Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003744

Physical Location & Seq

Genomic Coordinates Reverse (-)

8733914 .. 8736094

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCATTGGAAGCTGATCGCAAGCTGAAGCTGGTTATATTATGTCTTCTCATGTCAATAGCAATTCCAGTCTTGAAGGCCAACATAGGGATGTTTGATGATGTGTGGGAGCAACGACAGAAAGAAGCTGAGCAGGCTGCGAAGGCTGCCTACCAACATGATCCTCTAAAGCATGTAGTCCATTTAAACAAGCAAGTGCACAAGGCGATGAAGGGTCATAACGACACAAGAAGGAACTTGAGACACCATGTTGATGGTCCATGTGAGGCTATAAACCCGATCGACAAATGCTGGAGATGCGACCCAAACTGGCATGAGAATCGGCAGAAGCTAGCCGATTGTGCTCTTGGCTTTGGACATGGTACAACCGGAGGCAAAGGTGGAAAAATCTATGTGGTCACAGATGATACTGATGAGGACATGGTGAACCCAAAAGAGGGGACATTGCGGTATGCTGTGACTCGACCTGAACCGCTGTGGATCATATTTGAAGAAGACATGAAGATTGAACTGAAACAAGAGCTCATGATGGCTAGTGACAAGACCATTGATGGACGAGGGGTTAATGTGCACATTCAGGGTGGTGGCCAAATAACTCTGCAGTATGTGCGCAACATCATTATCAGTAACATTCACGTTCGTGACACCATTCCTAAGAATGGTGGCATGATTAGGGATTCCATCAATCACTATGGATTACGAACAGAAAGCGATGGTGATGGAATATCCTTGTTTGGTGCCACAAACGTTTGGATAGACCATGTTTCTGCATCAAATTGTGCCGATGGACTTATTGATGTCATTCAAGCGTCTACCGCCATTACCATATCCAACTCTCACTTCACCGATCATAATGATGTGATGCTGTTTGGTTCAAGTGACAGCAACAGCAAAGATGAAATTATGCAGATAACTTTAGCTTTCAACCATTTCGGACAGGGATTGGTTCAGAGGATGCCAAGGTGCAGATTTGGTTTTTTCCATGTTGTGAACAATGACTACACACACTGGATTATGTATGCCATCGGCGGCAGCAGCCATCCTACCATACTAAGCCAGGGAAATCGCTACATTGCTCCAGAAAATGAGGCAGCTAAAGAGGTATGTTATAGAGTCAACACAGATAAGAGCGTATGGAAAAACTGGAATTGGCAATCAGATAAAGATCTTTTTGTGAATGGAGCGACTTTTACTGAATCTGGAGGCCCTGTTCATAGTATCGACACGAAGGATATGATCGAAGCGCAAGCTGGGACAGCCGTGACCTTTCTCACACGCTATGCCGGTCCTCTTAAATGTAGAAAAGGCCAGGGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C Pec_lyase_N

Protein Analysis

440

Amino Acids

49.1

Weight (kDa)

