Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8469407.1

Orthogroup ID

OG0003744

Physical Location & Seq

Genomic Coordinates Reverse (-)

684 .. 1985

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8469407.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1123 bp

gattttggaagggaccaacaccacaaggaggcatcttgggcataagtacaaaggcccatgcacggccacaaaccctattgaccggtgctggaggtgcaatagcgaatggtccaagaaccggaagcagctcgccggttgcgtgaaagggttcgggcacaggacccgcggaggaaagcgcggtcccatctacgtcatcaccgattcctccgacgacgacatggcaaaccccaagccaggaactctccgccacgccgtgatccaaactggcccactttggatcatcttcaaacacagcatgaccatcaagttgaataaggagctacttgtgaccagccacaagaccatcgacggccgtggcgccaacgttcacatcgcccacggtgccggaatcaccctgcagttcgtccagaatgtgataatccacggccttcacatccacgacattgtgtcggtcggaggtggcctgatcagagactcattggaccacattggacttaggacccaaagtgatggagatggtatctccgtctttggatcctctcacatctggctcgaccatctctccatgtggaactgctacgatgggctcatcgacgtcatccagggatccaccgccattaccatctccaactgccacttcactcaccataacgacgtgatgcttttcggagcaagcgatatatttgaaggcgacaagatcatgcaaatcacggtggcgttcaaccacttcgggaagggcttgatccagagaatgccaaggtgcagacacggcttcttccacgttgtgaacaacgactacacccactggctcatgtacgccattggaggcagctcacacccaaccatcatcagccagggcaaccgctacgtcgccccaccaaaccctgcagcaaaggagatcacaaacaggaactacgcaaccgaggatgtgtggatgacatggcaatggagatcggaaggtgatctaatggagaacggagcctacttccgcgaatctggagtgccgagaacgggcggagagttcagccgccatgacatgatgaaggcaaagccaggcacatttgtgaggaggctcacacgctttgcgggtactcttggatgcaaggttggtaaggaatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C Pec_lyase_N

Protein Analysis

373

Amino Acids

41.64

Weight (kDa)

