Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Reverse (-)

10199364 .. 10202619

Gene Structure 3256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17800.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAGACGAAGGGGGTGTTGCCATGCAATAACAACAAGACCAAAGCTAATAAGATGAAGCGCAAAGAGATACTTGAGAAGAAGAAGGCCATGGATGAACTCATCAAGGTAGCTTCTGCCGAGAAAGACCATCTTTCCTCCTTTCATGCCTTTCGCCATTACCAAAAAAACGGCTTGTCTGCATGTTTGGAGTCAGGAACAGGGGACCAGCTATCATCTTCTCTTAAGTACTACATTCAAAATCTCCTTAAGGCTAATATGGAGGGTCCGTATGGAACCGAGTGGCCGGTCGAAGAGAAGGTGAAGCGCAGGGAGATGGTTGCATCAGAAGCCCGTTATATATTTGTTTACGAGGCTTTGGATGCAAATGCAAATGAATTGTTGACAGTGTCTGGGAAGGAGAGGACTTCGGGTATCTGTATGGAGGAGAGGGGATCCTTGCTTGGGTTTGTACATTTTCGCTTTGTCATAGAGGAAGATTTGCCTGTGCTCTATGTGTATGAGTTACAACTTGAGTCTCATGTGCAAGGGAAAGGTCTTGGGAAGTTTCTAATGCAACTAATTGAGTTAATTGCTCGCAAGAATCACATGACTGCTGTTGTTCTGACTGTTCAAAAAGCAAACTTGGTAGCAATGAATTTCTATACAAGTAAGATGAGATATGTTATCTCATCTATATCACCATCCAAAGTTGATCCATGGTTAGGAACTCAGAAGAGTTATGAAATTCTTTGCAAATCTTTCAGCAATGACGCTAAAGCTATCTTGGAGGGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

260

Amino Acids

29.33

Weight (kDa)

