Rmu_ssc0000393.1_g000032

Pectate lyase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000393.1
Physical Location & Seq
Reverse (-)
181789 .. 183349
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000393.1_g000032.1.cds

Sequence Viewer

Length: 1329 bp
atgaaggtcagtttagtgctgtttatgtgctcattctgcgtaatacttccatgcctaaaagcgggcgcagattccgacaatatcacaattgcggtgttcgatcctgtccttaaggagcgggagcatcaggccgaggtagctgccctccaggcctatcaacccaaccccgaagcagttgcagatgacctacttcaagatgttgaaacgattttggaagggaccaacaccacaaggaggcatcttgggcataagtacaaaggcccatgcacggccacaaaccctattgaccggtgctggaggtgcaatagcgaatggtccaagaaccggaagcagctcgccggttgcgtgaaagggttcgggcacaggacccgcggaggaaagcgcggtcccatctacgtcatcaccgattcctccgacgacgacatggcaaaccccaagccaggaactctccgccacgccgtgatccaaactggcccactttggatcatcttcaaacacagcatgaccatcaagttgaataaggagctacttgtgaccagccacaagaccatcgacggccgtggcgccaacgttcacatcgcccacggtgccggaatcaccctgcagttcgtccagaatgtgataatccacggccttcacatccacgacattgtgtcggtcggaggtggcctgatcagagactcattggaccacattggacttaggacccaaagtgatggagatggtatctccgtctttggatcctctcacatctggctcgaccatctctccatgtggaactgctacgatgggctcatcgacgtcatccagggatccaccgccattaccatctccaactgccacttcactcaccataacgacgtgatgcttttcggagcaagcgatatatttgaaggcgacaagatcatgcaaatcacggtggcgttcaaccacttcgggaagggcttgatccagagaatgccaaggtgcagacacggcttcttccacgttgtgaacaacgactacacccactggctcatgtacgccattggaggcagctcacacccaaccatcatcagccagggcaaccgctacgtcgccccaccaaaccctgcagcaaaggagatcacaaacaggaactacgcaaccgaggatgtgtggatgacatggcaatggagatcggaaggtgatctaatggagaacggagcctacttccgcgaatctggagtgccgagaacgggcggagagttcagccgccatgacatgatgaaggcaaagccaggcacatttgtgaggaggctcacacgctttgcgggtactcttggatgcaaggttggtaaggaatgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

442

Amino Acids

49.16

Weight (kDa)

