pycom17g04230

Pectate lyase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
2901725 .. 2903582
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g04230.4

Sequence Viewer

Length: 1365 bp
ATGGCGTCGAAGCTCAATTTGGCCTTTCTTATGATATCTTTCTGCATGCTGGTTCCAAGCTTGAAGGCTGAGACCCAAAATGACACCCTCAACATTGCTGAGTTCGACTCTGTATGGCAGCAACGAGCCCTGAAAGCTCAGAAGGCAGCTCTCAAGGCCTACCAACCCAACCCGGAACGAGTAACCGAGGACTTCAACGAAAGCGTTGAAATGACCATCATTGAGGACGACCACGACGACGATCATGCTGCGGGCAACAGCACAGGGAGGCATCTGTTAGGCAAACGTTACACGGGCCCTTGCAAGGCCACAAACCCGATCGACCGCTGCTGGCGATGCCAGGCCAACTGGGCTGACAACCGCAAGCACCTGGCCAGCTGCGTGAAAGGCTTCGGCCACAAGACACGCGGAGGCAAGAAAGGGGCTTACTACATCGTCACCGACCCTTCGGACGACAGTATCCATGACCCTAAGCCCGGAACCCTACGTCACGCGGTGATCCAAAAGCAACCCTTGTGGATCATATTTGCACGCAGCATGGTCATCAGGCTGACCCAGGAGCTCATAGTAACAAGCCACAAGACAATTGACGCACGCGGGGAAAATGTACATATTGCTCATGGCGCTGGGATCACACTCCAGTTCGTGCAGAACGTGATTATTCATGGCCTCCGCATCCACGACACTGTACCGGGCAATGGAGGTATGATCAGGGACTCCGTGGATCACATCGGGATTCGCACGCAGAGCGACGGAGATGGTATCTCCATCTACGGATCGTCTAACATCTGGCTTGACCATCTTTCTATGTGGAATTGCGCCGATGGGCTCATCGACGCCATTCAAGGGTCCACTGCTATAACCATATCCAACAGCCACTTCACCCGTCACAACGACGTGATGCTTTTCGGAAGTAGCGATGGGTTTTCTGGGGACGCAATCATGCAGATAACAGTTGCATTTAACCATTTCGGCAAGGGATTGATACAGAGAATGCCAAGATGCAGATGGGGATTTATCCATGTTGTGAACAATGACTACACACATTGGATCATGTATGCCATCGGAGGAAGCTCTCACCCCACAATTATCAGCCAGGGCAACCGATTCATCGCCCCACCGAACCAGGCTGCAAAAGAAGTGACGAAGAGAGACTATGCACCGGAGAGCGTATGGAAGAGCTGGCAATGGAGATCAGACGGAGATCTTATGCTAAACGGAGCATTCTTTGTTCAATCTGGTGTGCCTAACAAGAACCATGGATTTGGAAAGTTAGACGTGATGAAGGCAAGGCCAGGCACATACGTCTCAAGGCTCACACGCTTTGCAGGTTCTCTCAAATGCAATGTTGGCCAACCATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

50.43

Weight (kDa)

8.76

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1319
AccII CGCG 3 cut(s) 408, 494, 597
AciI CCGC 7 cut(s) 251, 325, 361, 408, 494, 597, 673
AclI AACGTT 1 cut(s) 286
AclWI GGATC 6 cut(s) 493, 527, 638, 732, 784, 1058
AcoI YGGCCR 3 cut(s) 372, 394, 1351
AcyI GRCGYC 2 cut(s) 5, 837
AdeI CACNNNGTG 1 cut(s) 496
AfaI GTAC 2 cut(s) 609, 690
AfiI CCNNNNNNNGG 4 cut(s) 304, 476, 698, 846
AgsI TTSAA 5 cut(s) 64, 196, 209, 845, 1235
AjiI CACGTC 2 cut(s) 898, 1279
AjnI CCWGG 6 cut(s) 339, 369, 555, 1095, 1125, 1294
AjuI GAANNNNNNNTTGG 3 cut(s) 34, 863, 895
AluBI AGCT 8 cut(s) 13, 60, 137, 149, 378, 562, 1074, 1182
AluI AGCT 8 cut(s) 13, 60, 137, 149, 378, 562, 1074, 1182
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 3 cut(s) 65, 1146, 1312
AlwI GGATC 6 cut(s) 493, 527, 638, 732, 784, 1058
ApaI GGGCCC 1 cut(s) 299
ApeKI GCWGC 7 cut(s) 118, 146, 248, 327, 378, 534, 1130
Asp700I GAANNNNTTC 1 cut(s) 389
AspLEI GCGC 2 cut(s) 626, 821