6.37

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pec_lyase_N	PF04431	28 - 80	1.4e-19	Pectate lyase, N terminus
Pectate_lyase_4	PF00544	172 - 402	4.1e-22	Pectate lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01270 AT5G15110
fragaria_vesca	FvH4_5g15430 FvH4_6g49230
malus_domestica	MD06G1188600.v1.1 MD09G1047400.v1.1 MD14G1195000.v1.1 MD14G1195200.v1.1 MD17G1047500.v1.1
prunus_persica	Prupe.3G271600_v2.0.a1 Prupe.5G186900_v2.0.a1
pyrus_communis	pycom06g16740 pycom17g04230
rosa_chinensis	RchiOBHm_Chr2g0169091 RchiOBHm_Chr7g0180651
rosa_laevigata	RLG00000005246 RLG00000021833
rosa_multiflora	Rmu_co8469407.1_g000001 Rmu_co8473671.1_g000001 Rmu_ssc0000393.1_g000032
rosa_roxburghii	Rroxscaffold_2G00082470
rosa_rugosa	Rorug02G0536800 Rorug06G0434600
rosa_samantha	Rh2AG608700 Rh2BG621600 Rh2CG590300 Rh2DG632200 Rh7AG036000 Rh7BG035900 Rh7CG037500 Rh7DG036100
rosa_wichuraiana	Rw2G050470 Rw7G002960 Rw7G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	737
AccI	GTMKAC	1 cut(s)	812
AciI	CCGC	4 cut(s)	448, 473, 816, 1029
AclI	AACGTT	1 cut(s)	747
AclWI	GGATC	2 cut(s)	155, 488
AcoI	YGGCCR	1 cut(s)	586
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	4 cut(s)	87, 436, 437, 659
AgsI	TTSAA	6 cut(s)	76, 491, 509, 806, 876, 925
AjnI	CCWGG	2 cut(s)	1056, 1308
AjuI	GAANNNNNNNTTGG	2 cut(s)	824, 856
AleI	CACNNNNGTG	1 cut(s)	639
AloI	GAACNNNNNNTCC	2 cut(s)	1194, 1226
AluBI	AGCT	9 cut(s)	14, 25, 31, 128, 331, 523, 920, 1094, 1250
AluI	AGCT	9 cut(s)	14, 25, 31, 128, 331, 523, 920, 1094, 1250
Alw21I	GWGCWC	4 cut(s)	201, 346, 525, 573
Alw26I	GTCTC	1 cut(s)	235
Alw44I	GTGCAC	2 cut(s)	197, 569
AlwI	GGATC	2 cut(s)	155, 488
AoxI	GGCC	4 cut(s)	78, 586, 1204, 1306
ApaLI	GTGCAC	2 cut(s)	197, 569
ApeKI	GCWGC	5 cut(s)	137, 146, 1032, 1035, 1091
AspLEI	GCGC	2 cut(s)	612, 1246
AspS9I	GGNCC	3 cut(s)	257, 1205, 1286
AsuHPI	GGTGA	3 cut(s)	436, 728, 835
AsuNHI	GCTAGC	1 cut(s)	331
AvaII	GGWCC	2 cut(s)	257, 1286
BaeGI	GKGCMC	2 cut(s)	201, 573
BalI	TGGCCA	1 cut(s)	588
BanI	GGYRCC	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	525
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BbsI	GAAGAC	2 cut(s)	38, 501
Bbv12I	GWGCWC	4 cut(s)	201, 346, 525, 573
BbvI	GCAGC	5 cut(s)	124, 133, 1044, 1047, 1103
BccI	CCATC	9 cut(s)	248, 523, 545, 689, 707, 713, 779, 1031, 1047
BceAI	ACGGC	1 cut(s)	1244
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciT130I	CCWGG	2 cut(s)	1058, 1310
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	332, 534
BfmI	CTRYAG	1 cut(s)	599
BglII	AGATCT	1 cut(s)	1165
BisI	GCNGC	6 cut(s)	138, 147, 1030, 1033, 1036, 1092
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	6 cut(s)	139, 148, 1031, 1034, 1037, 1093
Bme1390I	CCNGG	2 cut(s)	1058, 1310
Bme18I	GGWCC	2 cut(s)	257, 1286
