Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Forward (+)

737508 .. 741657

Gene Structure 4150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG009300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGTCGAAGGGAAATGCCCCCAAGATTAGGAATAAGATGAAGCGCAAAGAGATACTTGAGAAGAAGAAGGCTGTGGATGAACTGATAAAGGTAGCTTCTGCGGAGAAAGACCATCTCTCTGCCTTTCATGCCTTTCGCAATTACCAAAGAAACGGCTTGTCTGCATGTCTGGAATCAGGAAGAGGGGACAAGCTGTCATCTTCTCTTAAGCAGTACATTCAAAATCTCCTTAAGGCTAATATGGAGGGGCCATATGGAAACGAGTGGCCAGTGGAAGAGAAGGTGAAGCGTAGGGAGATGGTTGCATCAGAAGCACGTTATATATTTGTCTATGAGGCTTTGGATGCAAGTGCAAGTGAATTGTTGACAGTGTCTGAGCAGGAGAGGACTGAAGCTGGTTGTGTGGAGGGGAGGGGATCCATGCTCGGGTTTGTGCATTTTCGCTTTGTCATAGAGGAAGATTTGCCTGTTCTTTATGTGTATGAGTTACAACTTGAGCCTCGTGTGCAAGGGAAAGGTCTCGGGAAGTTCCTAATGCAACTAATTGAGCTAATTGCTCGCAAGGTGCTGAATTCCGTCTCTTCTCCCATTTTGTGCTTTTATTTTATAGACATCTCAGTATTATGCAAAATGGAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

214

Amino Acids

24.42

Weight (kDa)

