Prupe.5G186900_v2.0.a1

Pectate lyase-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
15441814 .. 15444202
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G186900.1

Sequence Viewer

Length: 1323 bp
ATGGCAATGGAAGCTGAGAAGCTAAATGTTGTGATTTTATGTGTTTTTGTAATTGCAATAACAATCCCAACAACAGTGAGGGCAAACATTGCGGATTTTGATGAGCATTGGCAGCAGAGAGCCGCAGAAGCCAAGAAGGCCGCCCATGAAGCCTACCATGATGATCCTATAGCAGTCACCGAGCATTTCAACAAGCAAGTCCTTGACACCTTCGATTATGCAAACAACACAAGAAGGAACTTGAACCAGAAGTACAAGGGTCCATGCATGGCTACAAACCCTATCGATCGTTGTTGGCGATGCGATCCAAACTGGGAAAAAAATCGCAAGAGGCTAGCCGATTGTGCCCTTGGCTTTGGGCGCAAGGCAACTGGAGGGAAACTTGGACCAATATATGTGGTCACAGATAACACCGACGCTGACCTAGTGAACCCGAAACCCGGCACACTCCGCCACGCTGTGATTCAAAATGGGCCACTTTGGATCATATTTGCTCGGGACATGAGGATAAAGCTGACCGAAGAGCTTCTGGTGGCCAGTGACAAGACCATTGATGCACGAGGTGCTAACGTGCACATCCTCGATGGCGCCCAAATTTCATTGCAGTTTGTGAAGAATGTGATCATCACCAACCTCCACATCCATAACAACAAGCCTGGAAATGGCGGCATGATTAGGGACTCTATCAATCACTTTGGACAGCGCACGCGTAGCGACGGAGATGGAATATCCATGTTTGGAGCCACAAACGTTTGGATAGACCATGTCTCTTTGTCAAATTGCGCAGATGGGCTCATTGATGCCATCCAAGGCTCTACGGCCATCACCATATCCAACTGTCACCTCACCAATCATAATGATGTGATGTTGTTTGGTTCAAGTGATAGCAACTCTCAGGATCAAGTGATGCAGATAACTCTGGCTTTCAACCATTTCGGGAAGGGGTTGGTTCAGCGGATGCCAAGGTGCCGGTGGGGATTTTTCCATGTCGTCAACAACGACTACACTCATTGGCTTATGTATGCCATTGGTGGCAGCCAACACCCTACCATAATTAGCCAGGGCAACCGGTTCATTGCTCCGTCGAACCAAGCGACTAAAGAGGTGACTCATAGGAACAATGCACAAGAGGGCGAGTGGAGATCATGGAATTGGAGATCAGAGAATGATCTTATGATGAACGGAGCATTCTTTGTTCAATCCGGAAGCCCCATTAGGAATCTCCCAAAGGCAGATATGATCCAGGCAAAACCTGGGTCATTTGTGACCAGGCTCACACGCTTTGCCGGTCCTCTTAAATGCGTTAAAAATAAGCCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

441

Amino Acids

49.25

Weight (kDa)

8.85

Isoelectric Point (pI)