9.19

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01270 AT5G15110
fragaria_vesca	FvH4_5g15430 FvH4_6g49230
malus_domestica	MD06G1188600.v1.1 MD09G1047400.v1.1 MD14G1195000.v1.1 MD14G1195200.v1.1 MD17G1047500.v1.1
prunus_persica	Prupe.3G271600_v2.0.a1 Prupe.5G186900_v2.0.a1
pyrus_communis	pycom06g16740 pycom17g04230
rosa_chinensis	RchiOBHm_Chr2g0169091 RchiOBHm_Chr7g0180651
rosa_laevigata	RLG00000005246 RLG00000021833
rosa_multiflora	Rmu_co8469407.1_g000001 Rmu_co8473671.1_g000001 Rmu_ssc0000393.1_g000032
rosa_roxburghii	Rroxscaffold_2G00082470
rosa_rugosa	Rorug02G0536800 Rorug06G0434600
rosa_samantha	Rh2AG608700 Rh2BG621600 Rh2CG590300 Rh2DG632200 Rh7AG036000 Rh7BG035900 Rh7CG037500 Rh7DG036100
rosa_wichuraiana	Rw2G050470 Rw7G002960 Rw7G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	598
AccB1I	GGYRCC	2 cut(s)	357, 381
AccII	CGCG	3 cut(s)	166, 178, 991
AclI	AACGTT	1 cut(s)	364
AclWI	GGATC	7 cut(s)	251, 285, 529, 542, 601, 614, 737
AcoI	YGGCCR	2 cut(s)	64, 350
AcyI	GRCGYC	2 cut(s)	358, 595
AdeI	CACNNNGTG	2 cut(s)	254, 785
AfaI	GTAC	3 cut(s)	48, 816, 1091
AfiI	CCNNNNNNNGG	5 cut(s)	28, 62, 118, 234, 1011
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	4 cut(s)	287, 311, 687, 722
AhdI	GACNNNNNGTC	1 cut(s)	446
AjiI	CACGTC	1 cut(s)	656
AjnI	CCWGG	4 cut(s)	233, 601, 853, 1052
AjuI	GAANNNNNNNTTGG	2 cut(s)	621, 653
AleI	CACNNNNGTG	1 cut(s)	1062
AluBI	AGCT	3 cut(s)	128, 320, 832
AluI	AGCT	3 cut(s)	128, 320, 832
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	7 cut(s)	251, 285, 529, 542, 601, 614, 737
AoxI	GGCC	6 cut(s)	53, 64, 266, 350, 425, 461
ApeKI	GCWGC	3 cut(s)	125, 829, 888
AsiGI	ACCGGT	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	2 cut(s)	178, 360
AspS9I	GGNCC	8 cut(s)	13, 54, 109, 160, 180, 267, 482, 499
AsuHPI	GGTGA	4 cut(s)	188, 383, 636, 972
AvaII	GGWCC	6 cut(s)	13, 109, 160, 180, 482, 499
BaeGI	GKGCMC	1 cut(s)	157
BamHI	GGATCC	2 cut(s)	534, 606
BanI	GGYRCC	2 cut(s)	357, 381
BanII	GRGCYC	1 cut(s)	589
BbvI	GCAGC	3 cut(s)	137, 841, 900
BccI	CCATC	9 cut(s)	192, 309, 351, 504, 510, 565, 576, 630, 852
BceAI	ACGGC	6 cut(s)	79, 237, 337, 365, 440, 785
BciT130I	CCWGG	4 cut(s)	235, 603, 855, 1054
BclI	TGATCA	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	466
BfmI	CTRYAG	2 cut(s)	396, 886
BfoI	RGCGCY	1 cut(s)	361
BisI	GCNGC	4 cut(s)	126, 830, 889, 1028
BlsI	GCNGC	4 cut(s)	127, 831, 890, 1029
Bme1390I	CCNGG	4 cut(s)	235, 603, 855, 1054
Bme18I	GGWCC	6 cut(s)	13, 109, 160, 180, 482, 499
BmeRI	GACNNNNNGTC	1 cut(s)	446
BmgBI	CACGTC	1 cut(s)	656
BmgT120I	GGNCC	8 cut(s)	13, 54, 109, 160, 180, 267, 482, 499
BmiI	GGNNCC	9 cut(s)	14, 162, 182, 359, 383, 501, 536, 608, 980
BmrFI	CCNGG	4 cut(s)	235, 603, 855, 1054
BmsI	GCATC	3 cut(s)	41, 649, 1089
BpmI	CTGGAG	2 cut(s)	110, 1018
BsaHI	GRCGYC	2 cut(s)	358, 595
BsaJI	CCNNGG	8 cut(s)	164, 353, 377, 422, 602, 756, 854, 922
