s)	1126
BstSCI	CCNGG	2 cut(s)	380, 2043
BstUI	CGCG	2 cut(s)	209, 224
BstV1I	GCAGC	1 cut(s)	2152
BstV2I	GAAGAC	5 cut(s)	244, 677, 1491, 1928, 1935
BstX2I	RGATCY	2 cut(s)	1143, 1658
BstXI	CCANNNNNNTGG	1 cut(s)	2123
BstYI	RGATCY	2 cut(s)	1143, 1658
Bsu15I	ATCGAT	2 cut(s)	1365, 1670
BsuRI	GGCC	7 cut(s)	237, 580, 957, 983, 1573, 1727, 2009
BsuTUI	ATCGAT	2 cut(s)	1365, 1670
BtgI	CCRYGG	1 cut(s)	978
BtgZI	GCGATG	1 cut(s)	2086
BtsI	GCAGTG	2 cut(s)	1332, 1747
BtsIMutI	CAGTG	7 cut(s)	1283, 1332, 1614, 1619, 1728, 1747, 2065
Cac8I	GCNNGC	4 cut(s)	209, 317, 582, 2113
CciI	TCATGA	1 cut(s)	1854
CfoI	GCGC	2 cut(s)	209, 211
Cfr10I	RCCGGY	2 cut(s)	265, 273
Cfr13I	GGNCC	3 cut(s)	643, 956, 2159
ClaI	ATCGAT	2 cut(s)	1365, 1670
CseI	GACGC	2 cut(s)	176, 642
Csp6I	GTAC	5 cut(s)	295, 304, 471, 1604, 1835
CviQI	GTAC	5 cut(s)	295, 304, 471, 1604, 1835
DdeI	CTNAG	5 cut(s)	396, 1038, 1068, 1428, 1722
DpnI	GATC	6 cut(s)	300, 437, 682, 1145, 1281, 1660
DpnII	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1658
DraIII	CACNNNGTG	1 cut(s)	1340
EaeI	YGGCCR	2 cut(s)	981, 2007
Eam1104I	CTCTTC	2 cut(s)	1155, 1176
EarI	CTCTTC	2 cut(s)	1155, 1176
Ecl136II	GAGCTC	1 cut(s)	1067
Eco130I	CCWWGG	2 cut(s)	978, 1495
Eco147I	AGGCCT	1 cut(s)	1573
Eco24I	GRGCYC	1 cut(s)	1069
Eco31I	GGTCTC	1 cut(s)	73
Eco47I	GGWCC	2 cut(s)	643, 2159
Eco53kI	GAGCTC	1 cut(s)	1067
Eco57I	CTGAAG	2 cut(s)	1079, 1947
Eco72I	CACGTG	1 cut(s)	1337
Eco91I	GGTNACC	1 cut(s)	1126
EcoICRI	GAGCTC	1 cut(s)	1067
EcoO109I	RGGNCCY	1 cut(s)	2159
EcoO65I	GGTNACC	1 cut(s)	1126
EcoRII	CCWGG	2 cut(s)	380, 2043
EcoT14I	CCWWGG	2 cut(s)	978, 1495
EcoT38I	GRGCYC	1 cut(s)	1069
ErhI	CCWWGG	2 cut(s)	978, 1495
FaqI	GGGAC	1 cut(s)	166
FauI	CCCGC	3 cut(s)	320, 988, 1113
FauNDI	CATATG	1 cut(s)	1683
FblI	GTMKAC	2 cut(s)	39, 165
Fnu4HI	GCNGC	5 cut(s)	26, 222, 243, 578, 2141
FriOI	GRGCYC	1 cut(s)	1069
Fsp4HI	GCNGC	5 cut(s)	26, 222, 243, 578, 2141
FspBI	CTAG	7 cut(s)	278, 810, 1221, 1299, 1389, 1551, 1988
GlaI	GCGC	2 cut(s)	208, 210
GluI	GCNGC	5 cut(s)	26, 222, 243, 578, 2141
GsaI	CCCAGC	3 cut(s)	456, 720, 1967
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	7 cut(s)	237, 580, 957, 983, 1573, 1727, 2009
HapII	CCGG	5 cut(s)	248, 266, 274, 950, 1460
HgaI	GACGC	2 cut(s)	176, 642
HhaI	GCGC	2 cut(s)	209, 211
Hin1I	GRCGYC	2 cut(s)	168, 634
Hin6I	GCGC	2 cut(s)	207, 209
HinP1I	GCGC	2 cut(s)	207, 209
HincII	GTYRAC	1 cut(s)	925
HindII	GTYRAC	1 cut(s)	925
HindIII	AAGCTT	3 cut(s)	1248, 1697, 1877
HpaI	GTTAAC	1 cut(s)	925
HpaII	CCGG	5 cut(s)	248, 266, 274, 950, 1460
HphI	GGTGA	5 cut(s)	370, 1457, 1529, 2006, 2090