AspS9I GGNCC 3 cut(s) 295, 296, 849
AsuC2I CCSGG 3 cut(s) 173, 477, 693
AsuHPI GGTGA 4 cut(s) 430, 508, 874, 1070
AvaII GGWCC 1 cut(s) 849
BaeGI GKGCMC 1 cut(s) 299
BaeI ACNNNNGTAYC 2 cut(s) 442, 475
BalI TGGCCA 2 cut(s) 374, 1353
BanII GRGCYC 4 cut(s) 130, 299, 564, 831
Bbv12I GWGCWC 1 cut(s) 564
BbvI GCAGC 7 cut(s) 130, 158, 235, 314, 365, 546, 1117
BccI CCATC 8 cut(s) 224, 752, 776, 807, 818, 914, 1002, 1070
BcgI CGANNNNNNTGC 4 cut(s) 227, 230, 261, 264
BciT130I CCWGG 6 cut(s) 341, 371, 557, 1097, 1127, 1296
BciVI GTATCC 1 cut(s) 470
BclI TGATCA 1 cut(s) 708
BcnI CCSGG 3 cut(s) 173, 477, 693
BcoDI GTCTC 3 cut(s) 65, 1146, 1312
BfaI CTAG 1 cut(s) 1363
BfoI RGCGCY 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 1319
BfuI GTATCC 1 cut(s) 470
BglI GCCNNNNNGGC 1 cut(s) 350
BglII AGATCT 1 cut(s) 1204
BisI GCNGC 7 cut(s) 119, 147, 249, 328, 379, 535, 1131
BlsI GCNGC 7 cut(s) 120, 148, 250, 329, 380, 536, 1132
Bme1390I CCNGG 9 cut(s) 173, 341, 371, 477, 557, 693, 1097, 1127, 1296
Bme18I GGWCC 1 cut(s) 849
BmgBI CACGTC 2 cut(s) 898, 1279
BmgT120I GGNCC 3 cut(s) 295, 296, 849
BmiI GGNNCC 4 cut(s) 54, 297, 481, 850
BmrFI CCNGG 9 cut(s) 173, 341, 371, 477, 557, 693, 1097, 1127, 1296
BmrI ACTGGG 1 cut(s) 358
BmsI GCATC 5 cut(s) 280, 326, 684, 891, 992
BmuI ACTGGG 1 cut(s) 358
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 1 cut(s) 623
Bpu10I CCTNAGC 1 cut(s) 471
BpuEI CTTGAG 2 cut(s) 137, 1294
BpuMI CCSGG 3 cut(s) 173, 477, 693
BsaHI GRCGYC 2 cut(s) 5, 837
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 5 cut(s) 186, 555, 720, 1096, 1258
BsaWI WCCGGW 1 cut(s) 1162
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 476, 698, 846
Bse1I ACTGG 2 cut(s) 353, 640
Bse3DI GCAATG 4 cut(s) 93, 703, 1193, 1351
BseBI CCWGG 6 cut(s) 341, 371, 557, 1097, 1127, 1296
BseDI CCNNGG 5 cut(s) 186, 555, 720, 1096, 1258
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 4 cut(s) 304, 476, 698, 846
BseMI GCAATG 4 cut(s) 93, 703, 1193, 1351
BseMII CTCAG 3 cut(s) 60, 90, 152
BseNI ACTGG 2 cut(s) 353, 640
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 7 cut(s) 130, 158, 235, 314, 365, 546, 1117
BseYI CCCAGC 1 cut(s) 626
BsgI GTGCAG 1 cut(s) 668
Bsh1236I CGCG 3 cut(s) 408, 494, 597
Bsh1285I CGRYCG 2 cut(s) 321, 325
BsiEI CGRYCG 2 cut(s) 321, 325
BsiHKAI GWGCWC 1 cut(s) 564
BsiSI CCGG 4 cut(s) 173, 477, 692, 1163
BslFI GGGAC 2 cut(s) 728, 947
BslI CCNNNNNNNGG 4 cut(s) 304, 476, 698, 846
BsmAI GTCTC 3 cut(s) 65, 1146, 1312
BsmBI CGTCTC 1 cut(s) 1312
BsmFI GGGAC 2 cut(s) 728, 947
BsmI GAATGC 2 cut(s) 999, 1223
Bso31I GGTCTC 1 cut(s) 65
