Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Forward (+)

623267 .. 625853

Gene Structure 2587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAAGCGCAAAGAGATACTTGAGAAGAAGAAGGCTAGGGATGAACTGATAAAGGTAGCTTGTGCGGAGAAAGACCATCTCTCTGCCTTTCATGCCTTTCGCCATTACCAAAGAAACGGCTTGTCTGCATGTCTGGAATCAGGAAGGGGGGACAAGCTGTCATCTTCTCTTAAGCAGTACATTCAAAATCTCCTTAAGGCTAATATGGAGGGGCCATATGGAACCGAGTGGCCAGTGGAAGAGAAGGTGAAGCGTAGGGAGATGGTTGCATCAGAAGCACGTTATATATTTGTCTATGAGGCTTTGGATGCAAGTGCAAGTGAATTGTTGACAGTGTCTGAGCAGGAGAGGACTGAAGCTGGTTGTGTGGAGGGGAGGGGATCCATGCTCGGGTTTGTGCATTTTCGCTTTGTCATAGAGGAAGATTTGCCTGTTCTTTATGTGTATGAGTTACAACTTGAGCCTCGTGTGCAAGGGAAAGGTCTCGGGAAGTTCCTAATGCAACTAATTGAGCTAATTGCTCGCAAGAATCACATGGGTGCTGTTGTTCTAACTGTTCAAAAGGCAAACTTGGTAGCGATGAATTTCTATACAAGTAAGCTGAGATATATTATCTCAACTATATCACCATCCAAAGTTGATCCATGGTTAGGAACTCAGAAAAGTTATGAAATTCTTTGCAAATCATTCAGTAATGATGCTAAAGCTATATTGGAGGGCCCAGGACATTGTGAGAAGAGACAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

249

Amino Acids

28.32

Weight (kDa)

