Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Forward (+)

589002 .. 591564

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG009200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAGTCGAAGGGAAATGCCCCCAAGATTAAGAATAAGATGAAGCGCAAAGAGATACTTGAGAAGAAGAAGGCTATGGATGAACTGATAAAGGTAGCTTCTGCGGAGAAAGACCATCTCTCTGCCTTTCATGCCTTTCGCCATTACCAAAGAAACGGCTTGTCTGCATGTCTGGAATCAGGAAGAGGGGACAAGCTATCATCTTCTCTTAAGCACTACATTCAAAATCTCCTTAAGGCTAATATGGAGGGGCCATATGGAACCGAGTGGCCAGTGGAAGAGAAGGTGAAGCGTAGGGACATGGTTGCATCAGAAGCACGTTATATATTTGTCTATGAGGCTTTGGATGCAAGTGCAAGTGAATTGTTGACAGTGTCTGAGCAGGAGAGGACTGAAGCTGGTTGTGTGGAGGGGAGGAGATCCATGCTCGGGTTTGTGCATTTTCGCTTTGTCATAGAGGAAGATTTGCCTGTTCTTTATGTGTATGAGTTACAACTTGAGCCTCGCGTACAAGGGAAAGGTCTCGGGAAGTTCCTAATGCAACTAATTGAGCTAATTGCTCGCAAGAATCACATGGATGCTGTTGTTCTAACTGTTCAAAAGGCAAACTTGGTAGCGATGAATTTCTATACAAGTAAGCTGAGATATGTTATCTCAACTATATCACCATCCAAAGTTGATCCATGGTTAGGAACTCAGAAAAGTTATGAAATTCTTTGCAAATCATTCAGTAATGATGCTAAAGCTATCTTGGAGGGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

254

Amino Acids

28.88

Weight (kDa)

