Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006213

Physical Location & Seq

Genomic Coordinates Reverse (-)

65299528 .. 65301256

Gene Structure 1729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60251

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTTCTCTAAAGTTTGTTTTGGTTCATGGAACAGCTGAGGCCACTGAATATTTGAAGCAACACTGCTTGAAATATGTTTGCTCTCATGTATATGCTCCTCAACTTGAAGAAACAATTGATGTCACATCTGTTTTATGTGCTTATAAAGTTCAACTGTCCGAGAGGCTCATGAGTAACAGAATCTTTAGGAAGGTAAGCATTCAAGTGTCAAGATTTATCTTATGTTGTCTATATCTTATCCCTCGTAACGATTTGATCTTGGTTCGATTCTTATGTAGGGAAGACAGAAGACGAAATGCTGTCTTTACTACCCTGCTCAACCCTAGCTCCCCACACAAACCAATCCTAGTCAGTGACTTAAAAATGGCCGATTTAAAGCAATTTCTTGCTGATGACGGTGTCCAGGTTGAATTTGCTGGTGGGGCTTTGCGATGTGGTGAATATGGTGGTGGTGCTGGTTCGCAGCAAGTTGTGATTGAAGGACATGAAGGTCCAGCATGTGAGGATTATTACAAGATACGGGAATATCTCTATTCGCACTTTTATTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

185

Amino Acids

21.08

Weight (kDa)

7.58

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSF100_C	PF13299	110 - 182	4e-11	Cleavage and polyadenylation factor 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23880
fragaria_vesca	FvH4_5g14450 FvH4_7g29660 FvH4_7g29660
malus_domestica	MD01G1203600.v1.1 MD07G1272900.v1.1
prunus_persica	Prupe.2G296200_v2.0.a1 Prupe.2G296200_v2.0.a1
pyrus_communis	pycom01g21270 pycom01g21280 pycom07g24930
rosa_chinensis	RchiOBHm_Chr1g0377671 RchiOBHm_Chr1g0377681 RchiOBHm_Chr1g0379161 RchiOBHm_Chr1g0379331
rosa_laevigata	RLG00000026506 RLG00000026773
rosa_multiflora	Rmu_sc0002832.1_g000015
rosa_roxburghii	Rroxscaffold_4G00281130
rosa_rugosa	Rorug01G0404200 Rorug01G0404300
rosa_samantha	Rh1AG428300 Rh1BG381000 Rh1CG000300 Rh1CG395000 Rh1DG412000
rosa_wichuraiana	Rw1G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AasI	GACNNNNNNGTC	1 cut(s)	492
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	413
AgsI	TTSAA	7 cut(s)	58, 73, 110, 155, 206, 413, 482
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	2 cut(s)	38, 330
AluI	AGCT	2 cut(s)	38, 330
AoxI	GGCC	2 cut(s)	42, 369
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	494
BbsI	GAAGAC	2 cut(s)	291, 298
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	478
BciT130I	CCWGG	1 cut(s)	407
BfaI	CTAG	2 cut(s)	327, 350
BisI	GCNGC	1 cut(s)	467
BlsI	GCNGC	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	407
BpiI	GAAGAC	2 cut(s)	291, 298
Bpu10I	CCTNAGC	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
BseBI	CCWGG	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	478
BshFI	GGCC	2 cut(s)	44, 371
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	44, 371
Bsp143I	GATC	1 cut(s)	258
BspANI	GGCC	2 cut(s)	44, 371
BspCNI	CTCAG	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	171
BssMI	GATC	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	159, 401
BstDEI	CTNAG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	2 cut(s)	291, 298
BsuRI	GGCC	2 cut(s)	44, 371
BtgZI	GCGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	3 cut(s)	45, 64, 361
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	494
CviAII	CATG	5 cut(s)	29, 89, 172, 488, 501
CviJI	RGCY	7 cut(s)	5, 38, 44, 169, 330, 371, 428
CviKI_1	RGCY	7 cut(s)	5, 38, 44, 169, 330, 371, 428
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
DraI	TTTAAA	1 cut(s)	378
DrdI	GACNNNNNNGTC	1 cut(s)	492
DseDI	GACNNNNNNGTC	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	405
FaeI	CATG	5 cut(s)	32, 92, 175, 491, 504
FatI	CATG	5 cut(s)	28, 88, 171, 487, 500
Fnu4HI	GCNGC	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	467
FspBI	CTAG	2 cut(s)	327, 350
GluI	GCNGC	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	44, 371
Hin1II	CATG	5 cut(s)	32, 92, 175, 491, 504
HinfI	GANTC	2 cut(s)	183, 270
HphI	GGTGA	1 cut(s)	452
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	172, 213
HpyAV	CCTTC	3 cut(s)	187, 476, 485
HpyCH4III	ACNGT	2 cut(s)	159, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	32, 92, 175, 491, 504
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	103, 335
LpnPI	CCDG	6 cut(s)	329, 392, 405, 419, 444, 510
Lsp1109I	GCAGC	1 cut(s)	478
MaeI	CTAG	2 cut(s)	327, 350
MaeIII	GTNAC	4 cut(s)	124, 176, 248, 356
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	3 cut(s)	122, 296, 303
MfeI	CAATTG	1 cut(s)	117
MluCI	AATT	3 cut(s)	117, 383, 413
MnlI	CCTC	5 cut(s)	34, 111, 159, 255, 499
MseI	TTAA	2 cut(s)	362, 377
MslI	CAYNNNNRTG	2 cut(s)	93, 206
MspA1I	CMGCKG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	5 cut(s)	32, 92, 175, 491, 504
NmuCI	GTSAC	2 cut(s)	124, 356
NspI	RCATGY	1 cut(s)	504
PagI	TCATGA	1 cut(s)	171
PctI	GAATGC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	183, 270
PflFI	GACNNNGTC	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	494
PsyI	GACNNNGTC	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	38
RseI	CAYNNNNRTG	2 cut(s)	93, 206
SaqAI	TTAA	2 cut(s)	362, 377
SatI	GCNGC	1 cut(s)	467
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	494
ScrFI	CCNGG	1 cut(s)	407
SetI	ASST	5 cut(s)	40, 198, 332, 411, 496
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	2 cut(s)	93, 206
Sse9I	AATT	3 cut(s)	117, 383, 413
SspI	AATATT	1 cut(s)	53
SspMI	CTAG	2 cut(s)	327, 350
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	159, 401
TaqI	TCGA	1 cut(s)	268
TasI	AATT	3 cut(s)	117, 383, 413
TfiI	GAWTC	2 cut(s)	183, 270
Tru1I	TTAA	2 cut(s)	362, 377
Tru9I	TTAA	2 cut(s)	362, 377
TscAI	CASTG	3 cut(s)	52, 71, 361
TseFI	GTSAC	2 cut(s)	124, 356
TseI	GCWGC	1 cut(s)	466
Tsp45I	GTSAC	2 cut(s)	124, 356
TspDTI	ATGAA	2 cut(s)	17, 504
TspRI	CASTG	3 cut(s)	52, 71, 361
Tth111I	GACNNNGTC	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	1 cut(s)	504
XspI	CTAG	2 cut(s)	327, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.