8.22

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 804
AccB1I GGYRCC 2 cut(s) 563, 587
AccBSI CCGCTC 1 cut(s) 118
AccII CGCG 3 cut(s) 372, 384, 1197
AclI AACGTT 1 cut(s) 570
AclWI GGATC 8 cut(s) 95, 457, 491, 735, 748, 807, 820, 943
AcoI YGGCCR 2 cut(s) 270, 556
AcyI GRCGYC 2 cut(s) 564, 801
AdeI CACNNNGTG 2 cut(s) 460, 991
AfaI GTAC 3 cut(s) 254, 1022, 1297
AfiI CCNNNNNNNGG 6 cut(s) 61, 234, 268, 324, 440, 1217
AflII CTTAAG 1 cut(s) 110
AgeI ACCGGT 1 cut(s) 288
AgsI TTSAA 6 cut(s) 194, 203, 493, 517, 893, 928
AhdI GACNNNNNGTC 1 cut(s) 652
AjiI CACGTC 1 cut(s) 862
AjnI CCWGG 5 cut(s) 147, 439, 807, 1059, 1258
AjuI GAANNNNNNNTTGG 2 cut(s) 827, 859
AleI CACNNNNGTG 1 cut(s) 1268
AluBI AGCT 4 cut(s) 140, 334, 526, 1038
AluI AGCT 4 cut(s) 140, 334, 526, 1038
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 672
AlwI GGATC 8 cut(s) 95, 457, 491, 735, 748, 807, 820, 943
AoxI GGCC 8 cut(s) 129, 150, 259, 270, 472, 556, 631, 667
ApeKI GCWGC 4 cut(s) 140, 331, 1035, 1094
AsiGI ACCGGT 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 353
AspLEI GCGC 3 cut(s) 68, 384, 566
AspS9I GGNCC 8 cut(s) 219, 260, 315, 366, 386, 473, 688, 705
AsuHPI GGTGA 4 cut(s) 394, 589, 842, 1178
AvaII GGWCC 6 cut(s) 219, 315, 366, 386, 688, 705
BaeGI GKGCMC 1 cut(s) 363
BamHI GGATCC 2 cut(s) 740, 812
BanI GGYRCC 2 cut(s) 563, 587
BanII GRGCYC 1 cut(s) 795
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 4 cut(s) 127, 343, 1047, 1106
BccI CCATC 9 cut(s) 398, 515, 557, 710, 716, 771, 782, 836, 1058
BceAI ACGGC 6 cut(s) 285, 443, 543, 571, 646, 991
BcgI CGANNNNNNTGC 4 cut(s) 122, 156, 158, 192
BciT130I CCWGG 5 cut(s) 149, 441, 809, 1061, 1260
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 1 cut(s) 672
BfmI CTRYAG 2 cut(s) 602, 1092
BfoI RGCGCY 1 cut(s) 567
BfrI CTTAAG 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 5 cut(s) 141, 332, 1036, 1095, 1234
BlsI GCNGC 5 cut(s) 142, 333, 1037, 1096, 1235
Bme1390I CCNGG 5 cut(s) 149, 441, 809, 1061, 1260
Bme18I GGWCC 6 cut(s) 219, 315, 366, 386, 688, 705
BmeRI GACNNNNNGTC 1 cut(s) 652
BmgBI CACGTC 1 cut(s) 862
BmgT120I GGNCC 8 cut(s) 219, 260, 315, 366, 386, 473, 688, 705
BmiI GGNNCC 9 cut(s) 220, 368, 388, 565, 589, 707, 742, 814, 1186
BmrFI CCNGG 5 cut(s) 149, 441, 809, 1061, 1260
BmsI GCATC 4 cut(s) 133, 247, 855, 1295
BpmI CTGGAG 3 cut(s) 131, 316, 1224
BsaHI GRCGYC 2 cut(s) 564, 801
BsaJI CCNNGG 9 cut(s) 132, 370, 559, 583, 628, 808, 962, 1060, 1128
BsaWI WCCGGW 2 cut(s) 288, 324
BsaXI ACNNNNNCTCC 2 cut(s) 752, 782
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 234, 268, 324, 440, 1217
Bse118I RCCGGY 2 cut(s) 288, 338
Bse1I ACTGG 2 cut(s) 475, 1016
Bse3DI GCAATG 1 cut(s) 1157
BseBI CCWGG 5 cut(s) 149, 441, 809, 1061, 1260
BseDI CCNNGG 9 cut(s) 132, 370, 559, 583, 628, 808, 962, 1060, 1128
BseGI GGATG 5 cut(s) 639, 804, 1138, 1146, 1310