BmgT120I	GGNCC	3 cut(s)	257, 1205, 1286
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	2 cut(s)	1058, 1310
BmsI	GCATC	4 cut(s)	287, 779, 852, 945
BmtI	GCTAGC	1 cut(s)	335
BpiI	GAAGAC	2 cut(s)	38, 501
BpmI	CTGGAG	3 cut(s)	313, 1062, 1221
Bpu1102I	GCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	1164
BsaJI	CCNNGG	3 cut(s)	959, 1057, 1309
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	2 cut(s)	1194, 1224
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 436, 437, 659
Bse118I	RCCGGY	1 cut(s)	1283
Bse1I	ACTGG	4 cut(s)	68, 314, 1013, 1148
Bse3DI	GCAATG	2 cut(s)	443, 1071
Bse8I	GATNNNNATC	1 cut(s)	1164
BseBI	CCWGG	2 cut(s)	1058, 1310
BseDI	CCNNGG	3 cut(s)	959, 1057, 1309
BseGI	GGATG	4 cut(s)	96, 960, 1039, 1319
BseJI	GATNNNNATC	1 cut(s)	1164
BseLI	CCNNNNNNNGG	4 cut(s)	87, 436, 437, 659
BseMI	GCAATG	2 cut(s)	443, 1071
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	4 cut(s)	68, 314, 1013, 1148
BseSI	GKGCMC	2 cut(s)	201, 573
BseXI	GCAGC	5 cut(s)	124, 133, 1044, 1047, 1103
BseYI	CCCAGC	1 cut(s)	1250
BsgI	GTGCAG	1 cut(s)	985
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	80, 588, 1206, 1308
BshNI	GGYRCC	1 cut(s)	737
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	4 cut(s)	201, 346, 525, 573
BsiSI	CCGG	2 cut(s)	369, 1284
BslFI	GGGAC	2 cut(s)	454, 1267
BslI	CCNNNNNNNGG	4 cut(s)	87, 436, 437, 659
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	2 cut(s)	454, 1267
BsnI	GGCC	4 cut(s)	80, 588, 1206, 1308
Bsp1286I	GDGCHC	4 cut(s)	201, 346, 525, 573
Bsp143I	GATC	7 cut(s)	16, 160, 279, 480, 847, 1165, 1236
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	4 cut(s)	448, 473, 816, 1029
BspANI	GGCC	4 cut(s)	80, 588, 1206, 1308
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	1 cut(s)	739
BspMAI	CTGCAG	1 cut(s)	603
BspOI	GCTAGC	1 cut(s)	335
BspPI	GGATC	2 cut(s)	155, 488
BspT107I	GGYRCC	1 cut(s)	737
BsrDI	GCAATG	2 cut(s)	443, 1071
BsrFI	RCCGGY	1 cut(s)	1283
BsrI	ACTGG	4 cut(s)	68, 314, 1013, 1148
BssAI	RCCGGY	1 cut(s)	1283
BssECI	CCNNGG	3 cut(s)	959, 1057, 1309
BssMI	GATC	7 cut(s)	16, 160, 279, 480, 847, 1165, 1236
BssT1I	CCWWGG	1 cut(s)	959
Bst2UI	CCWGG	2 cut(s)	1058, 1310
BstAPI	GCANNNNNTGC	1 cut(s)	607
BstC8I	GCNNGC	4 cut(s)	23, 135, 333, 1248
BstDEI	CTNAG	3 cut(s)	129, 654, 1052
BstF5I	GGATG	4 cut(s)	96, 960, 1039, 1319
BstHHI	GCGC	2 cut(s)	612, 1246
BstKTI	GATC	7 cut(s)	19, 163, 282, 483, 850, 1168, 1239
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	7 cut(s)	16, 160, 279, 480, 847, 1165, 1236
BstMCI	CGRYCG	1 cut(s)	282
BstNI	CCWGG	2 cut(s)	1058, 1310
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	1056, 1308
BstSFI	CTRYAG	1 cut(s)	599
BstSLI	GKGCMC	2 cut(s)	201, 573
BstV1I	GCAGC	5 cut(s)	124, 133, 1044, 1047, 1103
BstV2I	GAAGAC	2 cut(s)	38, 501
