Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8473671.1

Orthogroup ID

OG0003744

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1478

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8473671.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

aaagcggcctacaagcctgaacctctacatattacaacccatttgaacagacaagtccacaagacactggagggtcttaacgacacaagaaggagcttgagacaccattatgatggtccatgccaggttacaaacccaatcgacgcttgctggagatgcgatccaaattgggatcaagatcggcagaagctagccgattgtgctcttggctttggacatgagacaaccggaggcaaaggtggacgtatctataccgtcactgatcctagtgacgataacgtgcttgaaccagaagagggtacattgcggtgggctgtgattcaacctgaaccgctctggatcatatttaaagatgacatgaacatagaactgaaagaagagctcctggtcactagtaacaagaccattgatgcaagggggtgtaatgtgcacattcagggtggtgcgcaaattactctgcagtatgtgcagaacatcattatctgtaaccttcacgttcgtgacaccgtttccaaggaaggtggcatggttagggactcgacgggtcactttggactacgtacagccagcgatggtgatggaatatccttgtttggtgcctcaaacgtttggatagaccatgtttctgcctcaaattgcgccgatggactcatcgatgttgttgcagggtctactgccattaccatatccaactctcacttcaccgatcataatgatgtgatgctgtttggttcaagcgatagctactataaggatgaacttatgcagataactctagctttcaaccatttcggacagggattgatacagaggatgccaaggtgcagatttggttttttccatgttctgaacaatgactacactcactggattatgtatgccatcggtggcagcagccatcctaccatactaagccagggaaatcgctacattgctccagaaaatgctgcagctaaagagatatgtaatagagtcaacacagcaaagagtgagtggagtaaatggagttggacatcagaaggagatcttttcctgaatggagcgacttttactgaatctggaagcccgattcggaatatcccacaagaggatatgataactgcaaagcctgggacattcgtaaccacgctcacaatgtttgccggtcctcttaaatgtgatgaaggcaagccatgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C Pec_lyase_N

Protein Analysis

392

Amino Acids

43.53

Weight (kDa)

