Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006213

Physical Location & Seq

Genomic Coordinates Forward (+)

51144511 .. 51145240

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0404200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAGAATGCTTAAACACCCAAACATAGTGCAGCTATATGATGTCATAGCCTCCAGAGACAAGATCTACCTTGTCATGGAATACGCGAGAGGTGTTTACCACCACGATTTGAAGCCCGAAAACTTGCTGCTAGATGAAAATGGAGTGTTGAAGGTATCGGATTTTGGGCTAAGTGCGCTTGCTGAATCGAAGAGGGAAGATGGTTTACTACATACAAGTTGTGGCACACCTTCTTATGTAGCTCCTGAAGTGTTAGGCAGGAAAGCCTATGATGGAGCCAAAGCCGATATATGGTCTTGTGGGGTGATCTTGTTTGCACTATTGGCCGATGAAGTGAGGAGCCTCCTGTCTGGGATCCTCAACCTTGATCCAGATAAAAGGATTCTTATTTCAGAGATGATGGAAACTTGCTGGTTTAGAAAAGGCTCCAAATCCGTTACGACCATACCAGAAGTGGAAGACCCGGGTTTGTTGGGCGCTGATGCAGGGTTTGATGATCGTGACAACAGTGAGAAACTACAGCTTGCTAGACCAACCCTCTTTGAACGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

184

Amino Acids

20.57

Weight (kDa)