BsaWI	WCCGGW	2 cut(s)	82, 118
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 62, 118, 234, 1011
Bse118I	RCCGGY	2 cut(s)	82, 132
Bse1I	ACTGG	2 cut(s)	269, 810
Bse3DI	GCAATG	1 cut(s)	951
BseBI	CCWGG	4 cut(s)	235, 603, 855, 1054
BseDI	CCNNGG	8 cut(s)	164, 353, 377, 422, 602, 756, 854, 922
BseGI	GGATG	5 cut(s)	433, 598, 932, 940, 1104
BseLI	CCNNNNNNNGG	5 cut(s)	28, 62, 118, 234, 1011
BseMI	GCAATG	1 cut(s)	951
BseNI	ACTGG	2 cut(s)	269, 810
BseRI	GAGGAG	1 cut(s)	1082
BseSI	GKGCMC	1 cut(s)	157
BseX3I	CGGCCG	1 cut(s)	350
BseXI	GCAGC	3 cut(s)	137, 841, 900
BsgI	GTGCAG	1 cut(s)	782
Bsh1236I	CGCG	3 cut(s)	166, 178, 991
Bsh1285I	CGRYCG	2 cut(s)	353, 454
BshFI	GGCC	6 cut(s)	55, 66, 268, 352, 427, 463
BshNI	GGYRCC	2 cut(s)	357, 381
BshTI	ACCGGT	1 cut(s)	82
BsiEI	CGRYCG	2 cut(s)	353, 454
BsiSI	CCGG	4 cut(s)	83, 119, 133, 385
BslFI	GGGAC	2 cut(s)	26, 166
BslI	CCNNNNNNNGG	5 cut(s)	28, 62, 118, 234, 1011
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	26, 166
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	6 cut(s)	55, 66, 268, 352, 427, 463
Bsp1286I	GDGCHC	2 cut(s)	157, 589
BspANI	GGCC	6 cut(s)	55, 66, 268, 352, 427, 463
BspFNI	CGCG	3 cut(s)	166, 178, 991
BspLI	GGNNCC	9 cut(s)	14, 162, 182, 359, 383, 501, 536, 608, 980
BspMAI	CTGCAG	2 cut(s)	400, 890
BspPI	GGATC	7 cut(s)	251, 285, 529, 542, 601, 614, 737
BspT107I	GGYRCC	2 cut(s)	357, 381
BsrDI	GCAATG	1 cut(s)	951
BsrFI	RCCGGY	2 cut(s)	82, 132
BsrI	ACTGG	2 cut(s)	269, 810
BssAI	RCCGGY	2 cut(s)	82, 132
BssECI	CCNNGG	8 cut(s)	164, 353, 377, 422, 602, 756, 854, 922
BssNI	GRCGYC	2 cut(s)	358, 595
BssT1I	CCWWGG	1 cut(s)	756
Bst2UI	CCWGG	4 cut(s)	235, 603, 855, 1054
Bst4CI	ACNGT	2 cut(s)	381, 713
BstACI	GRCGYC	2 cut(s)	358, 595
BstC8I	GCNNGC	2 cut(s)	130, 674
BstDEI	CTNAG	1 cut(s)	495
BstDSI	CCRYGG	4 cut(s)	164, 353, 377, 422
BstF5I	GGATG	5 cut(s)	433, 598, 932, 940, 1104
BstFNI	CGCG	3 cut(s)	166, 178, 991
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	2 cut(s)	178, 360
BstMAI	GTCTC	1 cut(s)	466
BstMCI	CGRYCG	2 cut(s)	353, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 94, 381, 769
BstNI	CCWGG	4 cut(s)	235, 603, 855, 1054
BstSCI	CCNGG	4 cut(s)	233, 601, 853, 1052
BstSFI	CTRYAG	2 cut(s)	396, 886
BstSLI	GKGCMC	1 cut(s)	157
BstUI	CGCG	3 cut(s)	166, 178, 991
BstV1I	GCAGC	3 cut(s)	137, 841, 900
BstX2I	RGATCY	2 cut(s)	534, 606
BstXI	CCANNNNNNTGG	1 cut(s)	510
BstYI	RGATCY	2 cut(s)	534, 606
BstZI	CGGCCG	1 cut(s)	350
BsuRI	GGCC	6 cut(s)	55, 66, 268, 352, 427, 463
BtgI	CCRYGG	4 cut(s)	164, 353, 377, 422
BtgZI	GCGATG	1 cut(s)	356
BtrI	CACGTC	1 cut(s)	656
BtsCI	GGATG	5 cut(s)	433, 598, 932, 940, 1104
BtsIMutI	CAGTG	1 cut(s)	803
Cac8I	GCNNGC	2 cut(s)	130, 674
CfoI	GCGC	2 cut(s)	178, 360
Cfr10I	RCCGGY	2 cut(s)	82, 132
Cfr13I	GGNCC	8 cut(s)	13, 54, 109, 160, 180, 267, 482, 499
