Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Forward (+)

760874 .. 762845

Gene Structure 1972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG009200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAGTCGAAGGGAAATGCCCCACCCAAGATTAAGAATAAGATGAAGCGCAAAGAGATACTTGAGAAGAAGAAGGCTAGGGATGAACTGATAAAGGTAGCTTGTGCGGAGAAAGACCATCTCTCTGCCCTTCATGCCTTTCGCCATTACCAAAGAAACGGCTTGTCTGCATGTCTGGAATCAGGAAGAGGGGACAAGCTATCAGCTTCTCTTAAGCAGTACATTCAAAATCTCCTTAAGGCTAATATGGAGGGGCCATATGGAACCGAGTGGCCAGTGGAAGAGAAGGTGAAGCGTAGGGAGATGGTTGCATCAGAAGCACGTTATATATTTGTCCATGAGGCTTTGGATGCAAGTGCAAGTGAATTGTTGACAGTGTCTGAGCAGGAGAGGACTGAAGCTGGTTGTGTGGAGGGGAGGGGATCCATGCTCGGGTTTGTGCATTTTCGCTTTGTCATAGAGGAAGATTTGCCTGTTCTTTATGTGTATGAGTTACAACTTGAGCCTCGTGTGCAAGGGAAAGGTCTCGGGAAGTTCCTAATGCAACTAATTGAGCTAATTGCTCGCAAGAATCACATGGGTGCTGTTGTTCTAACTGTTCAAAAGGCAAACTTGGTAGCGATGAATTTCTATACAAGTAAGCTGAGATATGTTATCTCAACTATATCACCATCCAAAGTTGATCCATGGTTAGGAACTCAGAAAAGTTATGAAATTCTTTGGAAATCATTCAGTAATGATGCTAAAGCTATATTGGAGAGTAGTGGAAACTTTATAGTTCCAGATGTGGGACTGATACTGTGGCAGTGGACAATATATTCAGAAGAGTTCCTTATAGGCTTGCTTTGTTTCCTTATTGATCTTGTTCTTTCAACTCTTATAGTTCCAGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

298

Amino Acids

33.78

Weight (kDa)