5.63

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01270 AT5G15110
fragaria_vesca	FvH4_5g15430 FvH4_6g49230
malus_domestica	MD06G1188600.v1.1 MD09G1047400.v1.1 MD14G1195000.v1.1 MD14G1195200.v1.1 MD17G1047500.v1.1
prunus_persica	Prupe.3G271600_v2.0.a1 Prupe.5G186900_v2.0.a1
pyrus_communis	pycom06g16740 pycom17g04230
rosa_chinensis	RchiOBHm_Chr2g0169091 RchiOBHm_Chr7g0180651
rosa_laevigata	RLG00000005246 RLG00000021833
rosa_multiflora	Rmu_co8469407.1_g000001 Rmu_co8473671.1_g000001 Rmu_ssc0000393.1_g000032
rosa_roxburghii	Rroxscaffold_2G00082470
rosa_rugosa	Rorug02G0536800 Rorug06G0434600
rosa_samantha	Rh2AG608700 Rh2BG621600 Rh2CG590300 Rh2DG632200 Rh7AG036000 Rh7BG035900 Rh7CG037500 Rh7DG036100
rosa_wichuraiana	Rw2G050470 Rw7G002960 Rw7G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	671
AciI	CCGC	3 cut(s)	5, 307, 332
AclI	AACGTT	1 cut(s)	606
AclWI	GGATC	4 cut(s)	155, 180, 257, 347
AfaI	GTAC	2 cut(s)	301, 562
AfiI	CCNNNNNNNGG	2 cut(s)	296, 1087
AgsI	TTSAA	5 cut(s)	46, 287, 323, 735, 784
AhlI	ACTAGT	1 cut(s)	392
AjnI	CCWGG	4 cut(s)	123, 384, 915, 1108
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AleI	CACNNNNGTG	1 cut(s)	498
AluBI	AGCT	6 cut(s)	96, 190, 382, 744, 779, 953
AluI	AGCT	6 cut(s)	96, 190, 382, 744, 779, 953
Alw21I	GWGCWC	3 cut(s)	205, 384, 432
Alw26I	GTCTC	2 cut(s)	94, 215
Alw44I	GTGCAC	1 cut(s)	428
AlwI	GGATC	4 cut(s)	155, 180, 257, 347
AoxI	GGCC	1 cut(s)	6
ApaLI	GTGCAC	1 cut(s)	428
ApeKI	GCWGC	4 cut(s)	891, 894, 947, 950
AspLEI	GCGC	2 cut(s)	448, 641
AspS9I	GGNCC	2 cut(s)	116, 1145
AsuHPI	GGTGA	2 cut(s)	587, 694
AsuNHI	GCTAGC	1 cut(s)	190
AvaII	GGWCC	2 cut(s)	116, 1145
BaeGI	GKGCMC	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	384
Bbv12I	GWGCWC	3 cut(s)	205, 384, 432
BbvI	GCAGC	4 cut(s)	903, 906, 934, 962
BccI	CCATC	6 cut(s)	107, 566, 572, 638, 890, 906
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	4 cut(s)	125, 386, 917, 1110
BcoDI	GTCTC	2 cut(s)	94, 215
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	4 cut(s)	191, 267, 393, 776
BfmI	CTRYAG	2 cut(s)	458, 948
BglII	AGATCT	1 cut(s)	1024
BisI	GCNGC	5 cut(s)	6, 892, 895, 948, 951
BlsI	GCNGC	5 cut(s)	7, 893, 896, 949, 952
Bme1390I	CCNGG	4 cut(s)	125, 386, 917, 1110
Bme18I	GGWCC	2 cut(s)	116, 1145
BmgT120I	GGNCC	2 cut(s)	116, 1145
BmiI	GGNNCC	1 cut(s)	598
BmrFI	CCNGG	4 cut(s)	125, 386, 917, 1110
BmsI	GCATC	4 cut(s)	146, 400, 711, 804
BmtI	GCTAGC	1 cut(s)	194
BpmI	CTGGAG	3 cut(s)	89, 172, 921
BpuEI	CTTGAG	1 cut(s)	118
Bsa29I	ATCGAT	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	560
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	513, 818, 916, 1109
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 1087
Bse118I	RCCGGY	1 cut(s)	1142
Bse1I	ACTGG	2 cut(s)	72, 872
Bse3DI	GCAATG	2 cut(s)	302, 930
