Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Reverse (-)

68134901 .. 68137440

Gene Structure 2540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005504

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGTCGAAGGGAAATGCGAAGATTAAGAATAAGATGAAGCGCAAAGAGATACTTGAGAAGAAGAAGGCTATGGATGAACTGATAAAGGTAGCTTCTGCGGAGAAAGACCATCTCTCTGCCTTTCATGCCTTTCGCCATTACCAAAGAAACGGCTTGTCTGCATGTCTGGAATCAGGAAGAGGGGACAAGCTATCATCTTCTCTTAAGCAGTACATTCAAAATCTCCTTAAGGCTAATATGGAGGGGCCGTATGGAACCGAGTGGCCAGTGGAAGAGAAGGTGAAGCGTAGGGAGATGGTTGCATCAGAAGCACGTTATATATTTGTCTATGAGGCTTTGGATGCAAGTGCAAGTGAATTGTTGACAGTGCCTGAGCAGGAGAGGACTGAAGCTGGTTGTGTGGAGGGGAGGGGATCCATGCTCGGGTTTGTGCATTTTCGCTTTGTCATAGAGGAAGATTTGCCTGTTCTTTATGTGTATGAGTTACAACTTGAGCCTCGTGTACAAGGGAAAGGTCTCGGGAAGTTCCTAATGCAACTAATTGAGCTAATTGCTCGCAAGAATCACATGGGTGCTGTTGTTCTAACTGTTCAAAAGGCAAACTTGGTAGCGATGAATTTCTATACAAGTAAGCTGAGATATGTTATCTCAACTATATCACCATCCAAAGTTGATCCATGGTTAGGAACTCAGAAAAGTTATGAAATTCTTTGCAAATCATTCAGTAATGATGCTAAAGCTATCTTGGAGGGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

254

Amino Acids

28.64

Weight (kDa)