7.65

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	137 - 212	1.7e-09	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	3 cut(s)	417, 430, 677
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	625, 714
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	3 cut(s)	432, 692, 788
AflII	CTTAAG	2 cut(s)	212, 236
AgsI	TTSAA	3 cut(s)	227, 602, 873
AleI	CACNNNNGTG	1 cut(s)	579
AluBI	AGCT	7 cut(s)	101, 199, 206, 401, 556, 643, 749
AluI	AGCT	7 cut(s)	101, 199, 206, 401, 556, 643, 749
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	3 cut(s)	417, 430, 677
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	2 cut(s)	431, 527
AoxI	GGCC	2 cut(s)	254, 272
ApoI	RAATTY	2 cut(s)	625, 714
Asp700I	GAANNNNTTC	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	301, 660
AvaI	CYCGRG	2 cut(s)	431, 527
BalI	TGGCCA	1 cut(s)	274
BamHI	GGATCC	1 cut(s)	422
BauI	CACGAG	1 cut(s)	507
BccI	CCATC	3 cut(s)	126, 298, 679
BceAI	ACGGC	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	78
BfrI	CTTAAG	2 cut(s)	212, 236
BmeT110I	CYCGRG	2 cut(s)	431, 527
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	255, 265, 424
BmsI	GCATC	3 cut(s)	320, 340, 730
BpuEI	CTTGAG	2 cut(s)	83, 521
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	3 cut(s)	432, 692, 788
Bse1I	ACTGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	686
BseGI	GGATG	3 cut(s)	88, 355, 671
BseLI	CCNNNNNNNGG	3 cut(s)	432, 692, 788
BseMII	CTCAG	3 cut(s)	372, 635, 713
BseNI	ACTGG	1 cut(s)	275
BshFI	GGCC	2 cut(s)	256, 274
BsiHKCI	CYCGRG	2 cut(s)	431, 527
BslFI	GGGAC	2 cut(s)	206, 804
BslI	CCNNNNNNNGG	3 cut(s)	432, 692, 788
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	206, 804
BsnI	GGCC	2 cut(s)	256, 274
Bso31I	GGTCTC	1 cut(s)	530
BsoBI	CYCGRG	2 cut(s)	431, 527
Bsp143I	GATC	3 cut(s)	422, 682, 859
Bsp19I	CCATGG	1 cut(s)	686
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	2 cut(s)	256, 274
BspCNI	CTCAG	3 cut(s)	373, 636, 712
BspLI	GGNNCC	3 cut(s)	255, 265, 424
BspPI	GGATC	3 cut(s)	417, 430, 677
BspTI	CTTAAG	2 cut(s)	212, 236
BspTNI	GGTCTC	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	686
BssMI	GATC	3 cut(s)	422, 682, 859
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	686
Bst2BI	CACGAG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	376, 598, 801
Bst6I	CTCTTC	3 cut(s)	181, 276, 819
BstAFI	CTTAAG	2 cut(s)	212, 236
BstC8I	GCNNGC	2 cut(s)	565, 842
BstDEI	CTNAG	3 cut(s)	381, 644, 699
BstDSI	CCRYGG	1 cut(s)	686
BstF5I	GGATG	3 cut(s)	88, 355, 671
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	3 cut(s)	425, 685, 862
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	3 cut(s)	422, 682, 859
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 317, 350, 511
BstNSI	RCATGY	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	2 cut(s)	256, 274
BtgI	CCRYGG	1 cut(s)	686
BtgZI	GCGATG	1 cut(s)	635
BtsCI	GGATG	3 cut(s)	88, 355, 671
BtsI	GCAGTG	1 cut(s)	812
BtsIMutI	CAGTG	3 cut(s)	282, 381, 812
Cac8I	GCNNGC	2 cut(s)	565, 842
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	6 cut(s)	134, 171, 338, 427, 577, 687
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	381, 644, 699
DpnI	GATC	3 cut(s)	424, 684, 861
DpnII	GATC	3 cut(s)	422, 682, 859
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	3 cut(s)	181, 276, 819
EarI	CTCTTC	3 cut(s)	181, 276, 819
Eco130I	CCWWGG	1 cut(s)	686
Eco31I	GGTCTC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	417
Eco88I	CYCGRG	2 cut(s)	431, 527
EcoT14I	CCWWGG	1 cut(s)	686
ErhI	CCWWGG	1 cut(s)	686
FaeI	CATG	6 cut(s)	137, 174, 341, 430, 580, 690
FalI	AAGNNNNNCTT	6 cut(s)	45, 77, 596, 628, 816, 848
FaqI	GGGAC	2 cut(s)	206, 804
FatI	CATG	6 cut(s)	133, 170, 337, 426, 576, 686
FauNDI	CATATG	1 cut(s)	259
FokI	GGATG	3 cut(s)	95, 362, 658
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	256, 274
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	137, 174, 341, 430, 580, 690
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	3 cut(s)	5, 179, 571
HphI	GGTGA	2 cut(s)	301, 660
Hpy166II	GTNNAC	2 cut(s)	372, 810
Hpy188I	TCNGA	4 cut(s)	316, 382, 702, 823
Hpy188III	TCNNGA	5 cut(s)	176, 183, 529, 782, 887
Hpy8I	GTNNAC	2 cut(s)	372, 810
HpyAV	CCTTC	4 cut(s)	4, 67, 140, 280
HpyCH4III	ACNGT	3 cut(s)	376, 598, 801
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	7 cut(s)	170, 311, 353, 359, 442, 514, 544
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 317, 350, 511
HpyF3I	CTNAG	3 cut(s)	381, 644, 699
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	6 cut(s)	137, 174, 341, 430, 580, 690
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	422, 682, 859
LpnPI	CCDG	7 cut(s)	161, 168, 288, 371, 387, 486, 795
LweI	GCATC	3 cut(s)	320, 340, 730
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	492
MalI	GATC	3 cut(s)	424, 684, 861
MboI	GATC	3 cut(s)	422, 682, 859
MboII	GAAGA	6 cut(s)	79, 82, 198, 293, 476, 836
MflI	RGATCY	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	274
MluCI	AATT	5 cut(s)	365, 549, 558, 625, 714
MluNI	TGGCCA	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	8 cut(s)	182, 244, 334, 384, 406, 411, 454, 516
Mox20I	TGGCCA	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	728
MscI	TGGCCA	1 cut(s)	274
MseI	TTAA	3 cut(s)	33, 213, 237
MslI	CAYNNNNRTG	1 cut(s)	579
Msp20I	TGGCCA	1 cut(s)	274
MspCI	CTTAAG	2 cut(s)	212, 236
MwoI	GCNNNNNNNGC	4 cut(s)	134, 317, 350, 511
NcoI	CCATGG	1 cut(s)	686
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	3 cut(s)	422, 682, 859
NlaIII	CATG	6 cut(s)	137, 174, 341, 430, 580, 690
NlaIV	GGNNCC	3 cut(s)	255, 265, 424
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	579
PdmI	GAANNNNTTC	1 cut(s)	728
PfeI	GAWTC	2 cut(s)	179, 571
PflFI	GACNNNGTC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	255, 265, 424
PspPI	GGNCC	1 cut(s)	254
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	422
PsyI	GACNNNGTC	1 cut(s)	376
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	3 cut(s)	33, 213, 237
Sau3AI	GATC	3 cut(s)	422, 682, 859
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	14
SfaNI	GCATC	3 cut(s)	320, 340, 730
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	4 cut(s)	62, 212, 236, 500
SmoI	CTYRAG	4 cut(s)	62, 212, 236, 500
Sse9I	AATT	5 cut(s)	365, 549, 558, 625, 714
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	686
TaaI	ACNGT	3 cut(s)	376, 598, 801
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	8
TasI	AATT	5 cut(s)	365, 549, 558, 625, 714
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	179, 571
Tru1I	TTAA	3 cut(s)	33, 213, 237
Tru9I	TTAA	3 cut(s)	33, 213, 237
TscAI	CASTG	3 cut(s)	282, 381, 812
TspDTI	ATGAA	5 cut(s)	59, 99, 122, 638, 726
TspRI	CASTG	3 cut(s)	282, 381, 812
Tth111I	GACNNNGTC	1 cut(s)	376
Vha464I	CTTAAG	2 cut(s)	212, 236
XapI	RAATTY	2 cut(s)	625, 714
XceI	RCATGY	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	728
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.