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	4 cut(s)	125, 386, 917, 1110
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	4 cut(s)	513, 818, 916, 1109
BseGI	GGATG	3 cut(s)	760, 819, 898
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	296, 1087
BseMI	GCAATG	2 cut(s)	302, 930
BseNI	ACTGG	2 cut(s)	72, 872
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	4 cut(s)	903, 906, 934, 962
BsgI	GTGCAG	2 cut(s)	488, 844
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	596
BshVI	ATCGAT	1 cut(s)	654
BsiHKAI	GWGCWC	3 cut(s)	205, 384, 432
BsiSI	CCGG	2 cut(s)	228, 1143
BslFI	GGGAC	2 cut(s)	548, 1126
BslI	CCNNNNNNNGG	2 cut(s)	296, 1087
BsmAI	GTCTC	2 cut(s)	94, 215
BsmFI	GGGAC	2 cut(s)	548, 1126
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	3 cut(s)	205, 384, 432
Bsp143I	GATC	7 cut(s)	160, 172, 178, 262, 339, 706, 1024
BspACI	CCGC	3 cut(s)	5, 307, 332
BspANI	GGCC	1 cut(s)	8
BspDI	ATCGAT	1 cut(s)	654
BspLI	GGNNCC	1 cut(s)	598
BspMAI	CTGCAG	2 cut(s)	462, 952
BspOI	GCTAGC	1 cut(s)	194
BspPI	GGATC	4 cut(s)	155, 180, 257, 347
BspQI	GCTCTTC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	596
BsrBI	CCGCTC	1 cut(s)	334
BsrDI	GCAATG	2 cut(s)	302, 930
BsrFI	RCCGGY	1 cut(s)	1142
BsrI	ACTGG	2 cut(s)	72, 872
BssAI	RCCGGY	1 cut(s)	1142
BssECI	CCNNGG	4 cut(s)	513, 818, 916, 1109
BssMI	GATC	7 cut(s)	160, 172, 178, 262, 339, 706, 1024
BssT1I	CCWWGG	2 cut(s)	513, 818
Bst2UI	CCWGG	4 cut(s)	125, 386, 917, 1110
Bst4CI	ACNGT	2 cut(s)	256, 508
Bst6I	CTCTTC	2 cut(s)	288, 372
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstBAI	YACGTR	1 cut(s)	560
BstC8I	GCNNGC	4 cut(s)	148, 192, 568, 1169
BstDEI	CTNAG	1 cut(s)	911
BstF5I	GGATG	3 cut(s)	760, 819, 898
BstHHI	GCGC	2 cut(s)	448, 641
BstKTI	GATC	7 cut(s)	163, 175, 181, 265, 342, 709, 1027
BstMAI	GTCTC	2 cut(s)	94, 215
BstMBI	GATC	7 cut(s)	160, 172, 178, 262, 339, 706, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 200, 466
BstNI	CCWGG	4 cut(s)	125, 386, 917, 1110
BstSCI	CCNGG	4 cut(s)	123, 384, 915, 1108
BstSFI	CTRYAG	2 cut(s)	458, 948
BstSLI	GKGCMC	1 cut(s)	432
BstSNI	TACGTA	1 cut(s)	560
BstV1I	GCAGC	4 cut(s)	903, 906, 934, 962
BstX2I	RGATCY	1 cut(s)	1024
BstXI	CCANNNNNNTGG	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	1024
Bsu15I	ATCGAT	1 cut(s)	654
BsuRI	GGCC	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	654
BtgZI	GCGATG	1 cut(s)	585
BtsCI	GGATG	3 cut(s)	760, 819, 898
BtsIMutI	CAGTG	3 cut(s)	65, 258, 865
Cac8I	GCNNGC	4 cut(s)	148, 192, 568, 1169
CfoI	GCGC	2 cut(s)	448, 641
Cfr10I	RCCGGY	1 cut(s)	1142
Cfr13I	GGNCC	2 cut(s)	116, 1145
ClaI	ATCGAT	1 cut(s)	654
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	300, 561
CspCI	CAANNNNNGTGG	2 cut(s)	502, 537
CviAII	CATG	7 cut(s)	120, 218, 358, 526, 620, 842, 1173
CviQI	GTAC	2 cut(s)	300, 561
DdeI	CTNAG	1 cut(s)	911