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 4 cut(s) 130, 299, 564, 831
Bsp1407I TGTACA 1 cut(s) 607
Bsp19I CCATGG 1 cut(s) 1258
BspACI CCGC 7 cut(s) 251, 325, 361, 408, 494, 597, 673
BspCNI CTCAG 3 cut(s) 61, 91, 151
BspFNI CGCG 3 cut(s) 408, 494, 597
BspLI GGNNCC 4 cut(s) 54, 297, 481, 850
BspMI ACCTGC 1 cut(s) 1319
BspPI GGATC 6 cut(s) 493, 527, 638, 732, 784, 1058
BspQI GCTCTTC 1 cut(s) 1172
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 4 cut(s) 93, 703, 1193, 1351
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 2 cut(s) 353, 640
BssECI CCNNGG 5 cut(s) 186, 555, 720, 1096, 1258
BssNI GRCGYC 2 cut(s) 5, 837
BssT1I CCWWGG 1 cut(s) 1258
Bst2UI CCWGG 6 cut(s) 341, 371, 557, 1097, 1127, 1296
Bst4CI ACNGT 3 cut(s) 458, 688, 955
Bst6I CTCTTC 2 cut(s) 1142, 1172
BstACI GRCGYC 2 cut(s) 5, 837
BstAUI TGTACA 1 cut(s) 607
BstC8I GCNNGC 9 cut(s) 47, 253, 332, 365, 376, 532, 595, 743, 1184
BstDEI CTNAG 4 cut(s) 69, 99, 138, 471
BstDSI CCRYGG 2 cut(s) 720, 1258
BstF5I GGATG 1 cut(s) 675
BstFNI CGCG 3 cut(s) 408, 494, 597
BstH2I RGCGCY 1 cut(s) 627
BstHHI GCGC 2 cut(s) 626, 821
BstMAI GTCTC 3 cut(s) 65, 1146, 1312
BstMCI CGRYCG 2 cut(s) 321, 325
BstNI CCWGG 6 cut(s) 341, 371, 557, 1097, 1127, 1296
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 9 cut(s) 171, 339, 369, 475, 555, 691, 1095, 1125, 1294
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 3 cut(s) 408, 494, 597
BstV1I GCAGC 7 cut(s) 130, 158, 235, 314, 365, 546, 1117
BstX2I RGATCY 1 cut(s) 1204
BstXI CCANNNNNNTGG 1 cut(s) 1265
BstYI RGATCY 1 cut(s) 1204
BsuI GTATCC 1 cut(s) 470
BtgI CCRYGG 2 cut(s) 720, 1258
BtgZI GCGATG 3 cut(s) 349, 933, 1096
BtrI CACGTC 2 cut(s) 898, 1279
BtsCI GGATG 1 cut(s) 675
BtsI GCAGTG 1 cut(s) 852
BtsIMutI CAGTG 2 cut(s) 684, 852
BveI ACCTGC 1 cut(s) 1319
Cac8I GCNNGC 9 cut(s) 47, 253, 332, 365, 376, 532, 595, 743, 1184
CfoI GCGC 2 cut(s) 626, 821
Cfr13I GGNCC 3 cut(s) 295, 296, 849
CseI GACGC 3 cut(s) 599, 845, 944
Csp6I GTAC 2 cut(s) 608, 689
CspCI CAANNNNNGTGG 2 cut(s) 497, 532
CviQI GTAC 2 cut(s) 608, 689
DdeI CTNAG 4 cut(s) 69, 99, 138, 471
DraIII CACNNNGTG 1 cut(s) 496
EaeI YGGCCR 3 cut(s) 372, 394, 1351
Eam1104I CTCTTC 2 cut(s) 1142, 1172
EarI CTCTTC 2 cut(s) 1142, 1172
Ecl136II GAGCTC 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 1258
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 4 cut(s) 130, 299, 564, 831
Eco31I GGTCTC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 849
Eco53kI GAGCTC 1 cut(s) 562
EcoICRI GAGCTC 1 cut(s) 562
EcoO109I RGGNCCY 1 cut(s) 296
EcoRII CCWGG 6 cut(s) 339, 369, 555, 1095, 1125, 1294