BseLI CCNNNNNNNGG 6 cut(s) 61, 234, 268, 324, 440, 1217
BseMI GCAATG 1 cut(s) 1157
BseNI ACTGG 2 cut(s) 475, 1016
BseRI GAGGAG 1 cut(s) 1288
BseSI GKGCMC 1 cut(s) 363
BseX3I CGGCCG 1 cut(s) 556
BseXI GCAGC 4 cut(s) 127, 343, 1047, 1106
BsgI GTGCAG 1 cut(s) 988
Bsh1236I CGCG 3 cut(s) 372, 384, 1197
Bsh1285I CGRYCG 2 cut(s) 559, 660
BshFI GGCC 8 cut(s) 131, 152, 261, 272, 474, 558, 633, 669
BshNI GGYRCC 2 cut(s) 563, 587
BshTI ACCGGT 1 cut(s) 288
BsiEI CGRYCG 2 cut(s) 559, 660
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 4 cut(s) 289, 325, 339, 591
BslFI GGGAC 2 cut(s) 232, 372
BslI CCNNNNNNNGG 6 cut(s) 61, 234, 268, 324, 440, 1217
BsmAI GTCTC 1 cut(s) 672
BsmFI GGGAC 2 cut(s) 232, 372
BsmI GAATGC 1 cut(s) 963
BsnI GGCC 8 cut(s) 131, 152, 261, 272, 474, 558, 633, 669
Bsp1286I GDGCHC 3 cut(s) 32, 363, 795
BspANI GGCC 8 cut(s) 131, 152, 261, 272, 474, 558, 633, 669
BspFNI CGCG 3 cut(s) 372, 384, 1197
BspLI GGNNCC 9 cut(s) 220, 368, 388, 565, 589, 707, 742, 814, 1186
BspMAI CTGCAG 2 cut(s) 606, 1096
BspPI GGATC 8 cut(s) 95, 457, 491, 735, 748, 807, 820, 943
BspT107I GGYRCC 2 cut(s) 563, 587
BspTI CTTAAG 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 1157
BsrFI RCCGGY 2 cut(s) 288, 338
BsrI ACTGG 2 cut(s) 475, 1016
BssAI RCCGGY 2 cut(s) 288, 338
BssECI CCNNGG 9 cut(s) 132, 370, 559, 583, 628, 808, 962, 1060, 1128
BssNI GRCGYC 2 cut(s) 564, 801
BssT1I CCWWGG 1 cut(s) 962
Bst2UI CCWGG 5 cut(s) 149, 441, 809, 1061, 1260
Bst4CI ACNGT 2 cut(s) 587, 919
BstACI GRCGYC 2 cut(s) 564, 801
BstAFI CTTAAG 1 cut(s) 110
BstC8I GCNNGC 3 cut(s) 64, 336, 880
BstDEI CTNAG 1 cut(s) 701
BstDSI CCRYGG 4 cut(s) 370, 559, 583, 628
BstF5I GGATG 5 cut(s) 639, 804, 1138, 1146, 1310
BstFNI CGCG 3 cut(s) 372, 384, 1197
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 3 cut(s) 68, 384, 566
BstMAI GTCTC 1 cut(s) 672
BstMCI CGRYCG 2 cut(s) 559, 660
BstMWI GCNNNNNNNGC 7 cut(s) 36, 137, 149, 244, 300, 587, 975
BstNI CCWGG 5 cut(s) 149, 441, 809, 1061, 1260
BstSCI CCNGG 5 cut(s) 147, 439, 807, 1059, 1258
BstSFI CTRYAG 2 cut(s) 602, 1092
BstSLI GKGCMC 1 cut(s) 363
BstUI CGCG 3 cut(s) 372, 384, 1197
BstV1I GCAGC 4 cut(s) 127, 343, 1047, 1106
BstX2I RGATCY 2 cut(s) 740, 812
BstXI CCANNNNNNTGG 1 cut(s) 716
BstYI RGATCY 2 cut(s) 740, 812
BstZI CGGCCG 1 cut(s) 556
BsuRI GGCC 8 cut(s) 131, 152, 261, 272, 474, 558, 633, 669
BtgI CCRYGG 4 cut(s) 370, 559, 583, 628
BtgZI GCGATG 1 cut(s) 562
BtrI CACGTC 1 cut(s) 862
BtsCI GGATG 5 cut(s) 639, 804, 1138, 1146, 1310
BtsIMutI CAGTG 1 cut(s) 1009
Cac8I GCNNGC 3 cut(s) 64, 336, 880
CfoI GCGC 3 cut(s) 68, 384, 566
Cfr10I RCCGGY 2 cut(s) 288, 338
Cfr13I GGNCC 8 cut(s) 219, 260, 315, 366, 386, 473, 688, 705
Cfr42I CCGCGG 1 cut(s) 373
Csp6I GTAC 3 cut(s) 253, 1021, 1296
CspAI ACCGGT 1 cut(s) 288
CviQI GTAC 3 cut(s) 253, 1021, 1296
DdeI CTNAG 1 cut(s) 701