DpnI	GATC	7 cut(s)	162, 174, 180, 264, 341, 708, 1026
DpnII	GATC	7 cut(s)	160, 172, 178, 262, 339, 706, 1024
DraI	TTTAAA	1 cut(s)	349
Eam1104I	CTCTTC	2 cut(s)	288, 372
EarI	CTCTTC	2 cut(s)	288, 372
Ecl136II	GAGCTC	1 cut(s)	382
Eco105I	TACGTA	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	513, 818
Eco24I	GRGCYC	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	116, 1145
Eco53kI	GAGCTC	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	382
EcoRII	CCWGG	4 cut(s)	123, 384, 915, 1108
EcoT14I	CCWWGG	2 cut(s)	513, 818
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	2 cut(s)	513, 818
FaeI	CATG	7 cut(s)	123, 221, 361, 529, 623, 845, 1176
FalI	AAGNNNNNCTT	2 cut(s)	1011, 1043
FaqI	GGGAC	2 cut(s)	548, 1126
FatI	CATG	7 cut(s)	119, 217, 357, 525, 619, 841, 1172
FblI	GTMKAC	1 cut(s)	671
Fnu4HI	GCNGC	5 cut(s)	6, 892, 895, 948, 951
FokI	GGATG	3 cut(s)	767, 826, 885
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	5 cut(s)	6, 892, 895, 948, 951
FspBI	CTAG	4 cut(s)	191, 267, 393, 776
FspI	TGCGCA	1 cut(s)	447
GlaI	GCGC	2 cut(s)	447, 640
GluI	GCNGC	5 cut(s)	6, 892, 895, 948, 951
GsuI	CTGGAG	3 cut(s)	89, 172, 921
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	2 cut(s)	228, 1143
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	2 cut(s)	448, 641
Hin1II	CATG	7 cut(s)	123, 221, 361, 529, 623, 845, 1176
Hin6I	GCGC	2 cut(s)	446, 639
HinP1I	GCGC	2 cut(s)	446, 639
HincII	GTYRAC	1 cut(s)	976
HindII	GTYRAC	1 cut(s)	976
HinfI	GANTC	6 cut(s)	319, 536, 648, 972, 1055, 1069
HpaII	CCGG	2 cut(s)	228, 1143
HphI	GGTGA	2 cut(s)	587, 694
Hpy166II	GTNNAC	5 cut(s)	58, 242, 430, 672, 976
Hpy188I	TCNGA	4 cut(s)	794, 849, 1018, 1074
Hpy188III	TCNNGA	6 cut(s)	176, 337, 500, 938, 1033, 1059
Hpy8I	GTNNAC	5 cut(s)	58, 242, 430, 672, 976
Hpy99I	CGWCG	2 cut(s)	146, 544
HpyAV	CCTTC	5 cut(s)	84, 500, 512, 1013, 1157
HpyCH4III	ACNGT	2 cut(s)	256, 508
HpyCH4IV	ACGT	5 cut(s)	244, 279, 495, 559, 606
HpyCH4V	TGCA	9 cut(s)	413, 430, 460, 469, 665, 766, 825, 950, 1103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 200, 466
HpyF3I	CTNAG	1 cut(s)	911
HpySE526I	ACGT	5 cut(s)	244, 279, 495, 559, 606
Hsp92II	CATG	7 cut(s)	123, 221, 361, 529, 623, 845, 1176
HspAI	GCGC	2 cut(s)	446, 639
Kzo9I	GATC	7 cut(s)	160, 172, 178, 262, 339, 706, 1024
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	4 cut(s)	93, 387, 940, 1040
Lsp1109I	GCAGC	4 cut(s)	903, 906, 934, 962
LweI	GCATC	4 cut(s)	146, 400, 711, 804
MaeI	CTAG	4 cut(s)	191, 267, 393, 776
MaeII	ACGT	5 cut(s)	244, 279, 495, 559, 606
MaeIII	GTNAC	9 cut(s)	127, 256, 269, 388, 395, 485, 500, 545, 1120
MalI	GATC	7 cut(s)	162, 174, 180, 264, 341, 708, 1026
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	7 cut(s)	160, 172, 178, 262, 339, 706, 1024
MboII	GAAGA	2 cut(s)	305, 389
MflI	RGATCY	1 cut(s)	1024
MhlI	GDGCHC	3 cut(s)	205, 384, 432