Cfr42I	CCGCGG	1 cut(s)	167
Csp6I	GTAC	3 cut(s)	47, 815, 1090
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	9 cut(s)	58, 218, 296, 566, 701, 812, 940, 1032, 1037
CviQI	GTAC	3 cut(s)	47, 815, 1090
DdeI	CTNAG	1 cut(s)	495
DinI	GGCGCC	1 cut(s)	359
DraIII	CACNNNGTG	2 cut(s)	254, 785
DriI	GACNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	2 cut(s)	64, 350
EagI	CGGCCG	1 cut(s)	350
Eam1105I	GACNNNNNGTC	1 cut(s)	446
EciI	GGCGGA	2 cut(s)	234, 1030
EclXI	CGGCCG	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	756
Eco24I	GRGCYC	1 cut(s)	589
Eco47I	GGWCC	6 cut(s)	13, 109, 160, 180, 482, 499
Eco52I	CGGCCG	1 cut(s)	350
EcoO109I	RGGNCCY	2 cut(s)	160, 499
EcoRII	CCWGG	4 cut(s)	233, 601, 853, 1052
EcoT14I	CCWWGG	1 cut(s)	756
EcoT38I	GRGCYC	1 cut(s)	589
EgeI	GGCGCC	1 cut(s)	359
EheI	GGCGCC	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	756
FaeI	CATG	9 cut(s)	61, 221, 299, 569, 704, 815, 943, 1035, 1040
FaqI	GGGAC	2 cut(s)	26, 166
FatI	CATG	9 cut(s)	57, 217, 295, 565, 700, 811, 939, 1031, 1036
FauI	CCCGC	2 cut(s)	171, 1079
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	4 cut(s)	126, 830, 889, 1028
FokI	GGATG	5 cut(s)	420, 585, 939, 947, 1111
FriOI	GRGCYC	1 cut(s)	589
Fsp4HI	GCNGC	4 cut(s)	126, 830, 889, 1028
GlaI	GCGC	2 cut(s)	177, 359
GluI	GCNGC	4 cut(s)	126, 830, 889, 1028
GsuI	CTGGAG	2 cut(s)	110, 1018
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	6 cut(s)	55, 66, 268, 352, 427, 463
HapII	CCGG	4 cut(s)	83, 119, 133, 385
HhaI	GCGC	2 cut(s)	178, 360
Hin1I	GRCGYC	2 cut(s)	358, 595
Hin1II	CATG	9 cut(s)	61, 221, 299, 569, 704, 815, 943, 1035, 1040
Hin6I	GCGC	2 cut(s)	176, 358
HinP1I	GCGC	2 cut(s)	176, 358
HinfI	GANTC	4 cut(s)	201, 388, 474, 993
HpaII	CCGG	4 cut(s)	83, 119, 133, 385
HphI	GGTGA	4 cut(s)	188, 383, 636, 972
Hpy166II	GTNNAC	2 cut(s)	368, 788
Hpy188I	TCNGA	5 cut(s)	209, 456, 471, 669, 956
Hpy188III	TCNNGA	4 cut(s)	407, 731, 746, 997
Hpy8I	GTNNAC	2 cut(s)	368, 788
Hpy99I	CGWCG	6 cut(s)	213, 216, 351, 597, 657, 873
HpyAV	CCTTC	6 cut(s)	3, 438, 681, 728, 951, 1037
HpyCH4III	ACNGT	2 cut(s)	381, 713
HpyCH4IV	ACGT	6 cut(s)	190, 364, 595, 655, 781, 868
HpyCH4V	TGCA	7 cut(s)	61, 97, 398, 704, 763, 888, 1102
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 94, 381, 769
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	6 cut(s)	190, 364, 595, 655, 781, 868
Hsp92I	GRCGYC	2 cut(s)	358, 595
Hsp92II	CATG	9 cut(s)	61, 221, 299, 569, 704, 815, 943, 1035, 1040
HspAI	GCGC	2 cut(s)	176, 358
KasI	GGCGCC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	466
KspI	CCGCGG	1 cut(s)	167
LmnI	GCTCC	3 cut(s)	317, 669, 978
Lsp1109I	GCAGC	3 cut(s)	137, 841, 900
LweI	GCATC	3 cut(s)	41, 649, 1089
MaeII	ACGT	6 cut(s)	190, 364, 595, 655, 781, 868
MaeIII	GTNAC	1 cut(s)	326
MboII	GAAGA	2 cut(s)	275, 767
MflI	RGATCY	2 cut(s)	534, 606
MhlI	GDGCHC	2 cut(s)	157, 589