5.13

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	29 - 110	1.4e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 108	8.1e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23880
fragaria_vesca	FvH4_5g14450 FvH4_7g29660 FvH4_7g29660
malus_domestica	MD01G1203600.v1.1 MD07G1272900.v1.1
prunus_persica	Prupe.2G296200_v2.0.a1 Prupe.2G296200_v2.0.a1
pyrus_communis	pycom01g21270 pycom01g21280 pycom07g24930
rosa_chinensis	RchiOBHm_Chr1g0377671 RchiOBHm_Chr1g0377681 RchiOBHm_Chr1g0379161 RchiOBHm_Chr1g0379331
rosa_laevigata	RLG00000026506 RLG00000026773
rosa_multiflora	Rmu_sc0002832.1_g000015
rosa_roxburghii	Rroxscaffold_4G00281130
rosa_rugosa	Rorug01G0404200 Rorug01G0404300
rosa_samantha	Rh1AG428300 Rh1BG381000 Rh1CG000300 Rh1CG395000 Rh1DG412000
rosa_wichuraiana	Rw1G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	86
AclWI	GGATC	3 cut(s)	349, 362, 362
AcoI	YGGCCR	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	76, 291
AgsI	TTSAA	3 cut(s)	112, 151, 545
AluBI	AGCT	3 cut(s)	34, 242, 523
AluI	AGCT	3 cut(s)	34, 242, 523
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	3 cut(s)	349, 362, 362
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	31, 127
AspLEI	GCGC	2 cut(s)	178, 479
AsuC2I	CCSGG	2 cut(s)	464, 465
AsuHPI	GGTGA	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	463
BamHI	GGATCC	1 cut(s)	354
BarI	GAAGNNNNNNTAC	2 cut(s)	189, 221
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	43, 114
BccI	CCATC	3 cut(s)	194, 266, 394
BcnI	CCSGG	2 cut(s)	464, 465
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	131, 528
BfmI	CTRYAG	1 cut(s)	518
BfoI	RGCGCY	1 cut(s)	480
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	2 cut(s)	32, 128
BlsI	GCNGC	2 cut(s)	33, 129
Bme1390I	CCNGG	2 cut(s)	464, 465
BmeT110I	CYCGRG	1 cut(s)	463
BmiI	GGNNCC	4 cut(s)	277, 341, 356, 427
BmrFI	CCNGG	2 cut(s)	464, 465
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	37
BpuMI	CCSGG	2 cut(s)	464, 465
BsaJI	CCNNGG	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 291
BseDI	CCNNGG	1 cut(s)	463
BseLI	CCNNNNNNNGG	2 cut(s)	76, 291
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	43, 114
BsgI	GTGCAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	76, 291
BsmAI	GTCTC	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	463
Bsp143I	GATC	5 cut(s)	63, 306, 354, 367, 496
BspANI	GGCC	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	4 cut(s)	277, 341, 356, 427
BspPI	GGATC	3 cut(s)	349, 362, 362
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	5 cut(s)	63, 306, 354, 367, 496
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	180, 525
BstDEI	CTNAG	1 cut(s)	170
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	2 cut(s)	178, 479
BstKTI	GATC	5 cut(s)	66, 309, 357, 370, 499
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	5 cut(s)	63, 306, 354, 367, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 323
BstSCI	CCNGG	2 cut(s)	462, 463
BstSFI	CTRYAG	1 cut(s)	518
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	43, 114
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	2 cut(s)	63, 354
BstYI	RGATCY	2 cut(s)	63, 354
BsuRI	GGCC	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	180, 525
CfoI	GCGC	2 cut(s)	178, 479
Cfr9I	CCCGGG	1 cut(s)	463
CviAII	CATG	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	5 cut(s)	65, 308, 356, 369, 498
DpnII	GATC	5 cut(s)	63, 306, 354, 367, 496
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	463
FaeI	CATG	1 cut(s)	79
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	32, 128
Fsp4HI	GCNGC	2 cut(s)	32, 128
FspBI	CTAG	2 cut(s)	131, 528
GlaI	GCGC	2 cut(s)	177, 478
GluI	GCNGC	2 cut(s)	32, 128
GsuI	CTGGAG	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	1 cut(s)	464
HhaI	GCGC	2 cut(s)	178, 479
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	2 cut(s)	176, 477
HinP1I	GCGC	2 cut(s)	176, 477
HinfI	GANTC	2 cut(s)	185, 382
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	2 cut(s)	97, 206
Hpy188I	TCNGA	2 cut(s)	160, 394
Hpy188III	TCNNGA	4 cut(s)	54, 245, 371, 500
Hpy8I	GTNNAC	2 cut(s)	97, 206
HpyAV	CCTTC	2 cut(s)	145, 240
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4V	TGCA	3 cut(s)	31, 317, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 323
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	2 cut(s)	176, 477
Kzo9I	GATC	5 cut(s)	63, 306, 354, 367, 496
LmnI	GCTCC	4 cut(s)	247, 275, 339, 431
Lsp1109I	GCAGC	2 cut(s)	43, 114
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	2 cut(s)	131, 528
MaeIII	GTNAC	2 cut(s)	436, 500
MalI	GATC	5 cut(s)	65, 308, 356, 369, 498
MboI	GATC	5 cut(s)	63, 306, 354, 367, 496
MboII	GAAGA	3 cut(s)	202, 209, 470
MflI	RGATCY	2 cut(s)	63, 354
MnlI	CCTC	7 cut(s)	61, 83, 186, 330, 353, 368, 548
MseI	TTAA	1 cut(s)	12
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	2 cut(s)	464, 465
Mva1269I	GAATGC	1 cut(s)	12
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	175, 323
NciI	CCSGG	2 cut(s)	464, 465
NdeII	GATC	5 cut(s)	63, 306, 354, 367, 496
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	4 cut(s)	277, 341, 356, 427
NmuCI	GTSAC	1 cut(s)	500
PctI	GAATGC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	185, 382
PkrI	GCNGC	2 cut(s)	33, 129
PspN4I	GGNNCC	4 cut(s)	277, 341, 356, 427
PsuI	RGATCY	2 cut(s)	63, 354
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	2 cut(s)	32, 128
Sau3AI	GATC	5 cut(s)	63, 306, 354, 367, 496
ScrFI	CCNGG	2 cut(s)	464, 465
SetI	ASST	8 cut(s)	36, 72, 94, 156, 232, 244, 366, 525
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	518
SmaI	CCCGGG	1 cut(s)	465
SspMI	CTAG	2 cut(s)	131, 528
StyD4I	CCNGG	2 cut(s)	462, 463
TaaI	ACNGT	1 cut(s)	509
TaqI	TCGA	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	185, 382
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	2 cut(s)	31, 127
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	2 cut(s)	150, 345
TspGWI	ACGGA	1 cut(s)	424
TspMI	CCCGGG	1 cut(s)	463
TspRI	CASTG	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmaI	CCCGGG	1 cut(s)	463
XspI	CTAG	2 cut(s)	131, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.