Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006213

Physical Location & Seq

Genomic Coordinates Reverse (-)

51146457 .. 51148421

Gene Structure 1965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0404300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCCGGTGTTGGGAACAGTTGTTTTAGCTCAGTGTTCACAGCTCCTCTTGAAAAAGATGTGTTCTTGAAGAAGATGAAGAAATGTTCATGCAGTTGTTTAATGGGTTCCAACAACTCCTTGAAATTGAACAAAGTCTATTGTGGATTGCCGGAGAGTGGAATTGAAAAGAAACCCACAAGCAGCACAGCCTCAAATTCAAAGAAAGTGGTTGAGGATTACAACACAGCTATGAAAAGGATGATGAGGAACCCATATGAATATCATCATGATCTGGGCATGAACTACACACTGATAACGGATAACTTGATCGTGGGCTCCCAACCTCAGAAACCAGAAGATATAGATCACCTGAGAGAAGTAGAGAATGTGGCATACATTCTAAACTTGCAGCAGGACAATGATGTTGAATATTGGGGAATTGACTTGCAGTCGATAATAAAAAGATGTAAAGAAGTCGGAATCCGTCATATGAGGAGGCCTGCAAAAGATTTTGATCCAGATTCCTTGCGAAATGGTCTACCGAAAGCAGTTTCATCACTGGAATGGGCCATATATGAGGGAAAAGGAAAAGTGTACGTGCATTGCACTGCTGGATTGGGAAGGGCCCCTGCTGTGGCAATAGCTTACATGTACTGGTTCCTCAGAATGAATCTGAATGCAGCATATGATGCACTGACATCCAAGAGACCCTGTGGACCCAATAAGAGAGCAATACAAGGAGCCACTTATGATCTGGCCAAAAATGATCCATGGAAGGAGCCCTTTGAGAATCTTCCTGAATATGCATTTGAGGATATGGCAGATTGGGAAAGGAAGTTGATTCAAGACCGTGTCATTTCTCTCCGTGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

285

Amino Acids

32.32

Weight (kDa)