DinI GGCGCC 1 cut(s) 565
DraIII CACNNNGTG 2 cut(s) 460, 991
DriI GACNNNNNGTC 1 cut(s) 652
EaeI YGGCCR 2 cut(s) 270, 556
EagI CGGCCG 1 cut(s) 556
Eam1105I GACNNNNNGTC 1 cut(s) 652
EciI GGCGGA 2 cut(s) 440, 1236
EclXI CGGCCG 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 962
Eco147I AGGCCT 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 795
Eco47I GGWCC 6 cut(s) 219, 315, 366, 386, 688, 705
Eco52I CGGCCG 1 cut(s) 556
EcoO109I RGGNCCY 2 cut(s) 366, 705
EcoRII CCWGG 5 cut(s) 147, 439, 807, 1059, 1258
EcoT14I CCWWGG 1 cut(s) 962
EcoT38I GRGCYC 1 cut(s) 795
EgeI GGCGCC 1 cut(s) 565
EheI GGCGCC 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 962
FaqI GGGAC 2 cut(s) 232, 372
FauI CCCGC 4 cut(s) 55, 111, 377, 1285
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 5 cut(s) 141, 332, 1036, 1095, 1234
FokI GGATG 5 cut(s) 626, 791, 1145, 1153, 1317
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 5 cut(s) 141, 332, 1036, 1095, 1234
GlaI GCGC 3 cut(s) 67, 383, 565
GluI GCNGC 5 cut(s) 141, 332, 1036, 1095, 1234
GsuI CTGGAG 3 cut(s) 131, 316, 1224
HaeII RGCGCY 1 cut(s) 567
HaeIII GGCC 8 cut(s) 131, 152, 261, 272, 474, 558, 633, 669
HapII CCGG 4 cut(s) 289, 325, 339, 591
HhaI GCGC 3 cut(s) 68, 384, 566
Hin1I GRCGYC 2 cut(s) 564, 801
Hin6I GCGC 3 cut(s) 66, 382, 564
HinP1I GCGC 3 cut(s) 66, 382, 564
HinfI GANTC 5 cut(s) 71, 407, 594, 680, 1199
HpaII CCGG 4 cut(s) 289, 325, 339, 591
HphI GGTGA 4 cut(s) 394, 589, 842, 1178
Hpy166II GTNNAC 2 cut(s) 574, 994
Hpy188I TCNGA 6 cut(s) 76, 415, 662, 677, 875, 1162
Hpy188III TCNNGA 5 cut(s) 194, 613, 937, 952, 1203
Hpy8I GTNNAC 2 cut(s) 574, 994
Hpy99I CGWCG 6 cut(s) 419, 422, 557, 803, 863, 1079
HpyAV CCTTC 6 cut(s) 209, 644, 887, 934, 1157, 1243
HpyCH4III ACNGT 2 cut(s) 587, 919
HpyCH4IV ACGT 6 cut(s) 396, 570, 801, 861, 987, 1074
HpyCH4V TGCA 8 cut(s) 179, 267, 303, 604, 910, 969, 1094, 1308
HpyF10VI GCNNNNNNNGC 7 cut(s) 36, 137, 149, 244, 300, 587, 975
HpyF3I CTNAG 1 cut(s) 701
HpySE526I ACGT 6 cut(s) 396, 570, 801, 861, 987, 1074
Hsp92I GRCGYC 2 cut(s) 564, 801
HspAI GCGC 3 cut(s) 66, 382, 564
KasI GGCGCC 1 cut(s) 563
Ksp22I TGATCA 1 cut(s) 672
KspI CCGCGG 1 cut(s) 373
LmnI GCTCC 5 cut(s) 115, 121, 523, 875, 1184
Lsp1109I GCAGC 4 cut(s) 127, 343, 1047, 1106
LweI GCATC 4 cut(s) 133, 247, 855, 1295
MaeII ACGT 6 cut(s) 396, 570, 801, 861, 987, 1074
MaeIII GTNAC 1 cut(s) 532
MbiI CCGCTC 1 cut(s) 118
MboII GAAGA 2 cut(s) 481, 973
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 2 cut(s) 740, 812
MhlI GDGCHC 3 cut(s) 32, 363, 795
MluCI AATT 1 cut(s) 87
Mly113I GGCGCC 1 cut(s) 564
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 4 cut(s) 99, 438, 640, 858
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 2 cut(s) 111, 1327
MslI CAYNNNNRTG 2 cut(s) 1150, 1268
MspA1I CMGCKG 1 cut(s) 372
MspCI CTTAAG 1 cut(s) 110