8.57

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	2 cut(s)	414, 427
AcoI	YGGCCR	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	30, 429
AflII	CTTAAG	2 cut(s)	209, 233
AgsI	TTSAA	1 cut(s)	224
AhdI	GACNNNNNGTC	1 cut(s)	196
AluBI	AGCT	4 cut(s)	98, 196, 398, 553
AluI	AGCT	4 cut(s)	98, 196, 398, 553
Alw26I	GTCTC	2 cut(s)	527, 586
AlwI	GGATC	2 cut(s)	414, 427
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	2 cut(s)	428, 524
AoxI	GGCC	2 cut(s)	251, 269
ApoI	RAATTY	1 cut(s)	574
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	2 cut(s)	428, 524
BalI	TGGCCA	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	504
BccI	CCATC	2 cut(s)	123, 295
BceAI	ACGGC	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	527, 586
BfrI	CTTAAG	2 cut(s)	209, 233
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmeT110I	CYCGRG	2 cut(s)	428, 524
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	252, 421
BmsI	GCATC	2 cut(s)	317, 337
BpuEI	CTTGAG	2 cut(s)	80, 518
BsaI	GGTCTC	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 429
Bse1I	ACTGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	85, 352
BseLI	CCNNNNNNNGG	2 cut(s)	30, 429
BseMII	CTCAG	2 cut(s)	369, 633
BseNI	ACTGG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	253, 271
BsiHKCI	CYCGRG	2 cut(s)	428, 524
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	30, 429
BsmAI	GTCTC	2 cut(s)	527, 586
BsmBI	CGTCTC	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	253, 271
Bso31I	GGTCTC	1 cut(s)	527
BsoBI	CYCGRG	2 cut(s)	428, 524
Bsp143I	GATC	1 cut(s)	419
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	253, 271
BspCNI	CTCAG	2 cut(s)	370, 632
BspLI	GGNNCC	2 cut(s)	252, 421
BspPI	GGATC	2 cut(s)	414, 427
BspTI	CTTAAG	2 cut(s)	209, 233
BspTNI	GGTCTC	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	272
BssMI	GATC	1 cut(s)	419
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	3 cut(s)	178, 273, 589
BstAFI	CTTAAG	2 cut(s)	209, 233
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	2 cut(s)	378, 619
BstF5I	GGATG	2 cut(s)	85, 352
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	1 cut(s)	422
BstMAI	GTCTC	2 cut(s)	527, 586
BstMBI	GATC	1 cut(s)	419
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 314, 347, 508
BstNSI	RCATGY	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	253, 271
BtsCI	GGATG	2 cut(s)	85, 352
BtsIMutI	CAGTG	2 cut(s)	279, 378
Cac8I	GCNNGC	1 cut(s)	562
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	3 cut(s)	131, 168, 424
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	378, 619
DpnI	GATC	1 cut(s)	421
DpnII	GATC	1 cut(s)	419
DriI	GACNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	269
Eam1104I	CTCTTC	3 cut(s)	178, 273, 589
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	3 cut(s)	178, 273, 589
Eco31I	GGTCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	2 cut(s)	428, 524
EcoRI	GAATTC	1 cut(s)	574
Esp3I	CGTCTC	1 cut(s)	586
FaeI	CATG	3 cut(s)	134, 171, 427
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	3 cut(s)	130, 167, 423
FauNDI	CATATG	1 cut(s)	256
FokI	GGATG	2 cut(s)	92, 359
GlaI	GCGC	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	253, 271
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	134, 171, 427
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	2 cut(s)	5, 176
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	2 cut(s)	313, 379
Hpy188III	TCNNGA	3 cut(s)	173, 180, 526
Hpy8I	GTNNAC	1 cut(s)	369
HpyAV	CCTTC	3 cut(s)	4, 64, 277
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	8 cut(s)	167, 308, 350, 356, 439, 511, 541, 630
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 314, 347, 508
HpyF3I	CTNAG	2 cut(s)	378, 619
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	3 cut(s)	134, 171, 427
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	419
LpnPI	CCDG	6 cut(s)	158, 165, 285, 368, 384, 483
LweI	GCATC	2 cut(s)	317, 337
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	489
MalI	GATC	1 cut(s)	421
MboI	GATC	1 cut(s)	419
MboII	GAAGA	7 cut(s)	76, 79, 195, 195, 290, 473, 576
MflI	RGATCY	1 cut(s)	419
MlsI	TGGCCA	1 cut(s)	271
MluCI	AATT	5 cut(s)	142, 362, 546, 555, 574
MluNI	TGGCCA	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	8 cut(s)	179, 241, 331, 381, 403, 408, 451, 513
Mox20I	TGGCCA	1 cut(s)	271
MscI	TGGCCA	1 cut(s)	271
MseI	TTAA	2 cut(s)	210, 234
Msp20I	TGGCCA	1 cut(s)	271
MspCI	CTTAAG	2 cut(s)	209, 233
MwoI	GCNNNNNNNGC	4 cut(s)	131, 314, 347, 508
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	1 cut(s)	419
NlaIII	CATG	3 cut(s)	134, 171, 427
NlaIV	GGNNCC	2 cut(s)	252, 421
NspI	RCATGY	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	252, 421
PspPI	GGNCC	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	419
PsyI	GACNNNGTC	1 cut(s)	373
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	210, 234
Sau3AI	GATC	1 cut(s)	419
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	317, 337
SmlI	CTYRAG	4 cut(s)	59, 209, 233, 497
SmoI	CTYRAG	4 cut(s)	59, 209, 233, 497
Sse9I	AATT	5 cut(s)	142, 362, 546, 555, 574
SsiI	CCGC	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	8
TasI	AATT	5 cut(s)	142, 362, 546, 555, 574
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	210, 234
Tru9I	TTAA	2 cut(s)	210, 234
TscAI	CASTG	2 cut(s)	279, 378
TspDTI	ATGAA	3 cut(s)	56, 96, 119
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	2 cut(s)	279, 378
Tth111I	GACNNNGTC	1 cut(s)	373
Vha464I	CTTAAG	2 cut(s)	209, 233
XapI	RAATTY	1 cut(s)	574
XceI	RCATGY	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.