9.04

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	142 - 211	2.7e-09	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	507
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	2 cut(s)	414, 674
AcoI	YGGCCR	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	622, 711
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	2 cut(s)	429, 689
AflII	CTTAAG	2 cut(s)	209, 233
AgsI	TTSAA	2 cut(s)	224, 599
AluBI	AGCT	6 cut(s)	98, 196, 398, 553, 640, 746
AluI	AGCT	6 cut(s)	98, 196, 398, 553, 640, 746
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	2 cut(s)	414, 674
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	2 cut(s)	428, 524
AoxI	GGCC	3 cut(s)	251, 269, 757
ApaI	GGGCCC	1 cut(s)	761
ApoI	RAATTY	2 cut(s)	622, 711
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	3 cut(s)	251, 757, 758
AsuHPI	GGTGA	2 cut(s)	298, 657
AvaI	CYCGRG	2 cut(s)	428, 524
BaeGI	GKGCMC	1 cut(s)	761
BalI	TGGCCA	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	761
BccI	CCATC	2 cut(s)	123, 676
BceAI	ACGGC	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	527
BfrI	CTTAAG	2 cut(s)	209, 233
BmeT110I	CYCGRG	2 cut(s)	428, 524
BmgT120I	GGNCC	3 cut(s)	251, 757, 758
BmiI	GGNNCC	3 cut(s)	252, 262, 759
BmsI	GCATC	4 cut(s)	317, 337, 568, 727
BpuEI	CTTGAG	2 cut(s)	80, 518
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	2 cut(s)	429, 689
Bse1I	ACTGG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	4 cut(s)	85, 352, 583, 668
BseLI	CCNNNNNNNGG	2 cut(s)	429, 689
BseMII	CTCAG	3 cut(s)	369, 632, 710
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	761
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	3 cut(s)	253, 271, 759
BsiHKCI	CYCGRG	2 cut(s)	428, 524
BslFI	GGGAC	2 cut(s)	203, 311
BslI	CCNNNNNNNGG	2 cut(s)	429, 689
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	2 cut(s)	203, 311
BsnI	GGCC	3 cut(s)	253, 271, 759
Bso31I	GGTCTC	1 cut(s)	527
BsoBI	CYCGRG	2 cut(s)	428, 524
Bsp120I	GGGCCC	1 cut(s)	757
Bsp1286I	GDGCHC	1 cut(s)	761
Bsp143I	GATC	2 cut(s)	419, 679
Bsp19I	CCATGG	1 cut(s)	683
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	3 cut(s)	253, 271, 759
BspCNI	CTCAG	3 cut(s)	370, 633, 709
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	252, 262, 759
BspPI	GGATC	2 cut(s)	414, 674
BspTI	CTTAAG	2 cut(s)	209, 233
BspTNI	GGTCTC	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	683
BssMI	GATC	2 cut(s)	419, 679
BssT1I	CCWWGG	1 cut(s)	683
Bst4CI	ACNGT	2 cut(s)	373, 595
Bst6I	CTCTTC	2 cut(s)	178, 273
BstAFI	CTTAAG	2 cut(s)	209, 233
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	3 cut(s)	378, 641, 696
BstDSI	CCRYGG	1 cut(s)	683
BstF5I	GGATG	4 cut(s)	85, 352, 583, 668
BstFNI	CGCG	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	422, 682
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	2 cut(s)	419, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 314, 347
BstNSI	RCATGY	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	761
BstUI	CGCG	1 cut(s)	507
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BsuRI	GGCC	3 cut(s)	253, 271, 759
BtgI	CCRYGG	1 cut(s)	683
BtgZI	GCGATG	1 cut(s)	632
BtsCI	GGATG	4 cut(s)	85, 352, 583, 668
BtsIMutI	CAGTG	2 cut(s)	279, 378
Cac8I	GCNNGC	1 cut(s)	562
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	3 cut(s)	251, 757, 758
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	7 cut(s)	131, 168, 301, 424, 574, 684, 762
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	3 cut(s)	378, 641, 696
DpnI	GATC	2 cut(s)	421, 681
DpnII	GATC	2 cut(s)	419, 679
EaeI	YGGCCR	1 cut(s)	269
Eam1104I	CTCTTC	2 cut(s)	178, 273
EarI	CTCTTC	2 cut(s)	178, 273
Eco130I	CCWWGG	1 cut(s)	683
Eco24I	GRGCYC	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	2 cut(s)	428, 524
EcoO109I	RGGNCCY	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	683
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	1 cut(s)	683
FaeI	CATG	7 cut(s)	134, 171, 304, 427, 577, 687, 765
FalI	AAGNNNNNCTT	4 cut(s)	42, 74, 593, 625
FaqI	GGGAC	2 cut(s)	203, 311
FatI	CATG	7 cut(s)	130, 167, 300, 423, 573, 683, 761
FauNDI	CATATG	1 cut(s)	256
FokI	GGATG	4 cut(s)	92, 359, 590, 655
FriOI	GRGCYC	1 cut(s)	761
GlaI	GCGC	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	253, 271, 759
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	7 cut(s)	134, 171, 304, 427, 577, 687, 765
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	3 cut(s)	5, 176, 568
HphI	GGTGA	2 cut(s)	298, 657
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	3 cut(s)	313, 379, 699
Hpy188III	TCNNGA	3 cut(s)	173, 180, 526
Hpy8I	GTNNAC	1 cut(s)	369
HpyAV	CCTTC	3 cut(s)	4, 64, 277
HpyCH4III	ACNGT	2 cut(s)	373, 595
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	7 cut(s)	167, 308, 350, 356, 439, 541, 720
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 314, 347
HpyF3I	CTNAG	3 cut(s)	378, 641, 696
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	7 cut(s)	134, 171, 304, 427, 577, 687, 765
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	419, 679
LpnPI	CCDG	6 cut(s)	158, 165, 285, 368, 384, 483
LweI	GCATC	4 cut(s)	317, 337, 568, 727
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	489
MalI	GATC	2 cut(s)	421, 681
MboI	GATC	2 cut(s)	419, 679
MboII	GAAGA	6 cut(s)	76, 79, 195, 195, 290, 473
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	761
MlsI	TGGCCA	1 cut(s)	271
MluCI	AATT	5 cut(s)	362, 546, 555, 622, 711
MluNI	TGGCCA	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	9 cut(s)	179, 241, 331, 381, 403, 408, 451, 513, 748
Mox20I	TGGCCA	1 cut(s)	271
MscI	TGGCCA	1 cut(s)	271
MseI	TTAA	3 cut(s)	30, 210, 234
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	271
MspCI	CTTAAG	2 cut(s)	209, 233
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	131, 314, 347
NcoI	CCATGG	1 cut(s)	683
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	2 cut(s)	419, 679
NlaIII	CATG	7 cut(s)	134, 171, 304, 427, 577, 687, 765
NlaIV	GGNNCC	3 cut(s)	252, 262, 759
NspI	RCATGY	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	176, 568
PflFI	GACNNNGTC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	252, 262, 759
PspOMI	GGGCCC	1 cut(s)	757
PspPI	GGNCC	3 cut(s)	251, 757, 758
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	419
PsyI	GACNNNGTC	1 cut(s)	373
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	30, 210, 234
Sau3AI	GATC	2 cut(s)	419, 679
Sau96I	GGNCC	3 cut(s)	251, 757, 758
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	761
SfaNI	GCATC	4 cut(s)	317, 337, 568, 727
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	4 cut(s)	59, 209, 233, 497
SmoI	CTYRAG	4 cut(s)	59, 209, 233, 497
Sse9I	AATT	5 cut(s)	362, 546, 555, 622, 711
SsiI	CCGC	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	683
TaaI	ACNGT	2 cut(s)	373, 595
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	8
TasI	AATT	5 cut(s)	362, 546, 555, 622, 711
TfiI	GAWTC	2 cut(s)	176, 568
Tru1I	TTAA	3 cut(s)	30, 210, 234
Tru9I	TTAA	3 cut(s)	30, 210, 234
TscAI	CASTG	2 cut(s)	279, 378
TspDTI	ATGAA	5 cut(s)	56, 96, 119, 635, 723
TspRI	CASTG	2 cut(s)	279, 378
Tth111I	GACNNNGTC	1 cut(s)	373
Vha464I	CTTAAG	2 cut(s)	209, 233
XapI	RAATTY	2 cut(s)	622, 711
XceI	RCATGY	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.