28.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 784
AccB1I GGYRCC 2 cut(s) 587, 966
AccII CGCG 1 cut(s) 709
AccIII TCCGGA 1 cut(s) 1202
AciI CCGC 6 cut(s) 92, 123, 141, 451, 666, 955
AclI AACGTT 1 cut(s) 750
AclWI GGATC 5 cut(s) 158, 299, 491, 906, 1234
AcoI YGGCCR 2 cut(s) 534, 819
AcsI RAATTY 1 cut(s) 594
AcyI GRCGYC 1 cut(s) 588
AdeI CACNNNGTG 2 cut(s) 460, 563
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 440, 662
AflIII ACRYGT 1 cut(s) 707
AgeI ACCGGT 1 cut(s) 1068
AgsI TTSAA 6 cut(s) 190, 244, 467, 879, 928, 1199
AjnI CCWGG 5 cut(s) 655, 1059, 1242, 1252, 1268
AluBI AGCT 4 cut(s) 14, 22, 514, 526
AluI AGCT 4 cut(s) 14, 22, 514, 526
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 1 cut(s) 772
Alw44I GTGCAC 1 cut(s) 572
AlwI GGATC 5 cut(s) 158, 299, 491, 906, 1234
Ama87I CYCGRG 1 cut(s) 495
Aor13HI TCCGGA 1 cut(s) 1202
AoxI GGCC 4 cut(s) 138, 473, 534, 819
ApaLI GTGCAC 1 cut(s) 572
ApeKI GCWGC 2 cut(s) 112, 1035
ApoI RAATTY 1 cut(s) 594
ArsI GACNNNNNNTTYG 2 cut(s) 1241, 1273
AsiGI ACCGGT 1 cut(s) 1068
Asp700I GAANNNNTTC 1 cut(s) 525
AspLEI GCGC 4 cut(s) 363, 590, 705, 785
AspS9I GGNCC 4 cut(s) 260, 386, 473, 1289
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 6 cut(s) 169, 619, 817, 833, 838, 1117
AsuNHI GCTAGC 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 495
AvaII GGWCC 3 cut(s) 260, 386, 1289
BaeGI GKGCMC 2 cut(s) 349, 576
BalI TGGCCA 1 cut(s) 536
BanI GGYRCC 2 cut(s) 587, 966
BanII GRGCYC 1 cut(s) 795
BauI CACGAG 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 2 cut(s) 124, 1047
BccI CCATC 5 cut(s) 578, 716, 782, 812, 830
BceAI ACGGC 1 cut(s) 834
BciT130I CCWGG 5 cut(s) 657, 1061, 1244, 1254, 1270
BclI TGATCA 1 cut(s) 621
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 772
BfaI CTAG 2 cut(s) 335, 425
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 591
BglI GCCNNNNNGGC 1 cut(s) 137
BisI GCNGC 5 cut(s) 113, 123, 141, 667, 1036
BlsI GCNGC 5 cut(s) 114, 124, 142, 668, 1037
Bme1390I CCNGG 6 cut(s) 441, 657, 1061, 1244, 1254, 1270
Bme18I GGWCC 3 cut(s) 260, 386, 1289
BmeT110I CYCGRG 1 cut(s) 495
BmgT120I GGNCC 4 cut(s) 260, 386, 473, 1289
BmiI GGNNCC 4 cut(s) 261, 589, 742, 968
BmrFI CCNGG 6 cut(s) 441, 657, 1061, 1244, 1254, 1270
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 5 cut(s) 290, 544, 790, 897, 948
BmtI GCTAGC 1 cut(s) 338
BmuI ACTGGG 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 393
BpuMI CCSGG 1 cut(s) 441
Bsa29I ATCGAT 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 588
BsaJI CCNNGG 5 cut(s) 349, 808, 962, 1060, 1253
BsaWI WCCGGW 2 cut(s) 1068, 1202
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 662
Bse118I RCCGGY 3 cut(s) 969, 1068, 1286
Bse1I ACTGG 3 cut(s) 317, 376, 537
Bse3DI GCAATG 4 cut(s) 12, 87, 599, 1074
BseAI TCCGGA 1 cut(s) 1202