MspI CCGG 4 cut(s) 289, 325, 339, 591
MspR9I CCNGG 5 cut(s) 149, 441, 809, 1061, 1260
MunI CAATTG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 963
MvaI CCWGG 5 cut(s) 149, 441, 809, 1061, 1260
MvnI CGCG 3 cut(s) 372, 384, 1197
MwoI GCNNNNNNNGC 7 cut(s) 36, 137, 149, 244, 300, 587, 975
NarI GGCGCC 1 cut(s) 564
NlaIV GGNNCC 9 cut(s) 220, 368, 388, 565, 589, 707, 742, 814, 1186
NmeAIII GCCGAG 2 cut(s) 157, 1236
NmuCI GTSAC 1 cut(s) 532
OliI CACNNNNGTG 1 cut(s) 1268
PceI AGGCCT 1 cut(s) 152
PcsI WCGNNNNNNNCGW 3 cut(s) 342, 402, 879
PctI GAATGC 1 cut(s) 963
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 4 cut(s) 71, 407, 594, 1199
PinAI ACCGGT 1 cut(s) 288
PkrI GCNGC 5 cut(s) 142, 333, 1037, 1096, 1235
PleI GAGTC 1 cut(s) 674
PluTI GGCGCC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 674
PpuMI RGGWCCY 2 cut(s) 366, 705
Psp1406I AACGTT 1 cut(s) 570
Psp5II RGGWCCY 2 cut(s) 366, 705
Psp6I CCWGG 5 cut(s) 147, 439, 807, 1059, 1258
PspGI CCWGG 5 cut(s) 147, 439, 807, 1059, 1258
PspN4I GGNNCC 9 cut(s) 220, 368, 388, 565, 589, 707, 742, 814, 1186
PspPI GGNCC 8 cut(s) 219, 260, 315, 366, 386, 473, 688, 705
PspPPI RGGWCCY 2 cut(s) 366, 705
PsrI GAACNNNNNNTAC 4 cut(s) 986, 1018, 1172, 1204
PstI CTGCAG 2 cut(s) 606, 1096
PsuI RGATCY 2 cut(s) 740, 812
RsaI GTAC 3 cut(s) 254, 1022, 1297
RsaNI GTAC 3 cut(s) 253, 1021, 1296
RseI CAYNNNNRTG 2 cut(s) 1150, 1268
SacII CCGCGG 1 cut(s) 373
SaqAI TTAA 2 cut(s) 111, 1327
SatI GCNGC 5 cut(s) 141, 332, 1036, 1095, 1234
Sau96I GGNCC 8 cut(s) 219, 260, 315, 366, 386, 473, 688, 705
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 5 cut(s) 149, 441, 809, 1061, 1260
SduI GDGCHC 3 cut(s) 32, 363, 795
SfaNI GCATC 4 cut(s) 133, 247, 855, 1295
SfcI CTRYAG 2 cut(s) 602, 1092
SfoI GGCGCC 1 cut(s) 565
Sfr303I CCGCGG 1 cut(s) 373
SgrBI CCGCGG 1 cut(s) 373
SinI GGWCC 6 cut(s) 219, 315, 366, 386, 688, 705
SmiMI CAYNNNNRTG 2 cut(s) 1150, 1268
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 87
SseBI AGGCCT 1 cut(s) 152
SspDI GGCGCC 1 cut(s) 563
StuI AGGCCT 1 cut(s) 152
StyD4I CCNGG 5 cut(s) 147, 439, 807, 1059, 1258
StyI CCWWGG 1 cut(s) 962
TaaI ACNGT 2 cut(s) 587, 919
TaiI ACGT 6 cut(s) 399, 573, 804, 864, 990, 1077
TaqI TCGA 4 cut(s) 99, 552, 759, 798
TaqII GACCGA 1 cut(s) 646
TasI AATT 1 cut(s) 87
TatI WGTACW 1 cut(s) 252
TauI GCSGC 1 cut(s) 1236
TfiI GAWTC 4 cut(s) 71, 407, 594, 1199
Tru1I TTAA 2 cut(s) 111, 1327
Tru9I TTAA 2 cut(s) 111, 1327
TscAI CASTG 1 cut(s) 1016
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 4 cut(s) 140, 331, 1035, 1094
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 2 cut(s) 17, 1262
TspGWI ACGGA 2 cut(s) 721, 1197
TspRI CASTG 1 cut(s) 1016
Vha464I CTTAAG 1 cut(s) 110
VpaK11BI GGWCC 6 cut(s) 219, 315, 366, 386, 688, 705
XmnI GAANNNNTTC 1 cut(s) 353
ZraI GACGTC 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.