8.94

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	123 - 198	1.4e-09	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	3 cut(s)	375, 388, 635
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	583, 672
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	390, 650
AflII	CTTAAG	2 cut(s)	170, 194
AgsI	TTSAA	2 cut(s)	185, 560
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	721
AleI	CACNNNNGTG	1 cut(s)	537
AluBI	AGCT	6 cut(s)	59, 157, 359, 514, 601, 707
AluI	AGCT	6 cut(s)	59, 157, 359, 514, 601, 707
Alw26I	GTCTC	2 cut(s)	488, 733
AlwI	GGATC	3 cut(s)	375, 388, 635
AlwNI	CAGNNNCTG	1 cut(s)	338
Ama87I	CYCGRG	2 cut(s)	389, 485
AoxI	GGCC	3 cut(s)	212, 230, 718
ApaI	GGGCCC	1 cut(s)	722
ApoI	RAATTY	2 cut(s)	583, 672
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	212, 718, 719
AsuHPI	GGTGA	2 cut(s)	259, 618
AvaI	CYCGRG	2 cut(s)	389, 485
BaeGI	GKGCMC	1 cut(s)	722
BalI	TGGCCA	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	722
BauI	CACGAG	1 cut(s)	465
BccI	CCATC	3 cut(s)	84, 256, 637
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	723
BcoDI	GTCTC	2 cut(s)	488, 733
BfaI	CTAG	1 cut(s)	36
BfrI	CTTAAG	2 cut(s)	170, 194
Bme1390I	CCNGG	1 cut(s)	723
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmeT110I	CYCGRG	2 cut(s)	389, 485
BmgT120I	GGNCC	3 cut(s)	212, 718, 719
BmiI	GGNNCC	4 cut(s)	213, 223, 382, 720
BmrFI	CCNGG	1 cut(s)	723
BmsI	GCATC	3 cut(s)	278, 298, 688
BpuEI	CTTGAG	2 cut(s)	41, 479
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	644, 721
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 650
Bse1I	ACTGG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	644, 721
BseGI	GGATG	3 cut(s)	46, 313, 629
BseLI	CCNNNNNNNGG	2 cut(s)	390, 650
BseMII	CTCAG	3 cut(s)	330, 593, 671
BseNI	ACTGG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	722
BshFI	GGCC	3 cut(s)	214, 232, 720
BsiHKCI	CYCGRG	2 cut(s)	389, 485
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	390, 650
BsmAI	GTCTC	2 cut(s)	488, 733
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	214, 232, 720
Bso31I	GGTCTC	1 cut(s)	488
BsoBI	CYCGRG	2 cut(s)	389, 485
Bsp120I	GGGCCC	1 cut(s)	718
Bsp1286I	GDGCHC	1 cut(s)	722
Bsp143I	GATC	2 cut(s)	380, 640
Bsp19I	CCATGG	1 cut(s)	644
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	3 cut(s)	214, 232, 720
BspCNI	CTCAG	3 cut(s)	331, 594, 670
BspLI	GGNNCC	4 cut(s)	213, 223, 382, 720
BspPI	GGATC	3 cut(s)	375, 388, 635
BspTI	CTTAAG	2 cut(s)	170, 194
BspTNI	GGTCTC	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	644, 721
BssMI	GATC	2 cut(s)	380, 640
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	644
Bst2BI	CACGAG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	2 cut(s)	334, 556
Bst6I	CTCTTC	2 cut(s)	234, 731
BstAFI	CTTAAG	2 cut(s)	170, 194
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	3 cut(s)	339, 602, 657
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	3 cut(s)	46, 313, 629
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	383, 643
BstMAI	GTCTC	2 cut(s)	488, 733
BstMBI	GATC	2 cut(s)	380, 640
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 275, 308, 469
BstNI	CCWGG	1 cut(s)	723
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	721
BstSLI	GKGCMC	1 cut(s)	722
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	3 cut(s)	214, 232, 720
BtgI	CCRYGG	1 cut(s)	644
BtgZI	GCGATG	1 cut(s)	593
BtsCI	GGATG	3 cut(s)	46, 313, 629
BtsIMutI	CAGTG	2 cut(s)	240, 339
Cac8I	GCNNGC	1 cut(s)	523
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	212, 718, 719
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	5 cut(s)	92, 129, 385, 535, 645
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	3 cut(s)	339, 602, 657
DpnI	GATC	2 cut(s)	382, 642
DpnII	GATC	2 cut(s)	380, 640
DriI	GACNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	234, 731
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EarI	CTCTTC	2 cut(s)	234, 731
Eco130I	CCWWGG	1 cut(s)	644
Eco24I	GRGCYC	1 cut(s)	722
Eco31I	GGTCTC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	375
Eco88I	CYCGRG	2 cut(s)	389, 485
EcoO109I	RGGNCCY	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	721
EcoT14I	CCWWGG	1 cut(s)	644
EcoT38I	GRGCYC	1 cut(s)	722
ErhI	CCWWGG	1 cut(s)	644
FaeI	CATG	5 cut(s)	95, 132, 388, 538, 648
FalI	AAGNNNNNCTT	3 cut(s)	35, 554, 586
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	5 cut(s)	91, 128, 384, 534, 644
FauNDI	CATATG	1 cut(s)	217
FokI	GGATG	3 cut(s)	53, 320, 616
FriOI	GRGCYC	1 cut(s)	722
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	214, 232, 720
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	95, 132, 388, 538, 648
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	2 cut(s)	137, 529
HphI	GGTGA	2 cut(s)	259, 618
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	3 cut(s)	274, 340, 660
Hpy188III	TCNNGA	3 cut(s)	134, 141, 487
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	3 cut(s)	25, 138, 238
HpyCH4III	ACNGT	2 cut(s)	334, 556
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	8 cut(s)	128, 269, 311, 317, 400, 472, 502, 681
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 275, 308, 469
HpyF3I	CTNAG	3 cut(s)	339, 602, 657
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	5 cut(s)	95, 132, 388, 538, 648
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	380, 640
LpnPI	CCDG	8 cut(s)	119, 126, 246, 329, 345, 444, 708, 735
LweI	GCATC	3 cut(s)	278, 298, 688
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	450
MalI	GATC	2 cut(s)	382, 642
MboI	GATC	2 cut(s)	380, 640
MboII	GAAGA	6 cut(s)	37, 40, 156, 251, 434, 748
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	722
MlsI	TGGCCA	1 cut(s)	232
MluCI	AATT	5 cut(s)	323, 507, 516, 583, 672
MluNI	TGGCCA	1 cut(s)	232
MnlI	CCTC	8 cut(s)	202, 292, 342, 364, 369, 412, 474, 709
Mox20I	TGGCCA	1 cut(s)	232
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	2 cut(s)	171, 195
MslI	CAYNNNNRTG	1 cut(s)	537
Msp20I	TGGCCA	1 cut(s)	232
MspCI	CTTAAG	2 cut(s)	170, 194
MspR9I	CCNGG	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	723
MwoI	GCNNNNNNNGC	4 cut(s)	92, 275, 308, 469
NcoI	CCATGG	1 cut(s)	644
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	2 cut(s)	380, 640
NlaIII	CATG	5 cut(s)	95, 132, 388, 538, 648
NlaIV	GGNNCC	4 cut(s)	213, 223, 382, 720
NspI	RCATGY	1 cut(s)	132
OliI	CACNNNNGTG	1 cut(s)	537
PfeI	GAWTC	2 cut(s)	137, 529
PflFI	GACNNNGTC	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	4 cut(s)	213, 223, 382, 720
PspOMI	GGGCCC	1 cut(s)	718
PspPI	GGNCC	3 cut(s)	212, 718, 719
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	380
PsyI	GACNNNGTC	1 cut(s)	334
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	2 cut(s)	171, 195
Sau3AI	GATC	2 cut(s)	380, 640
Sau96I	GGNCC	3 cut(s)	212, 718, 719
ScrFI	CCNGG	1 cut(s)	723
SduI	GDGCHC	1 cut(s)	722
SfaNI	GCATC	3 cut(s)	278, 298, 688
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	4 cut(s)	20, 170, 194, 458
SmoI	CTYRAG	4 cut(s)	20, 170, 194, 458
Sse9I	AATT	5 cut(s)	323, 507, 516, 583, 672
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	721
StyI	CCWWGG	1 cut(s)	644
TaaI	ACNGT	2 cut(s)	334, 556
TaiI	ACGT	1 cut(s)	283
TasI	AATT	5 cut(s)	323, 507, 516, 583, 672
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	137, 529
Tru1I	TTAA	2 cut(s)	171, 195
Tru9I	TTAA	2 cut(s)	171, 195
TscAI	CASTG	2 cut(s)	240, 339
TspDTI	ATGAA	5 cut(s)	17, 57, 80, 596, 684
TspRI	CASTG	2 cut(s)	240, 339
Tth111I	GACNNNGTC	1 cut(s)	334
Vha464I	CTTAAG	2 cut(s)	170, 194
XapI	RAATTY	2 cut(s)	583, 672
XceI	RCATGY	1 cut(s)	132
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.