EcoRV GATATC 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 1258
EcoT38I GRGCYC 4 cut(s) 130, 299, 564, 831
ErhI CCWWGG 1 cut(s) 1258
Esp3I CGTCTC 1 cut(s) 1312
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FaqI GGGAC 2 cut(s) 728, 947
FauI CCCGC 2 cut(s) 244, 590
FbaI TGATCA 1 cut(s) 708
Fnu4HI GCNGC 7 cut(s) 119, 147, 249, 328, 379, 535, 1131
FokI GGATG 1 cut(s) 662
FriOI GRGCYC 4 cut(s) 130, 299, 564, 831
Fsp4HI GCNGC 7 cut(s) 119, 147, 249, 328, 379, 535, 1131
FspBI CTAG 1 cut(s) 1363
GlaI GCGC 2 cut(s) 625, 820
GluI GCNGC 7 cut(s) 119, 147, 249, 328, 379, 535, 1131
GsaI CCCAGC 1 cut(s) 630
GsuI CTGGAG 1 cut(s) 623
HaeII RGCGCY 1 cut(s) 627
HapII CCGG 4 cut(s) 173, 477, 692, 1163
HgaI GACGC 3 cut(s) 599, 845, 944
HhaI GCGC 2 cut(s) 626, 821
Hin1I GRCGYC 2 cut(s) 5, 837
Hin6I GCGC 2 cut(s) 624, 819
HinP1I GCGC 2 cut(s) 624, 819
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 4 cut(s) 107, 716, 736, 1107
HpaII CCGG 4 cut(s) 173, 477, 692, 1163
HphI GGTGA 4 cut(s) 430, 508, 874, 1070
Hpy166II GTNNAC 2 cut(s) 852, 1030
Hpy188I TCNGA 5 cut(s) 141, 451, 911, 1067, 1198
Hpy188III TCNNGA 1 cut(s) 733
Hpy8I GTNNAC 2 cut(s) 852, 1030
Hpy99I CGWCG 6 cut(s) 10, 239, 242, 755, 839, 899
HpyAV CCTTC 4 cut(s) 58, 136, 456, 1279
HpyCH4III ACNGT 3 cut(s) 458, 688, 955
HpyCH4IV ACGT 6 cut(s) 286, 487, 654, 897, 1278, 1305
HpyF3I CTNAG 4 cut(s) 69, 99, 138, 471
HpySE526I ACGT 6 cut(s) 286, 487, 654, 897, 1278, 1305
Hsp92I GRCGYC 2 cut(s) 5, 837
HspAI GCGC 2 cut(s) 624, 819
Ksp22I TGATCA 1 cut(s) 708
LguI GCTCTTC 1 cut(s) 1172
LmnI GCTCC 2 cut(s) 559, 1220
Lsp1109I GCAGC 7 cut(s) 130, 158, 235, 314, 365, 546, 1117
LweI GCATC 5 cut(s) 280, 326, 684, 891, 992
MaeI CTAG 1 cut(s) 1363
MaeII ACGT 6 cut(s) 286, 487, 654, 897, 1278, 1305
MaeIII GTNAC 7 cut(s) 181, 287, 436, 488, 568, 887, 1141
MboII GAAGA 2 cut(s) 1159, 1189
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 1 cut(s) 1204
MhlI GDGCHC 4 cut(s) 130, 299, 564, 831
MlsI TGGCCA 2 cut(s) 374, 1353
MluCI AATT 4 cut(s) 16, 585, 814, 1086
MluNI TGGCCA 2 cut(s) 374, 1353
MlyI GAGTC 2 cut(s) 101, 710
MmeI TCCRAC 1 cut(s) 894
MnlI CCTC 8 cut(s) 98, 181, 217, 261, 404, 680, 695, 1061
Mox20I TGGCCA 2 cut(s) 374, 1353
MroXI GAANNNNTTC 1 cut(s) 389
MscI TGGCCA 2 cut(s) 374, 1353
MseI TTAA 1 cut(s) 963
Msp20I TGGCCA 2 cut(s) 374, 1353
MspA1I CMGCKG 2 cut(s) 327, 378
MspI CCGG 4 cut(s) 173, 477, 692, 1163
MspR9I CCNGG 9 cut(s) 173, 341, 371, 477, 557, 693, 1097, 1127, 1296
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 2 cut(s) 999, 1223
MvaI CCWGG 6 cut(s) 341, 371, 557, 1097, 1127, 1296
MvnI CGCG 3 cut(s) 408, 494, 597