Hpy166II	GTNNAC	7 cut(s)	40, 166, 271, 342, 520, 925, 1619
Hpy188I	TCNGA	7 cut(s)	328, 1227, 1429, 1651, 1816, 1846, 1912
Hpy188III	TCNNGA	5 cut(s)	147, 950, 1007, 1460, 1855
Hpy8I	GTNNAC	7 cut(s)	40, 166, 271, 342, 520, 925, 1619
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	7 cut(s)	634, 787, 947, 1392, 1420, 1584, 2150
HpyCH4III	ACNGT	7 cut(s)	101, 163, 180, 475, 1603, 1842, 2039
HpyCH4IV	ACGT	3 cut(s)	797, 1079, 1336
HpyCH4V	TGCA	6 cut(s)	857, 1307, 1325, 1350, 2111, 2165
HpyF10VI	GCNNNNNNNGC	5 cut(s)	608, 980, 1034, 1217, 2063
HpyF3I	CTNAG	5 cut(s)	396, 1038, 1068, 1428, 1722
HpySE526I	ACGT	3 cut(s)	797, 1079, 1336
Hsp92I	GRCGYC	2 cut(s)	168, 634
HspAI	GCGC	2 cut(s)	207, 209
Kpn2I	TCCGGA	2 cut(s)	949, 1459
KspAI	GTTAAC	1 cut(s)	925
Kzo9I	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1658
LguI	GCTCTTC	2 cut(s)	1155, 1176
LmnI	GCTCC	6 cut(s)	250, 952, 1499, 1693, 1786, 1972
Lsp1109I	GCAGC	1 cut(s)	2152
MaeI	CTAG	7 cut(s)	278, 810, 1221, 1299, 1389, 1551, 1988
MaeII	ACGT	3 cut(s)	797, 1079, 1336
MaeIII	GTNAC	7 cut(s)	19, 376, 1126, 1807, 1859, 1994, 2086
MalI	GATC	6 cut(s)	300, 437, 682, 1145, 1281, 1660
MbiI	CCGCTC	1 cut(s)	245
MboI	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1658
MfeI	CAATTG	2 cut(s)	816, 1800
MflI	RGATCY	2 cut(s)	1143, 1658
MhlI	GDGCHC	1 cut(s)	1069
MlsI	TGGCCA	1 cut(s)	983
MluNI	TGGCCA	1 cut(s)	983
MlyI	GAGTC	4 cut(s)	45, 159, 667, 1559
MmeI	TCCRAC	4 cut(s)	160, 737, 1135, 1492
Mox20I	TGGCCA	1 cut(s)	983
MroI	TCCGGA	2 cut(s)	949, 1459
MroXI	GAANNNNTTC	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	983
MslI	CAYNNNNRTG	3 cut(s)	549, 1776, 2121
Msp20I	TGGCCA	1 cut(s)	983
MspA1I	CMGCKG	2 cut(s)	28, 1721
MspI	CCGG	5 cut(s)	248, 266, 274, 950, 1460
MspR9I	CCNGG	2 cut(s)	382, 2045
MunI	CAATTG	2 cut(s)	816, 1800
MvaI	CCWGG	2 cut(s)	382, 2045
MvnI	CGCG	2 cut(s)	209, 224
MwoI	GCNNNNNNNGC	5 cut(s)	608, 980, 1034, 1217, 2063
NcoI	CCATGG	1 cut(s)	978
NdeI	CATATG	1 cut(s)	1683
NdeII	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1658
NlaIV	GGNNCC	3 cut(s)	1145, 1332, 1689
NmeAIII	GCCGAG	2 cut(s)	183, 213
NmuCI	GTSAC	4 cut(s)	376, 1807, 1994, 2086
NspI	RCATGY	2 cut(s)	1763, 2169
NspV	TTCGAA	1 cut(s)	1577
PagI	TCATGA	1 cut(s)	1854
PauI	GCGCGC	1 cut(s)	207
PceI	AGGCCT	1 cut(s)	1573
PciI	ACATGT	1 cut(s)	1759
PciSI	GCTCTTC	2 cut(s)	1155, 1176
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 159
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	6 cut(s)	49, 359, 749, 1042, 1672, 1907
PflFI	GACNNNGTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	1340
PkrI	GCNGC	5 cut(s)	27, 223, 244, 579, 2142