8.49

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	118 - 232	5.4e-15	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23880
fragaria_vesca	FvH4_5g14450 FvH4_7g29660 FvH4_7g29660
malus_domestica	MD01G1203600.v1.1 MD07G1272900.v1.1
prunus_persica	Prupe.2G296200_v2.0.a1 Prupe.2G296200_v2.0.a1
pyrus_communis	pycom01g21270 pycom01g21280 pycom07g24930
rosa_chinensis	RchiOBHm_Chr1g0377671 RchiOBHm_Chr1g0377681 RchiOBHm_Chr1g0379161 RchiOBHm_Chr1g0379331
rosa_laevigata	RLG00000026506 RLG00000026773
rosa_multiflora	Rmu_sc0002832.1_g000015
rosa_roxburghii	Rroxscaffold_4G00281130
rosa_rugosa	Rorug01G0404200 Rorug01G0404300
rosa_samantha	Rh1AG428300 Rh1BG381000 Rh1CG000300 Rh1CG395000 Rh1DG412000
rosa_wichuraiana	Rw1G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	520
AclWI	GGATC	2 cut(s)	491, 743
AcoI	YGGCCR	2 cut(s)	3, 738
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	2 cut(s)	578, 635
AfiI	CCNNNNNNNGG	3 cut(s)	12, 158, 616
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	8 cut(s)	53, 70, 124, 130, 167, 201, 410, 827
AhdI	GACNNNNNGTC	1 cut(s)	430
AluBI	AGCT	4 cut(s)	30, 44, 230, 626
AluI	AGCT	4 cut(s)	30, 44, 230, 626
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	491, 743
AoxI	GGCC	5 cut(s)	3, 479, 549, 606, 738
ApaI	GGGCCC	1 cut(s)	610
ApeKI	GCWGC	3 cut(s)	183, 391, 662
ApoI	RAATTY	1 cut(s)	196
AspS9I	GGNCC	4 cut(s)	549, 606, 607, 698
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	698
BaeGI	GKGCMC	1 cut(s)	610
BalI	TGGCCA	1 cut(s)	740
BanII	GRGCYC	3 cut(s)	320, 610, 765
BbvI	GCAGC	3 cut(s)	195, 403, 674
BcoDI	GTCTC	1 cut(s)	682
BisI	GCNGC	3 cut(s)	184, 392, 663
BlsI	GCNGC	3 cut(s)	185, 393, 664
Bme18I	GGWCC	1 cut(s)	698
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmgT120I	GGNCC	4 cut(s)	549, 606, 607, 698
BmiI	GGNNCC	9 cut(s)	109, 251, 319, 608, 609, 641, 700, 724, 762
BmsI	GCATC	1 cut(s)	661
BsaAI	YACGTR	1 cut(s)	580
BsaBI	GATNNNNATC	2 cut(s)	345, 495
BsaI	GGTCTC	1 cut(s)	682
BsaJI	CCNNGG	2 cut(s)	752, 847
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 158, 616
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	546, 641
Bse3DI	GCAATG	1 cut(s)	583
Bse8I	GATNNNNATC	2 cut(s)	345, 495
BseDI	CCNNGG	2 cut(s)	752, 847
BseGI	GGATG	2 cut(s)	246, 680
BseJI	GATNNNNATC	2 cut(s)	345, 495
BseLI	CCNNNNNNNGG	3 cut(s)	12, 158, 616
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	4 cut(s)	45, 341, 344, 658
BseNI	ACTGG	2 cut(s)	546, 641
BseRI	GAGGAG	2 cut(s)	36, 490
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	3 cut(s)	195, 403, 674
BshFI	GGCC	5 cut(s)	5, 481, 551, 608, 740
BsiSI	CCGG	2 cut(s)	6, 152
BslI	CCNNNNNNNGG	3 cut(s)	12, 158, 616
BsmAI	GTCTC	1 cut(s)	682
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	5 cut(s)	5, 481, 551, 608, 740
Bso31I	GGTCTC	1 cut(s)	682
Bsp120I	GGGCCC	1 cut(s)	606
Bsp1286I	GDGCHC	3 cut(s)	320, 610, 765
Bsp143I	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
Bsp19I	CCATGG	1 cut(s)	752
BspANI	GGCC	5 cut(s)	5, 481, 551, 608, 740
BspCNI	CTCAG	4 cut(s)	44, 340, 345, 657
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	9 cut(s)	109, 251, 319, 608, 609, 641, 700, 724, 762
BspPI	GGATC	2 cut(s)	491, 743
BspTNI	GGTCTC	1 cut(s)	682
BsrDI	GCAATG	1 cut(s)	583
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	546, 641
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	752, 847
BssMI	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
BssT1I	CCWWGG	1 cut(s)	752
Bst4CI	ACNGT	2 cut(s)	20, 833
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	4 cut(s)	31, 327, 353, 644
BstDSI	CCRYGG	2 cut(s)	752, 847
BstF5I	GGATG	2 cut(s)	246, 680
BstKTI	GATC	6 cut(s)	274, 312, 349, 499, 736, 751
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	671
BstNSI	RCATGY	1 cut(s)	634
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	3 cut(s)	195, 403, 674
BsuRI	GGCC	5 cut(s)	5, 481, 551, 608, 740
BtgI	CCRYGG	2 cut(s)	752, 847
BtsCI	GGATG	2 cut(s)	246, 680
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	5 cut(s)	39, 290, 539, 588, 674
Cac8I	GCNNGC	1 cut(s)	483
CciI	TCATGA	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	4 cut(s)	549, 606, 607, 698
Csp6I	GTAC	2 cut(s)	577, 634
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	6 cut(s)	90, 269, 280, 631, 753, 855
CviQI	GTAC	2 cut(s)	577, 634
DdeI	CTNAG	4 cut(s)	31, 327, 353, 644
DpnI	GATC	6 cut(s)	273, 311, 348, 498, 735, 750