8.84

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	429, 442, 689
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	2 cut(s)	637, 726
AfaI	GTAC	2 cut(s)	230, 453
AfiI	CCNNNNNNNGG	2 cut(s)	444, 704
AflII	CTTAAG	2 cut(s)	224, 248
AgsI	TTSAA	2 cut(s)	239, 614
AluBI	AGCT	4 cut(s)	47, 113, 211, 761
AluI	AGCT	4 cut(s)	47, 113, 211, 761
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	522
AlwI	GGATC	3 cut(s)	429, 442, 689
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	87, 284
ApoI	RAATTY	2 cut(s)	637, 726
AspLEI	GCGC	2 cut(s)	63, 309
AspS9I	GGNCC	3 cut(s)	205, 266, 773
AsuHPI	GGTGA	2 cut(s)	313, 672
AvaII	GGWCC	3 cut(s)	205, 266, 773
BamHI	GGATCC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	492
BccI	CCATC	3 cut(s)	138, 310, 691
BceAI	ACGGC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	522
BfrI	CTTAAG	2 cut(s)	224, 248
BmcAI	AGTACT	1 cut(s)	230
Bme18I	GGWCC	3 cut(s)	205, 266, 773
BmgT120I	GGNCC	3 cut(s)	205, 266, 773
BmiI	GGNNCC	5 cut(s)	206, 267, 277, 436, 774
BmsI	GCATC	2 cut(s)	332, 352
BpuEI	CTTGAG	2 cut(s)	95, 533
BsaJI	CCNNGG	2 cut(s)	90, 698
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 704
Bse118I	RCCGGY	1 cut(s)	286
Bse3DI	GCAATG	2 cut(s)	639, 754
BseDI	CCNNGG	2 cut(s)	90, 698
BseGI	GGATG	3 cut(s)	100, 367, 683
BseLI	CCNNNNNNNGG	2 cut(s)	444, 704
BseMI	GCAATG	2 cut(s)	639, 754
BseMII	CTCAG	1 cut(s)	725
BseRI	GAGGAG	1 cut(s)	440
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	89, 286
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	444, 704
BsmAI	GTCTC	1 cut(s)	522
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	89, 286
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	434, 694
Bsp19I	CCATGG	2 cut(s)	90, 698
BspANI	GGCC	2 cut(s)	89, 286
BspCNI	CTCAG	1 cut(s)	724
BspLI	GGNNCC	5 cut(s)	206, 267, 277, 436, 774
BspPI	GGATC	3 cut(s)	429, 442, 689
BspTI	CTTAAG	2 cut(s)	224, 248
BsrDI	GCAATG	2 cut(s)	639, 754
BsrFI	RCCGGY	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	90, 698
BssMI	GATC	2 cut(s)	434, 694
BssT1I	CCWWGG	2 cut(s)	90, 698
Bst4CI	ACNGT	2 cut(s)	388, 610
Bst6I	CTCTTC	2 cut(s)	288, 710
BstAFI	CTTAAG	2 cut(s)	224, 248
BstAUI	TGTACA	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	1 cut(s)	711
BstDSI	CCRYGG	2 cut(s)	90, 698
BstF5I	GGATG	3 cut(s)	100, 367, 683
BstHHI	GCGC	2 cut(s)	63, 309
BstKTI	GATC	2 cut(s)	437, 697
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	2 cut(s)	434, 694
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 362
BstNSI	RCATGY	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	89, 286
BtgI	CCRYGG	2 cut(s)	90, 698
BtsCI	GGATG	3 cut(s)	100, 367, 683
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	577
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	2 cut(s)	63, 309
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	3 cut(s)	205, 266, 773
CseI	GACGC	1 cut(s)	761
Csp6I	GTAC	2 cut(s)	229, 452
CviAII	CATG	8 cut(s)	24, 91, 146, 183, 521, 589, 699, 777
CviQI	GTAC	2 cut(s)	229, 452
DdeI	CTNAG	1 cut(s)	711
DpnI	GATC	2 cut(s)	436, 696
DpnII	GATC	2 cut(s)	434, 694
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	2 cut(s)	288, 710
EarI	CTCTTC	2 cut(s)	288, 710
Eco130I	CCWWGG	2 cut(s)	90, 698
Eco47I	GGWCC	3 cut(s)	205, 266, 773
EcoT14I	CCWWGG	2 cut(s)	90, 698
ErhI	CCWWGG	2 cut(s)	90, 698
FaeI	CATG	8 cut(s)	27, 94, 149, 186, 524, 592, 702, 780
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 117, 149
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	8 cut(s)	23, 90, 145, 182, 520, 588, 698, 776
FokI	GGATG	3 cut(s)	107, 374, 670
GlaI	GCGC	2 cut(s)	62, 308
HaeIII	GGCC	2 cut(s)	89, 286
HapII	CCGG	1 cut(s)	287
HgaI	GACGC	1 cut(s)	761
HhaI	GCGC	2 cut(s)	63, 309
Hin1II	CATG	8 cut(s)	27, 94, 149, 186, 524, 592, 702, 780
Hin6I	GCGC	2 cut(s)	61, 307
HinP1I	GCGC	2 cut(s)	61, 307
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	3 cut(s)	191, 515, 583
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	2 cut(s)	313, 672
Hpy166II	GTNNAC	2 cut(s)	349, 384
Hpy188I	TCNGA	3 cut(s)	328, 606, 714
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	2 cut(s)	349, 384
HpyAV	CCTTC	4 cut(s)	4, 79, 292, 391
HpyCH4III	ACNGT	2 cut(s)	388, 610
HpyCH4V	TGCA	8 cut(s)	27, 182, 323, 365, 371, 526, 556, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 362
HpyF3I	CTNAG	1 cut(s)	711
Hsp92II	CATG	8 cut(s)	27, 94, 149, 186, 524, 592, 702, 780
HspAI	GCGC	2 cut(s)	61, 307
Kzo9I	GATC	2 cut(s)	434, 694
LpnPI	CCDG	7 cut(s)	180, 186, 221, 295, 300, 378, 498
LweI	GCATC	2 cut(s)	332, 352
MaeIII	GTNAC	1 cut(s)	504
MalI	GATC	2 cut(s)	436, 696
MboI	GATC	2 cut(s)	434, 694
MboII	GAAGA	6 cut(s)	91, 94, 210, 305, 488, 727
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	5 cut(s)	377, 561, 570, 637, 726
MlyI	GAGTC	2 cut(s)	200, 524
MnlI	CCTC	8 cut(s)	148, 256, 346, 396, 418, 423, 466, 763
MseI	TTAA	3 cut(s)	225, 249, 569
MspCI	CTTAAG	2 cut(s)	224, 248
MspI	CCGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	329, 362
NcoI	CCATGG	2 cut(s)	90, 698
NdeII	GATC	2 cut(s)	434, 694
NlaIII	CATG	8 cut(s)	27, 94, 149, 186, 524, 592, 702, 780
NlaIV	GGNNCC	5 cut(s)	206, 267, 277, 436, 774
NmeAIII	GCCGAG	1 cut(s)	145
NspI	RCATGY	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	583
PflFI	GACNNNGTC	1 cut(s)	388
PleI	GAGTC	2 cut(s)	199, 523
PpsI	GAGTC	2 cut(s)	199, 523
PspN4I	GGNNCC	5 cut(s)	206, 267, 277, 436, 774
PspPI	GGNCC	3 cut(s)	205, 266, 773
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	434
PsyI	GACNNNGTC	1 cut(s)	388
RsaI	GTAC	2 cut(s)	230, 453
RsaNI	GTAC	2 cut(s)	229, 452
SaqAI	TTAA	3 cut(s)	225, 249, 569
Sau3AI	GATC	2 cut(s)	434, 694
Sau96I	GGNCC	3 cut(s)	205, 266, 773
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	2 cut(s)	200, 524
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	7 cut(s)	49, 111, 115, 213, 303, 538, 763
SfaNI	GCATC	2 cut(s)	332, 352
SinI	GGWCC	3 cut(s)	205, 266, 773
SmlI	CTYRAG	4 cut(s)	74, 224, 248, 512
SmoI	CTYRAG	4 cut(s)	74, 224, 248, 512
Sse9I	AATT	5 cut(s)	377, 561, 570, 637, 726
StyI	CCWWGG	2 cut(s)	90, 698
TaaI	ACNGT	2 cut(s)	388, 610
TaqI	TCGA	1 cut(s)	291
TasI	AATT	5 cut(s)	377, 561, 570, 637, 726
TatI	WGTACW	2 cut(s)	228, 451
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	3 cut(s)	225, 249, 569
Tru9I	TTAA	3 cut(s)	225, 249, 569
TscAI	CASTG	1 cut(s)	393
TspDTI	ATGAA	6 cut(s)	71, 111, 134, 390, 650, 738
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	393
Tth111I	GACNNNGTC	1 cut(s)	388
Vha464I	CTTAAG	2 cut(s)	224, 248
VpaK11BI	GGWCC	3 cut(s)	205, 266, 773
XapI	RAATTY	2 cut(s)	637, 726
XceI	RCATGY	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.