PleI	GAGTC	4 cut(s)	44, 158, 667, 1559
PmaCI	CACGTG	1 cut(s)	1337
PmlI	CACGTG	1 cut(s)	1337
PpsI	GAGTC	4 cut(s)	44, 158, 667, 1559
Ppu21I	YACGTR	1 cut(s)	1337
PpuMI	RGGWCCY	1 cut(s)	2159
PscI	ACATGT	1 cut(s)	1759
PshBI	ATTAAT	1 cut(s)	558
PsiI	TTATAA	2 cut(s)	1454, 1830
Psp124BI	GAGCTC	1 cut(s)	1069
Psp5II	RGGWCCY	1 cut(s)	2159
Psp6I	CCWGG	2 cut(s)	380, 2043
PspCI	CACGTG	1 cut(s)	1337
PspEI	GGTNACC	1 cut(s)	1126
PspFI	CCCAGC	3 cut(s)	452, 716, 1963
PspGI	CCWGG	2 cut(s)	380, 2043
PspN4I	GGNNCC	3 cut(s)	1145, 1332, 1689
PspPI	GGNCC	3 cut(s)	643, 956, 2159
PspPPI	RGGWCCY	1 cut(s)	2159
PsuI	RGATCY	2 cut(s)	1143, 1658
PsyI	GACNNNGTC	1 cut(s)	170
PteI	GCGCGC	1 cut(s)	207
PvuII	CAGCTG	1 cut(s)	1721
RsaI	GTAC	5 cut(s)	296, 305, 472, 1605, 1836
RsaNI	GTAC	5 cut(s)	295, 304, 471, 1604, 1835
RseI	CAYNNNNRTG	3 cut(s)	549, 1776, 2121
SacI	GAGCTC	1 cut(s)	1069
SapI	GCTCTTC	2 cut(s)	1155, 1176
SatI	GCNGC	5 cut(s)	26, 222, 243, 578, 2141
Sau3AI	GATC	6 cut(s)	298, 435, 680, 1143, 1279, 1658
Sau96I	GGNCC	3 cut(s)	643, 956, 2159
SchI	GAGTC	4 cut(s)	45, 159, 667, 1559
ScrFI	CCNGG	2 cut(s)	382, 2045
SduI	GDGCHC	1 cut(s)	1069
SfuI	TTCGAA	1 cut(s)	1577
SinI	GGWCC	2 cut(s)	643, 2159
SmiMI	CAYNNNNRTG	3 cut(s)	549, 1776, 2121
SmlI	CTYRAG	3 cut(s)	684, 839, 1567
SmoI	CTYRAG	3 cut(s)	684, 839, 1567
SpeI	ACTAGT	1 cut(s)	1388
SseBI	AGGCCT	1 cut(s)	1573
SsiI	CCGC	9 cut(s)	26, 33, 222, 243, 313, 577, 995, 1106, 2127
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	7 cut(s)	278, 810, 1221, 1299, 1389, 1551, 1988
SstI	GAGCTC	1 cut(s)	1069
StuI	AGGCCT	1 cut(s)	1573
StyD4I	CCNGG	2 cut(s)	380, 2043
StyI	CCWWGG	2 cut(s)	978, 1495
TaaI	ACNGT	7 cut(s)	101, 163, 180, 475, 1603, 1842, 2039
TaiI	ACGT	3 cut(s)	800, 1082, 1339
TaqII	GACCGA	1 cut(s)	660
TauI	GCSGC	4 cut(s)	28, 224, 245, 580
TfiI	GAWTC	6 cut(s)	49, 359, 749, 1042, 1672, 1907
TscAI	CASTG	7 cut(s)	1290, 1332, 1614, 1626, 1735, 1754, 2065
TseFI	GTSAC	4 cut(s)	376, 1807, 1994, 2086
TseI	GCWGC	1 cut(s)	2140
Tsp45I	GTSAC	4 cut(s)	376, 1807, 1994, 2086
TspDTI	ATGAA	6 cut(s)	1191, 1431, 1497, 1505, 1700, 1905
TspRI	CASTG	7 cut(s)	1290, 1332, 1614, 1626, 1735, 1754, 2065
Tth111I	GACNNNGTC	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	1340
VpaK11BI	GGWCC	2 cut(s)	643, 2159
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	2 cut(s)	650, 2051
XceI	RCATGY	2 cut(s)	1763, 2169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XmiI	GTMKAC	2 cut(s)	39, 165
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	7 cut(s)	278, 810, 1221, 1299, 1389, 1551, 1988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.