DpnII	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
DriI	GACNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	2 cut(s)	3, 738
Eam1105I	GACNNNNNGTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	752
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	3 cut(s)	320, 610, 765
Eco31I	GGTCTC	1 cut(s)	682
Eco47I	GGWCC	1 cut(s)	698
EcoO109I	RGGNCCY	2 cut(s)	606, 607
EcoT14I	CCWWGG	1 cut(s)	752
EcoT22I	ATGCAT	1 cut(s)	790
EcoT38I	GRGCYC	3 cut(s)	320, 610, 765
ErhI	CCWWGG	1 cut(s)	752
FaeI	CATG	6 cut(s)	93, 272, 283, 634, 756, 858
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FatI	CATG	6 cut(s)	89, 268, 279, 630, 752, 854
FauNDI	CATATG	3 cut(s)	256, 471, 667
FblI	GTMKAC	1 cut(s)	520
Fnu4HI	GCNGC	3 cut(s)	184, 392, 663
FokI	GGATG	2 cut(s)	253, 667
FriOI	GRGCYC	3 cut(s)	320, 610, 765
Fsp4HI	GCNGC	3 cut(s)	184, 392, 663
GluI	GCNGC	3 cut(s)	184, 392, 663
HaeIII	GGCC	5 cut(s)	5, 481, 551, 608, 740
HapII	CCGG	2 cut(s)	6, 152
Hin1II	CATG	6 cut(s)	93, 272, 283, 634, 756, 858
HinfI	GANTC	5 cut(s)	462, 503, 652, 772, 823
HpaII	CCGG	2 cut(s)	6, 152
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	4 cut(s)	39, 521, 577, 698
Hpy188I	TCNGA	4 cut(s)	330, 461, 647, 657
Hpy188III	TCNNGA	6 cut(s)	50, 67, 269, 500, 779, 827
Hpy8I	GTNNAC	4 cut(s)	39, 521, 577, 698
HpyAV	CCTTC	2 cut(s)	597, 751
HpyCH4III	ACNGT	2 cut(s)	20, 833
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	9 cut(s)	93, 391, 430, 485, 583, 588, 662, 674, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	671
HpyF3I	CTNAG	4 cut(s)	31, 327, 353, 644
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	6 cut(s)	93, 272, 283, 634, 756, 858
Kzo9I	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
LmnI	GCTCC	4 cut(s)	49, 323, 722, 760
Lsp1109I	GCAGC	3 cut(s)	195, 403, 674
LweI	GCATC	1 cut(s)	661
MaeII	ACGT	1 cut(s)	579
MalI	GATC	6 cut(s)	273, 311, 348, 498, 735, 750
MboI	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
MboII	GAAGA	5 cut(s)	82, 85, 91, 350, 767
MhlI	GDGCHC	3 cut(s)	320, 610, 765
MlsI	TGGCCA	1 cut(s)	740
MluCI	AATT	4 cut(s)	125, 162, 196, 420
MluNI	TGGCCA	1 cut(s)	740
MmeI	TCCRAC	2 cut(s)	135, 439
Mox20I	TGGCCA	1 cut(s)	740
Mph1103I	ATGCAT	1 cut(s)	790
MscI	TGGCCA	1 cut(s)	740
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	230, 544
Msp20I	TGGCCA	1 cut(s)	740
MspI	CCGG	2 cut(s)	6, 152
Mva1269I	GAATGC	1 cut(s)	664
MwoI	GCNNNNNNNGC	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	752
NdeI	CATATG	3 cut(s)	256, 471, 667
NdeII	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
NlaIII	CATG	6 cut(s)	93, 272, 283, 634, 756, 858
NlaIV	GGNNCC	9 cut(s)	109, 251, 319, 608, 609, 641, 700, 724, 762
NsiI	ATGCAT	1 cut(s)	790
NspI	RCATGY	1 cut(s)	634
PagI	TCATGA	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	481
PciI	ACATGT	1 cut(s)	630
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	5 cut(s)	462, 503, 652, 772, 823
PflFI	GACNNNGTC	1 cut(s)	833
PkrI	GCNGC	3 cut(s)	185, 393, 664
Ppu21I	YACGTR	1 cut(s)	580
PscI	ACATGT	1 cut(s)	630
PspN4I	GGNNCC	9 cut(s)	109, 251, 319, 608, 609, 641, 700, 724, 762
PspOMI	GGGCCC	1 cut(s)	606
PspPI	GGNCC	4 cut(s)	549, 606, 607, 698
PsyI	GACNNNGTC	1 cut(s)	833
RsaI	GTAC	2 cut(s)	578, 635
RsaNI	GTAC	2 cut(s)	577, 634
RseI	CAYNNNNRTG	2 cut(s)	230, 544
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	3 cut(s)	184, 392, 663
Sau3AI	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
Sau96I	GGNCC	4 cut(s)	549, 606, 607, 698
SduI	GDGCHC	3 cut(s)	320, 610, 765
SetI	ASST	7 cut(s)	32, 46, 232, 328, 354, 582, 628
SfaNI	GCATC	1 cut(s)	661
SinI	GGWCC	1 cut(s)	698
SmiMI	CAYNNNNRTG	2 cut(s)	230, 544
Sse9I	AATT	4 cut(s)	125, 162, 196, 420
SseBI	AGGCCT	1 cut(s)	481
SspI	AATATT	1 cut(s)	413
StuI	AGGCCT	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	752
TaaI	ACNGT	2 cut(s)	20, 833
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	1 cut(s)	434
TasI	AATT	4 cut(s)	125, 162, 196, 420
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	5 cut(s)	462, 503, 652, 772, 823
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	5 cut(s)	39, 297, 546, 595, 681
TseI	GCWGC	3 cut(s)	183, 391, 662
TspDTI	ATGAA	7 cut(s)	78, 92, 248, 273, 296, 525, 665
TspGWI	ACGGA	3 cut(s)	314, 455, 836
TspRI	CASTG	5 cut(s)	39, 297, 546, 595, 681
Tth111I	GACNNNGTC	1 cut(s)	833
VpaK11BI	GGWCC	1 cut(s)	698
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	520
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.