BseBI CCWGG 5 cut(s) 657, 1061, 1244, 1254, 1270
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 5 cut(s) 349, 808, 962, 1060, 1253
BseGI GGATG 4 cut(s) 576, 639, 804, 963
BseLI CCNNNNNNNGG 2 cut(s) 440, 662
BseMI GCAATG 4 cut(s) 12, 87, 599, 1074
BseMII CTCAG 2 cut(s) 6, 908
BseNI ACTGG 3 cut(s) 317, 376, 537
BseSI GKGCMC 2 cut(s) 349, 576
BseXI GCAGC 2 cut(s) 124, 1047
Bsh1236I CGCG 1 cut(s) 709
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 4 cut(s) 140, 475, 536, 821
BshNI GGYRCC 2 cut(s) 587, 966
BshTI ACCGGT 1 cut(s) 1068
BshVI ATCGAT 1 cut(s) 285
BsiEI CGRYCG 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 495
BsiSI CCGG 5 cut(s) 441, 970, 1069, 1203, 1287
BslFI GGGAC 2 cut(s) 512, 692
BslI CCNNNNNNNGG 2 cut(s) 440, 662
BsmAI GTCTC 1 cut(s) 772
BsmFI GGGAC 2 cut(s) 512, 692
BsmI GAATGC 1 cut(s) 1187
BsnI GGCC 4 cut(s) 140, 475, 536, 821
BsoBI CYCGRG 1 cut(s) 495
Bsp1286I GDGCHC 3 cut(s) 349, 576, 795
Bsp13I TCCGGA 1 cut(s) 1202
BspACI CCGC 6 cut(s) 92, 123, 141, 451, 666, 955
BspANI GGCC 4 cut(s) 140, 475, 536, 821
BspCNI CTCAG 2 cut(s) 7, 907
BspDI ATCGAT 1 cut(s) 285
BspEI TCCGGA 1 cut(s) 1202
BspFNI CGCG 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 261, 589, 742, 968
BspOI GCTAGC 1 cut(s) 338
BspPI GGATC 5 cut(s) 158, 299, 491, 906, 1234
BspQI GCTCTTC 1 cut(s) 516
BspT107I GGYRCC 2 cut(s) 587, 966
BsrDI GCAATG 4 cut(s) 12, 87, 599, 1074
BsrFI RCCGGY 3 cut(s) 969, 1068, 1286
BsrI ACTGG 3 cut(s) 317, 376, 537
BssAI RCCGGY 3 cut(s) 969, 1068, 1286
BssECI CCNNGG 5 cut(s) 349, 808, 962, 1060, 1253
BssNI GRCGYC 1 cut(s) 588
BssSI CACGAG 1 cut(s) 558
BssT1I CCWWGG 3 cut(s) 349, 808, 962
Bst2BI CACGAG 1 cut(s) 558
Bst2UI CCWGG 5 cut(s) 657, 1061, 1244, 1254, 1270
Bst4CI ACNGT 2 cut(s) 76, 839
Bst6I CTCTTC 1 cut(s) 516
BstACI GRCGYC 1 cut(s) 588
BstAPI GCANNNNNTGC 2 cut(s) 89, 563
BstC8I GCNNGC 2 cut(s) 336, 707
BstDEI CTNAG 2 cut(s) 15, 894
BstF5I GGATG 4 cut(s) 576, 639, 804, 963
BstFNI CGCG 1 cut(s) 709
BstH2I RGCGCY 1 cut(s) 591
BstHHI GCGC 4 cut(s) 363, 590, 705, 785
BstMAI GTCTC 1 cut(s) 772
BstMCI CGRYCG 1 cut(s) 289
BstNI CCWGG 5 cut(s) 657, 1061, 1244, 1254, 1270
BstSCI CCNGG 6 cut(s) 439, 655, 1059, 1242, 1252, 1268
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 2 cut(s) 349, 576
BstUI CGCG 1 cut(s) 709
BstV1I GCAGC 2 cut(s) 124, 1047
Bsu15I ATCGAT 1 cut(s) 285
BsuRI GGCC 4 cut(s) 140, 475, 536, 821
BsuTUI ATCGAT 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 313
BtsCI GGATG 4 cut(s) 576, 639, 804, 963
BtsIMutI CAGTG 2 cut(s) 81, 544
Cac8I GCNNGC 2 cut(s) 336, 707
CfoI GCGC 4 cut(s) 363, 590, 705, 785
Cfr10I RCCGGY 3 cut(s) 969, 1068, 1286
Cfr13I GGNCC 4 cut(s) 260, 386, 473, 1289
ClaI ATCGAT 1 cut(s) 285
CseI GACGC 1 cut(s) 425
Csp6I GTAC 1 cut(s) 253
CspAI ACCGGT 1 cut(s) 1068