BstX2I	RGATCY	1 cut(s)	1165
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	1165
BsuRI	GGCC	4 cut(s)	80, 588, 1206, 1308
BtgZI	GCGATG	2 cut(s)	221, 726
BtsCI	GGATG	4 cut(s)	96, 960, 1039, 1319
BtsIMutI	CAGTG	1 cut(s)	1006
Cac8I	GCNNGC	4 cut(s)	23, 135, 333, 1248
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	2 cut(s)	612, 1246
Cfr10I	RCCGGY	1 cut(s)	1283
Cfr13I	GGNCC	3 cut(s)	257, 1205, 1286
CseI	GACGC	1 cut(s)	798
Csp6I	GTAC	1 cut(s)	363
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	3 cut(s)	129, 654, 1052
DpnI	GATC	7 cut(s)	18, 162, 281, 482, 849, 1167, 1238
DpnII	GATC	7 cut(s)	16, 160, 279, 480, 847, 1165, 1236
DraI	TTTAAA	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	586
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	959
Eco24I	GRGCYC	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	257, 1286
Eco53kI	GAGCTC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	1205
EcoRII	CCWGG	2 cut(s)	1056, 1308
EcoT14I	CCWWGG	1 cut(s)	959
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	959
FaqI	GGGAC	2 cut(s)	454, 1267
FblI	GTMKAC	1 cut(s)	812
Fnu4HI	GCNGC	6 cut(s)	138, 147, 1030, 1033, 1036, 1092
FokI	GGATG	3 cut(s)	103, 967, 1026
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	6 cut(s)	138, 147, 1030, 1033, 1036, 1092
FspBI	CTAG	2 cut(s)	332, 534
FspI	TGCGCA	1 cut(s)	611
GlaI	GCGC	2 cut(s)	611, 1245
GluI	GCNGC	6 cut(s)	138, 147, 1030, 1033, 1036, 1092
GsaI	CCCAGC	1 cut(s)	1254
GsuI	CTGGAG	3 cut(s)	313, 1062, 1221
HaeIII	GGCC	4 cut(s)	80, 588, 1206, 1308
HapII	CCGG	2 cut(s)	369, 1284
HgaI	GACGC	1 cut(s)	798
HhaI	GCGC	2 cut(s)	612, 1246
Hin6I	GCGC	2 cut(s)	610, 1244
HinP1I	GCGC	2 cut(s)	610, 1244
HincII	GTYRAC	1 cut(s)	1117
HindII	GTYRAC	1 cut(s)	1117
HinfI	GANTC	5 cut(s)	319, 460, 677, 1113, 1196
HpaII	CCGG	2 cut(s)	369, 1284
HphI	GGTGA	3 cut(s)	436, 728, 835
Hpy166II	GTNNAC	6 cut(s)	199, 427, 571, 813, 991, 1117
Hpy188I	TCNGA	3 cut(s)	935, 951, 1159
Hpy188III	TCNNGA	5 cut(s)	73, 526, 641, 1079, 1200
Hpy8I	GTNNAC	6 cut(s)	199, 427, 571, 813, 991, 1117
HpyAV	CCTTC	5 cut(s)	70, 136, 205, 225, 1222
HpyCH4IV	ACGT	2 cut(s)	636, 747
HpyCH4V	TGCA	6 cut(s)	199, 571, 601, 770, 907, 966
HpyF3I	CTNAG	3 cut(s)	129, 654, 1052
HpySE526I	ACGT	2 cut(s)	636, 747
HspAI	GCGC	2 cut(s)	610, 1244
Kzo9I	GATC	7 cut(s)	16, 160, 279, 480, 847, 1165, 1236
LmnI	GCTCC	3 cut(s)	109, 1081, 1181
Lsp1109I	GCAGC	5 cut(s)	124, 133, 1044, 1047, 1103
LweI	GCATC	4 cut(s)	287, 779, 852, 945
MaeI	CTAG	2 cut(s)	332, 534
MaeII	ACGT	2 cut(s)	636, 747
MaeIII	GTNAC	7 cut(s)	397, 457, 536, 626, 641, 878, 1261
MalI	GATC	7 cut(s)	18, 162, 281, 482, 849, 1167, 1238
MboI	GATC	7 cut(s)	16, 160, 279, 480, 847, 1165, 1236
MboII	GAAGA	4 cut(s)	38, 503, 506, 514
MflI	RGATCY	1 cut(s)	1165
MhlI	GDGCHC	4 cut(s)	201, 346, 525, 573