MluCI	AATT	3 cut(s)	166, 450, 634
MlyI	GAGTC	3 cut(s)	530, 642, 981
MmeI	TCCRAC	2 cut(s)	714, 989
MnlI	CCTC	9 cut(s)	33, 64, 224, 289, 610, 640, 804, 1081, 1158
MseI	TTAA	3 cut(s)	78, 348, 1152
MslI	CAYNNNNRTG	5 cut(s)	108, 111, 307, 498, 714
MspI	CCGG	2 cut(s)	228, 1143
MspR9I	CCNGG	4 cut(s)	125, 386, 917, 1110
MvaI	CCWGG	4 cut(s)	125, 386, 917, 1110
MwoI	GCNNNNNNNGC	3 cut(s)	156, 200, 466
NdeII	GATC	7 cut(s)	160, 172, 178, 262, 339, 706, 1024
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	7 cut(s)	123, 221, 361, 529, 623, 845, 1176
NlaIV	GGNNCC	1 cut(s)	598
NmuCI	GTSAC	5 cut(s)	256, 269, 388, 500, 545
NsbI	TGCGCA	1 cut(s)	447
OliI	CACNNNNGTG	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	319, 1055, 1069
PkrI	GCNGC	5 cut(s)	7, 893, 896, 949, 952
PleI	GAGTC	3 cut(s)	530, 642, 980
PpsI	GAGTC	3 cut(s)	530, 642, 980
Ppu21I	YACGTR	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	384
Psp1406I	AACGTT	1 cut(s)	606
Psp6I	CCWGG	4 cut(s)	123, 384, 915, 1108
PspGI	CCWGG	4 cut(s)	123, 384, 915, 1108
PspN4I	GGNNCC	1 cut(s)	598
PspPI	GGNCC	2 cut(s)	116, 1145
PsrI	GAACNNNNNNTAC	2 cut(s)	842, 874
PstI	CTGCAG	2 cut(s)	462, 952
PsuI	RGATCY	1 cut(s)	1024
RsaI	GTAC	2 cut(s)	301, 562
RsaNI	GTAC	2 cut(s)	300, 561
RseI	CAYNNNNRTG	5 cut(s)	108, 111, 307, 498, 714
SacI	GAGCTC	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	78, 348, 1152
SatI	GCNGC	5 cut(s)	6, 892, 895, 948, 951
Sau3AI	GATC	7 cut(s)	160, 172, 178, 262, 339, 706, 1024
Sau96I	GGNCC	2 cut(s)	116, 1145
SchI	GAGTC	3 cut(s)	530, 642, 981
ScrFI	CCNGG	4 cut(s)	125, 386, 917, 1110
SduI	GDGCHC	3 cut(s)	205, 384, 432
SfaNI	GCATC	4 cut(s)	146, 400, 711, 804
SfcI	CTRYAG	2 cut(s)	458, 948
SinI	GGWCC	2 cut(s)	116, 1145
SmiMI	CAYNNNNRTG	5 cut(s)	108, 111, 307, 498, 714
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SnaBI	TACGTA	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	3 cut(s)	166, 450, 634
SsiI	CCGC	3 cut(s)	5, 307, 332
SspMI	CTAG	4 cut(s)	191, 267, 393, 776
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	4 cut(s)	123, 384, 915, 1108
StyI	CCWWGG	2 cut(s)	513, 818
TaaI	ACNGT	2 cut(s)	256, 508
TaiI	ACGT	5 cut(s)	247, 282, 498, 562, 609
TaqI	TCGA	3 cut(s)	141, 539, 654
TasI	AATT	3 cut(s)	166, 450, 634
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	319, 1055, 1069
Tru1I	TTAA	3 cut(s)	78, 348, 1152
Tru9I	TTAA	3 cut(s)	78, 348, 1152
TscAI	CASTG	3 cut(s)	72, 265, 872
TseFI	GTSAC	5 cut(s)	256, 269, 388, 500, 545
TseI	GCWGC	4 cut(s)	891, 894, 947, 950
Tsp45I	GTSAC	5 cut(s)	256, 269, 388, 500, 545
TspDTI	ATGAA	3 cut(s)	374, 771, 1176
TspRI	CASTG	3 cut(s)	72, 265, 872
VneI	GTGCAC	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	116, 1145
XmiI	GTMKAC	1 cut(s)	671
XspI	CTAG	4 cut(s)	191, 267, 393, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.