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 15, 894
DinI GGCGCC 1 cut(s) 589
DraIII CACNNNGTG 2 cut(s) 460, 563
EaeI YGGCCR 2 cut(s) 534, 819
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
EciI GGCGGA 1 cut(s) 440
Eco130I CCWWGG 3 cut(s) 349, 808, 962
Eco24I GRGCYC 1 cut(s) 795
Eco47I GGWCC 3 cut(s) 260, 386, 1289
Eco88I CYCGRG 1 cut(s) 495
EcoRII CCWGG 5 cut(s) 655, 1059, 1242, 1252, 1268
EcoT14I CCWWGG 3 cut(s) 349, 808, 962
EcoT22I ATGCAT 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 795
EgeI GGCGCC 1 cut(s) 589
EheI GGCGCC 1 cut(s) 589
ErhI CCWWGG 3 cut(s) 349, 808, 962
FaqI GGGAC 2 cut(s) 512, 692
FbaI TGATCA 1 cut(s) 621
Fnu4HI GCNGC 5 cut(s) 113, 123, 141, 667, 1036
FokI GGATG 4 cut(s) 563, 626, 791, 970
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 5 cut(s) 113, 123, 141, 667, 1036
FspBI CTAG 2 cut(s) 335, 425
FspI TGCGCA 1 cut(s) 784
GlaI GCGC 4 cut(s) 362, 589, 704, 784
GluI GCNGC 5 cut(s) 113, 123, 141, 667, 1036
GsuI CTGGAG 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 591
HaeIII GGCC 4 cut(s) 140, 475, 536, 821
HapII CCGG 5 cut(s) 441, 970, 1069, 1203, 1287
HgaI GACGC 1 cut(s) 425
HhaI GCGC 4 cut(s) 363, 590, 705, 785
Hin1I GRCGYC 1 cut(s) 588
Hin6I GCGC 4 cut(s) 361, 588, 703, 783
HinP1I GCGC 4 cut(s) 361, 588, 703, 783
HincII GTYRAC 1 cut(s) 994
HindII GTYRAC 1 cut(s) 994
HinfI GANTC 4 cut(s) 463, 680, 1108, 1219
HpaII CCGG 5 cut(s) 441, 970, 1069, 1203, 1287
HphI GGTGA 6 cut(s) 169, 619, 817, 833, 838, 1117
Hpy166II GTNNAC 3 cut(s) 430, 574, 994
Hpy188I TCNGA 1 cut(s) 1162
Hpy188III TCNNGA 4 cut(s) 497, 896, 937, 1203
Hpy8I GTNNAC 3 cut(s) 430, 574, 994
Hpy99I CGWCG 3 cut(s) 419, 719, 1087
HpyAV CCTTC 4 cut(s) 130, 220, 228, 934
HpyCH4III ACNGT 2 cut(s) 76, 839
HpyCH4IV ACGT 2 cut(s) 570, 750
HpyCH4V TGCA 8 cut(s) 56, 221, 267, 557, 574, 604, 910, 1124
HpyF3I CTNAG 2 cut(s) 15, 894
HpySE526I ACGT 2 cut(s) 570, 750
Hsp92I GRCGYC 1 cut(s) 588
HspAI GCGC 4 cut(s) 361, 588, 703, 783
KasI GGCGCC 1 cut(s) 587
Kpn2I TCCGGA 1 cut(s) 1202
Ksp22I TGATCA 1 cut(s) 621
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 3 cut(s) 740, 1084, 1184
Lsp1109I GCAGC 2 cut(s) 124, 1047
LweI GCATC 5 cut(s) 290, 544, 790, 897, 948
MaeI CTAG 2 cut(s) 335, 425
MaeII ACGT 2 cut(s) 570, 750
MaeIII GTNAC 6 cut(s) 175, 400, 539, 839, 1105, 1264
MboII GAAGA 2 cut(s) 533, 625
MhlI GDGCHC 3 cut(s) 349, 576, 795
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 5 cut(s) 51, 594, 778, 1053, 1150
MluI ACGCGT 1 cut(s) 707
MluNI TGGCCA 1 cut(s) 536
Mly113I GGCGCC 1 cut(s) 588
MlyI GAGTC 2 cut(s) 674, 1102
MmeI TCCRAC 1 cut(s) 858
Mox20I TGGCCA 1 cut(s) 536
Mph1103I ATGCAT 1 cut(s) 269
MroI TCCGGA 1 cut(s) 1202
MroXI GAANNNNTTC 1 cut(s) 525
MscI TGGCCA 1 cut(s) 536
MseI TTAA 3 cut(s) 1296, 1305, 1321
MslI CAYNNNNRTG 1 cut(s) 858