NciI CCSGG 3 cut(s) 173, 477, 693
NcoI CCATGG 1 cut(s) 1258
NlaIV GGNNCC 4 cut(s) 54, 297, 481, 850
NmuCI GTSAC 4 cut(s) 436, 488, 887, 1141
NspI RCATGY 1 cut(s) 49
PaeI GCATGC 1 cut(s) 49
PceI AGGCCT 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 1172
PcsI WCGNNNNNNNCGW 3 cut(s) 234, 651, 915
PctI GAATGC 2 cut(s) 999, 1223
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 736, 1107
PkrI GCNGC 7 cut(s) 120, 148, 250, 329, 380, 536, 1132
Ple19I CGATCG 1 cut(s) 321
PleI GAGTC 2 cut(s) 101, 710
PpsI GAGTC 2 cut(s) 101, 710
Psp124BI GAGCTC 1 cut(s) 564
Psp1406I AACGTT 1 cut(s) 286
Psp6I CCWGG 6 cut(s) 339, 369, 555, 1095, 1125, 1294
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 6 cut(s) 339, 369, 555, 1095, 1125, 1294
PspN4I GGNNCC 4 cut(s) 54, 297, 481, 850
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 3 cut(s) 295, 296, 849
PsrI GAACNNNNNNTAC 2 cut(s) 1022, 1054
PsuI RGATCY 1 cut(s) 1204
PvuI CGATCG 1 cut(s) 321
PvuII CAGCTG 1 cut(s) 378
RsaI GTAC 2 cut(s) 609, 690
RsaNI GTAC 2 cut(s) 608, 689
SacI GAGCTC 1 cut(s) 564
SapI GCTCTTC 1 cut(s) 1172
SaqAI TTAA 1 cut(s) 963
SatI GCNGC 7 cut(s) 119, 147, 249, 328, 379, 535, 1131
Sau96I GGNCC 3 cut(s) 295, 296, 849
SchI GAGTC 2 cut(s) 101, 710
ScrFI CCNGG 9 cut(s) 173, 341, 371, 477, 557, 693, 1097, 1127, 1296
SduI GDGCHC 4 cut(s) 130, 299, 564, 831
SfaNI GCATC 5 cut(s) 280, 326, 684, 891, 992
SinI GGWCC 1 cut(s) 849
SmlI CTYRAG 2 cut(s) 152, 1309
SmoI CTYRAG 2 cut(s) 152, 1309
SphI GCATGC 1 cut(s) 49
Sse9I AATT 4 cut(s) 16, 585, 814, 1086
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 7 cut(s) 251, 325, 361, 408, 494, 597, 673
SspMI CTAG 1 cut(s) 1363
SstI GAGCTC 1 cut(s) 564
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 9 cut(s) 171, 339, 369, 475, 555, 691, 1095, 1125, 1294
StyI CCWWGG 1 cut(s) 1258
TaaI ACNGT 3 cut(s) 458, 688, 955
TaiI ACGT 6 cut(s) 289, 490, 657, 900, 1281, 1308
TaqI TCGA 4 cut(s) 8, 105, 321, 834
TasI AATT 4 cut(s) 16, 585, 814, 1086
TatI WGTACW 1 cut(s) 607
TfiI GAWTC 2 cut(s) 736, 1107
Tru1I TTAA 1 cut(s) 963
Tru9I TTAA 1 cut(s) 963
TscAI CASTG 2 cut(s) 691, 859
TseFI GTSAC 4 cut(s) 436, 488, 887, 1141
TseI GCWGC 7 cut(s) 118, 146, 248, 327, 378, 534, 1130
Tsp45I GTSAC 4 cut(s) 436, 488, 887, 1141
TspDTI ATGAA 3 cut(s) 653, 1099, 1298
TspGWI ACGGA 5 cut(s) 709, 768, 789, 1215, 1233
TspRI CASTG 2 cut(s) 691, 859
VpaK11BI GGWCC 1 cut(s) 849
XceI RCATGY 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 1005
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 1 cut(s) 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.