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	4 cut(s)	63, 775, 900, 1147
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	2 cut(s)	454, 1122
MmeI	TCCRAC	1 cut(s)	855
Mox20I	TGGCCA	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	3 cut(s)	185, 564, 1293
MslI	CAYNNNNRTG	4 cut(s)	89, 252, 639, 855
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	475
MspI	CCGG	2 cut(s)	369, 1284
MspR9I	CCNGG	2 cut(s)	1058, 1310
MvaI	CCWGG	2 cut(s)	1058, 1310
NdeII	GATC	7 cut(s)	16, 160, 279, 480, 847, 1165, 1236
NheI	GCTAGC	1 cut(s)	331
NlaIV	GGNNCC	1 cut(s)	739
NmuCI	GTSAC	6 cut(s)	397, 457, 536, 641, 878, 1261
NsbI	TGCGCA	1 cut(s)	611
NspI	RCATGY	1 cut(s)	176
OliI	CACNNNNGTG	1 cut(s)	639
PagI	TCATGA	1 cut(s)	525
PfeI	GAWTC	3 cut(s)	319, 677, 1196
PkrI	GCNGC	6 cut(s)	139, 148, 1031, 1034, 1037, 1093
Ple19I	CGATCG	1 cut(s)	282
PleI	GAGTC	2 cut(s)	454, 1121
PpsI	GAGTC	2 cut(s)	454, 1121
Psp124BI	GAGCTC	1 cut(s)	525
Psp1406I	AACGTT	1 cut(s)	747
Psp6I	CCWGG	2 cut(s)	1056, 1308
PspFI	CCCAGC	1 cut(s)	1250
PspGI	CCWGG	2 cut(s)	1056, 1308
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	3 cut(s)	257, 1205, 1286
PsrI	GAACNNNNNNTAC	2 cut(s)	983, 1015
PstI	CTGCAG	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	1165
PvuI	CGATCG	1 cut(s)	282
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	4 cut(s)	89, 252, 639, 855
SacI	GAGCTC	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	185, 564, 1293
SatI	GCNGC	6 cut(s)	138, 147, 1030, 1033, 1036, 1092
Sau3AI	GATC	7 cut(s)	16, 160, 279, 480, 847, 1165, 1236
Sau96I	GGNCC	3 cut(s)	257, 1205, 1286
SchI	GAGTC	2 cut(s)	454, 1122
ScrFI	CCNGG	2 cut(s)	1058, 1310
SduI	GDGCHC	4 cut(s)	201, 346, 525, 573
SfaNI	GCATC	4 cut(s)	287, 779, 852, 945
SfcI	CTRYAG	1 cut(s)	599
SinI	GGWCC	2 cut(s)	257, 1286
SmiMI	CAYNNNNRTG	4 cut(s)	89, 252, 639, 855
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	4 cut(s)	63, 775, 900, 1147
SsiI	CCGC	4 cut(s)	448, 473, 816, 1029
SspMI	CTAG	2 cut(s)	332, 534
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	1056, 1308
StyI	CCWWGG	1 cut(s)	959
TaiI	ACGT	2 cut(s)	639, 750
TaqI	TCGA	4 cut(s)	282, 463, 1221, 1239
TasI	AATT	4 cut(s)	63, 775, 900, 1147
TauI	GCSGC	1 cut(s)	1032
TfiI	GAWTC	3 cut(s)	319, 677, 1196
Tru1I	TTAA	3 cut(s)	185, 564, 1293
Tru9I	TTAA	3 cut(s)	185, 564, 1293
TscAI	CASTG	1 cut(s)	1013
TseFI	GTSAC	6 cut(s)	397, 457, 536, 641, 878, 1261
TseI	GCWGC	5 cut(s)	137, 146, 1032, 1035, 1091
Tsp45I	GTSAC	6 cut(s)	397, 457, 536, 641, 878, 1261
TspDTI	ATGAA	4 cut(s)	224, 515, 912, 1202
TspRI	CASTG	1 cut(s)	1013
VneI	GTGCAC	2 cut(s)	197, 569
VpaK11BI	GGWCC	2 cut(s)	257, 1286
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	812
XspI	CTAG	2 cut(s)	332, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.