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 955
MspI CCGG 5 cut(s) 441, 970, 1069, 1203, 1287
MspR9I CCNGG 6 cut(s) 441, 657, 1061, 1244, 1254, 1270
Mva1269I GAATGC 1 cut(s) 1187
MvaI CCWGG 5 cut(s) 657, 1061, 1244, 1254, 1270
MvnI CGCG 1 cut(s) 709
NarI GGCGCC 1 cut(s) 588
NciI CCSGG 1 cut(s) 441
NheI GCTAGC 1 cut(s) 334
NlaIV GGNNCC 4 cut(s) 261, 589, 742, 968
NmuCI GTSAC 6 cut(s) 175, 400, 539, 839, 1105, 1264
NsbI TGCGCA 1 cut(s) 784
NsiI ATGCAT 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 3 cut(s) 295, 996, 1091
PctI GAATGC 1 cut(s) 1187
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 2 cut(s) 463, 1219
PflFI GACNNNGTC 1 cut(s) 764
PinAI ACCGGT 1 cut(s) 1068
PkrI GCNGC 5 cut(s) 114, 124, 142, 668, 1037
Ple19I CGATCG 1 cut(s) 289
PleI GAGTC 2 cut(s) 674, 1102
PluTI GGCGCC 1 cut(s) 591
PpsI GAGTC 2 cut(s) 674, 1102
Psp1406I AACGTT 1 cut(s) 750
Psp6I CCWGG 5 cut(s) 655, 1059, 1242, 1252, 1268
PspGI CCWGG 5 cut(s) 655, 1059, 1242, 1252, 1268
PspN4I GGNNCC 4 cut(s) 261, 589, 742, 968
PspPI GGNCC 4 cut(s) 260, 386, 473, 1289
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
PsyI GACNNNGTC 1 cut(s) 764
PvuI CGATCG 1 cut(s) 289
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 858
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 3 cut(s) 1296, 1305, 1321
SatI GCNGC 5 cut(s) 113, 123, 141, 667, 1036
Sau96I GGNCC 4 cut(s) 260, 386, 473, 1289
SchI GAGTC 2 cut(s) 674, 1102
ScrFI CCNGG 6 cut(s) 441, 657, 1061, 1244, 1254, 1270
SduI GDGCHC 3 cut(s) 349, 576, 795
SfaNI GCATC 5 cut(s) 290, 544, 790, 897, 948
SfcI CTRYAG 1 cut(s) 168
SfoI GGCGCC 1 cut(s) 589
SinI GGWCC 3 cut(s) 260, 386, 1289
SmiMI CAYNNNNRTG 1 cut(s) 858
Sse9I AATT 5 cut(s) 51, 594, 778, 1053, 1150
SsiI CCGC 6 cut(s) 92, 123, 141, 451, 666, 955
SspDI GGCGCC 1 cut(s) 587
SspMI CTAG 2 cut(s) 335, 425
StyD4I CCNGG 6 cut(s) 439, 655, 1059, 1242, 1252, 1268
StyI CCWWGG 3 cut(s) 349, 808, 962
TaaI ACNGT 2 cut(s) 76, 839
TaiI ACGT 2 cut(s) 573, 753
TaqI TCGA 4 cut(s) 213, 285, 582, 1085
TaqII GACCGA 1 cut(s) 533
TasI AATT 5 cut(s) 51, 594, 778, 1053, 1150
TatI WGTACW 1 cut(s) 252
TauI GCSGC 3 cut(s) 125, 143, 669
TfiI GAWTC 2 cut(s) 463, 1219
Tru1I TTAA 3 cut(s) 1296, 1305, 1321
Tru9I TTAA 3 cut(s) 1296, 1305, 1321
TscAI CASTG 2 cut(s) 81, 544
TseFI GTSAC 6 cut(s) 175, 400, 539, 839, 1105, 1264
TseI GCWGC 2 cut(s) 112, 1035
Tsp45I GTSAC 6 cut(s) 175, 400, 539, 839, 1105, 1264
TspDTI ATGAA 4 cut(s) 162, 588, 1063, 1193
TspGWI ACGGA 3 cut(s) 732, 1071, 1197
TspRI CASTG 2 cut(s) 81, 544
Tth111I GACNNNGTC 1 cut(s) 764
VneI GTGCAC 1 cut(s) 572
VpaK11BI GGWCC 3 cut(s) 260, 386, 1289
XapI RAATTY 1 cut(s) 594
XcmI CCANNNNNNNNNTGG 2 cut(s) 969, 1250
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 2 cut(s) 335, 425
Zsp2I ATGCAT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.