9.04

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	135 - 210	1.4e-09	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	3 cut(s)	411, 424, 671
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	2 cut(s)	619, 708
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	215, 507
AfiI	CCNNNNNNNGG	2 cut(s)	426, 686
AflII	CTTAAG	2 cut(s)	206, 230
AgsI	TTSAA	2 cut(s)	221, 596
AleI	CACNNNNGTG	1 cut(s)	573
AluBI	AGCT	6 cut(s)	95, 193, 395, 550, 637, 743
AluI	AGCT	6 cut(s)	95, 193, 395, 550, 637, 743
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	3 cut(s)	411, 424, 671
AlwNI	CAGNNNCTG	1 cut(s)	374
Ama87I	CYCGRG	2 cut(s)	425, 521
AoxI	GGCC	3 cut(s)	248, 266, 754
ApaI	GGGCCC	1 cut(s)	758
ApoI	RAATTY	2 cut(s)	619, 708
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	3 cut(s)	248, 754, 755
AsuHPI	GGTGA	2 cut(s)	295, 654
AvaI	CYCGRG	2 cut(s)	425, 521
BaeGI	GKGCMC	1 cut(s)	758
BalI	TGGCCA	1 cut(s)	268
BamHI	GGATCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	758
BauI	CACGAG	1 cut(s)	501
BccI	CCATC	3 cut(s)	120, 292, 673
BceAI	ACGGC	2 cut(s)	169, 235
BcoDI	GTCTC	1 cut(s)	524
BfrI	CTTAAG	2 cut(s)	206, 230
BmeT110I	CYCGRG	2 cut(s)	425, 521
BmgT120I	GGNCC	3 cut(s)	248, 754, 755
BmiI	GGNNCC	4 cut(s)	249, 259, 418, 756
BmsI	GCATC	3 cut(s)	314, 334, 724
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	77, 515
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	680
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 686
Bse1I	ACTGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	3 cut(s)	82, 349, 665
BseLI	CCNNNNNNNGG	2 cut(s)	426, 686
BseMII	CTCAG	3 cut(s)	366, 629, 707
BseNI	ACTGG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	758
BshFI	GGCC	3 cut(s)	250, 268, 756
BsiHKCI	CYCGRG	2 cut(s)	425, 521
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	426, 686
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	3 cut(s)	250, 268, 756
Bso31I	GGTCTC	1 cut(s)	524
BsoBI	CYCGRG	2 cut(s)	425, 521
Bsp120I	GGGCCC	1 cut(s)	754
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	2 cut(s)	416, 676
Bsp19I	CCATGG	1 cut(s)	680
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	3 cut(s)	250, 268, 756
BspCNI	CTCAG	3 cut(s)	367, 630, 706
BspLI	GGNNCC	4 cut(s)	249, 259, 418, 756
BspPI	GGATC	3 cut(s)	411, 424, 671
BspTI	CTTAAG	2 cut(s)	206, 230
BspTNI	GGTCTC	1 cut(s)	524
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	2 cut(s)	416, 676
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	680
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	370, 592
Bst6I	CTCTTC	2 cut(s)	175, 270
BstAFI	CTTAAG	2 cut(s)	206, 230
BstAUI	TGTACA	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	3 cut(s)	375, 638, 693
BstDSI	CCRYGG	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	82, 349, 665
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	2 cut(s)	419, 679
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	2 cut(s)	416, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 311, 344
BstNSI	RCATGY	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	758
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	250, 268, 756
BtgI	CCRYGG	1 cut(s)	680
BtgZI	GCGATG	1 cut(s)	629
BtsCI	GGATG	3 cut(s)	82, 349, 665
BtsIMutI	CAGTG	2 cut(s)	276, 375
Cac8I	GCNNGC	1 cut(s)	559
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	3 cut(s)	248, 754, 755
Csp6I	GTAC	2 cut(s)	214, 506
CviAII	CATG	6 cut(s)	128, 165, 421, 571, 681, 759
CviQI	GTAC	2 cut(s)	214, 506
DdeI	CTNAG	3 cut(s)	375, 638, 693
DpnI	GATC	2 cut(s)	418, 678
DpnII	GATC	2 cut(s)	416, 676
EaeI	YGGCCR	1 cut(s)	266
Eam1104I	CTCTTC	2 cut(s)	175, 270
EarI	CTCTTC	2 cut(s)	175, 270
Eco130I	CCWWGG	1 cut(s)	680
Eco24I	GRGCYC	1 cut(s)	758
Eco31I	GGTCTC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	411
Eco88I	CYCGRG	2 cut(s)	425, 521
EcoO109I	RGGNCCY	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	680
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	1 cut(s)	680
FaeI	CATG	6 cut(s)	131, 168, 424, 574, 684, 762
FalI	AAGNNNNNCTT	4 cut(s)	39, 71, 590, 622
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	6 cut(s)	127, 164, 420, 570, 680, 758
FokI	GGATG	3 cut(s)	89, 356, 652
FriOI	GRGCYC	1 cut(s)	758
GlaI	GCGC	1 cut(s)	44
HaeIII	GGCC	3 cut(s)	250, 268, 756
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	6 cut(s)	131, 168, 424, 574, 684, 762
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	3 cut(s)	5, 173, 565
HphI	GGTGA	2 cut(s)	295, 654
Hpy166II	GTNNAC	2 cut(s)	366, 506
Hpy188I	TCNGA	2 cut(s)	310, 696
Hpy188III	TCNNGA	3 cut(s)	170, 177, 523
Hpy8I	GTNNAC	2 cut(s)	366, 506
HpyAV	CCTTC	3 cut(s)	4, 61, 274
HpyCH4III	ACNGT	2 cut(s)	370, 592
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	7 cut(s)	164, 305, 347, 353, 436, 538, 717
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 311, 344
HpyF3I	CTNAG	3 cut(s)	375, 638, 693
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	6 cut(s)	131, 168, 424, 574, 684, 762
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	416, 676
LpnPI	CCDG	7 cut(s)	155, 162, 282, 365, 381, 387, 480
LweI	GCATC	3 cut(s)	314, 334, 724
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	486
MalI	GATC	2 cut(s)	418, 678
MboI	GATC	2 cut(s)	416, 676
MboII	GAAGA	7 cut(s)	34, 73, 76, 192, 192, 287, 470
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	758
MlsI	TGGCCA	1 cut(s)	268
MluCI	AATT	5 cut(s)	359, 543, 552, 619, 708
MluNI	TGGCCA	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	9 cut(s)	176, 238, 328, 378, 400, 405, 448, 510, 745
Mox20I	TGGCCA	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	3 cut(s)	27, 207, 231
MslI	CAYNNNNRTG	1 cut(s)	573
Msp20I	TGGCCA	1 cut(s)	268
MspCI	CTTAAG	2 cut(s)	206, 230
MwoI	GCNNNNNNNGC	3 cut(s)	128, 311, 344
NcoI	CCATGG	1 cut(s)	680
NdeII	GATC	2 cut(s)	416, 676
NlaIII	CATG	6 cut(s)	131, 168, 424, 574, 684, 762
NlaIV	GGNNCC	4 cut(s)	249, 259, 418, 756
NspI	RCATGY	1 cut(s)	168
OliI	CACNNNNGTG	1 cut(s)	573
PfeI	GAWTC	2 cut(s)	173, 565
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	4 cut(s)	249, 259, 418, 756
PspOMI	GGGCCC	1 cut(s)	754
PspPI	GGNCC	3 cut(s)	248, 754, 755
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	2 cut(s)	215, 507
RsaNI	GTAC	2 cut(s)	214, 506
RseI	CAYNNNNRTG	1 cut(s)	573
SaqAI	TTAA	3 cut(s)	27, 207, 231
Sau3AI	GATC	2 cut(s)	416, 676
Sau96I	GGNCC	3 cut(s)	248, 754, 755
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	758
SfaNI	GCATC	3 cut(s)	314, 334, 724
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	4 cut(s)	56, 206, 230, 494
SmoI	CTYRAG	4 cut(s)	56, 206, 230, 494
Sse9I	AATT	5 cut(s)	359, 543, 552, 619, 708
SsiI	CCGC	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	2 cut(s)	370, 592
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	8
TasI	AATT	5 cut(s)	359, 543, 552, 619, 708
TatI	WGTACW	2 cut(s)	213, 505
TfiI	GAWTC	2 cut(s)	173, 565
Tru1I	TTAA	3 cut(s)	27, 207, 231
Tru9I	TTAA	3 cut(s)	27, 207, 231
TscAI	CASTG	2 cut(s)	276, 375
TspDTI	ATGAA	5 cut(s)	53, 93, 116, 632, 720
TspRI	CASTG	2 cut(s)	276, 375
Vha464I	CTTAAG	2 cut(s)	206, 230
XapI	RAATTY	2 cut(s)	619, 708
XceI	RCATGY	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.