Mly113I	GGCGCC	1 cut(s)	358
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	3 cut(s)	232, 434, 652
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	1 cut(s)	1121
MslI	CAYNNNNRTG	2 cut(s)	944, 1062
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	4 cut(s)	83, 119, 133, 385
MspR9I	CCNGG	4 cut(s)	235, 603, 855, 1054
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	4 cut(s)	235, 603, 855, 1054
MvnI	CGCG	3 cut(s)	166, 178, 991
MwoI	GCNNNNNNNGC	4 cut(s)	38, 94, 381, 769
NarI	GGCGCC	1 cut(s)	358
NlaIII	CATG	9 cut(s)	61, 221, 299, 569, 704, 815, 943, 1035, 1040
NlaIV	GGNNCC	9 cut(s)	14, 162, 182, 359, 383, 501, 536, 608, 980
NmeAIII	GCCGAG	1 cut(s)	1030
NmuCI	GTSAC	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	1062
PcsI	WCGNNNNNNNCGW	3 cut(s)	136, 196, 673
PctI	GAATGC	1 cut(s)	757
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	201, 388, 993
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	127, 831, 890, 1029
PleI	GAGTC	1 cut(s)	468
PluTI	GGCGCC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	468
PpuMI	RGGWCCY	2 cut(s)	160, 499
Psp1406I	AACGTT	1 cut(s)	364
Psp5II	RGGWCCY	2 cut(s)	160, 499
Psp6I	CCWGG	4 cut(s)	233, 601, 853, 1052
PspGI	CCWGG	4 cut(s)	233, 601, 853, 1052
PspN4I	GGNNCC	9 cut(s)	14, 162, 182, 359, 383, 501, 536, 608, 980
PspPI	GGNCC	8 cut(s)	13, 54, 109, 160, 180, 267, 482, 499
PspPPI	RGGWCCY	2 cut(s)	160, 499
PsrI	GAACNNNNNNTAC	4 cut(s)	780, 812, 966, 998
PstI	CTGCAG	2 cut(s)	400, 890
PsuI	RGATCY	2 cut(s)	534, 606
RsaI	GTAC	3 cut(s)	48, 816, 1091
RsaNI	GTAC	3 cut(s)	47, 815, 1090
RseI	CAYNNNNRTG	2 cut(s)	944, 1062
SacII	CCGCGG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	1121
SatI	GCNGC	4 cut(s)	126, 830, 889, 1028
Sau96I	GGNCC	8 cut(s)	13, 54, 109, 160, 180, 267, 482, 499
SchI	GAGTC	1 cut(s)	468
ScrFI	CCNGG	4 cut(s)	235, 603, 855, 1054
SduI	GDGCHC	2 cut(s)	157, 589
SfaNI	GCATC	3 cut(s)	41, 649, 1089
SfcI	CTRYAG	2 cut(s)	396, 886
SfoI	GGCGCC	1 cut(s)	359
Sfr303I	CCGCGG	1 cut(s)	167
SgrBI	CCGCGG	1 cut(s)	167
SinI	GGWCC	6 cut(s)	13, 109, 160, 180, 482, 499
SmiMI	CAYNNNNRTG	2 cut(s)	944, 1062
SspDI	GGCGCC	1 cut(s)	357
StyD4I	CCNGG	4 cut(s)	233, 601, 853, 1052
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	2 cut(s)	381, 713
TaiI	ACGT	6 cut(s)	193, 367, 598, 658, 784, 871
TaqI	TCGA	3 cut(s)	346, 553, 592
TaqII	GACCGA	1 cut(s)	440
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	1030
TfiI	GAWTC	3 cut(s)	201, 388, 993
Tru1I	TTAA	1 cut(s)	1121
Tru9I	TTAA	1 cut(s)	1121
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	3 cut(s)	125, 829, 888
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	1056
TspGWI	ACGGA	2 cut(s)	515, 991
TspRI	CASTG	1 cut(s)	810
VpaK11BI	GGWCC	6 cut(s)	13, 109, 160, 180, 482, 499
XmnI	GAANNNNTTC	1 cut(s)	147
ZraI	GACGTC	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.