Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Reverse (-)

23762155 .. 23764215

Gene Structure 2061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATTGGAGCGCCAATGGAGACGAAGGGGCTCAATGCTAACAGAGAAAGCAAGGCCAATCCGAGCCGCAAAGAGATAATCGAGAAGAAGAAGGCCATGGATGCACTGTTAAGAGCAGCTTCTGCTGAAAAGGACCAACTTTCTGCTTTCCCTGCCTTTCGCCGTTACCAAACAAACGGGCTATCTGCATTTTTGGAATCAGGACGCGGGGACAAGCTTTCGTCTTCTGTAAAGCATTACATTCAAAATCTCCTTAAGGCCAATATGGAGGGGCTGTATGGATCTGAGTGGCTGGTGGAAGAGAGGGTGAAGCGCAGGGAGATGGTTGCACCTGAAGCACGTTATATATTTGTACGTGAGGCTTCAAATGCAGGTGCTAGTGAAATGTTAACAATGTCGGAGCAAGAAAGTACCTCAGCTAGTTGTGTGGAGAAGAGGGGACCCATGGTTGGGTTTGTACATTTTCGATTTGCCATAGAGGAAGAATTGCCTGTACTTTATGTGTATGAATTGCAACTCGAGCCTCGCGTACAAGGGAAAGGTCTGGGAAAGTTCCTAATGCAACTAATTGAGCTAATTGCTCGCAAGAACCACATGGGTGCTGTCGTTCTAACTGTTCATAAATCAAACTCGGTAGCCATGAATTTCTATTTAAGTAAGATGAGATACATTATATCAACTATATCACCATCACGAGTTATTAATATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

238

Amino Acids

26.7

Weight (kDa)

9.42

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	362
AccII	CGCG	2 cut(s)	207, 528
AciI	CCGC	2 cut(s)	67, 207
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	5 cut(s)	354, 412, 459, 495, 531
AfiI	CCNNNNNNNGG	2 cut(s)	449, 450
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	245, 366
AleI	CACNNNNGTG	1 cut(s)	597
AluBI	AGCT	4 cut(s)	119, 217, 419, 574
AluI	AGCT	4 cut(s)	119, 217, 419, 574
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	289
AlwNI	CAGNNNCTG	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	3 cut(s)	54, 93, 258
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	643
AseI	ATTAAT	1 cut(s)	702
AspLEI	GCGC	2 cut(s)	13, 315
AspS9I	GGNCC	2 cut(s)	133, 440
AsuHPI	GGTGA	2 cut(s)	319, 678
AvaI	CYCGRG	1 cut(s)	518
AvaII	GGWCC	2 cut(s)	133, 440
BanII	GRGCYC	1 cut(s)	33
BauI	CACGAG	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	2 cut(s)	316, 697
BceAI	ACGGC	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	378, 420
BfoI	RGCGCY	1 cut(s)	14
BfrI	CTTAAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	362
BisI	GCNGC	2 cut(s)	67, 117
BlsI	GCNGC	2 cut(s)	68, 118
Bme18I	GGWCC	2 cut(s)	133, 440
BmeT110I	CYCGRG	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	133, 440
BmiI	GGNNCC	2 cut(s)	441, 442
BmsI	GCATC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	415
BsaAI	YACGTR	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	96, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 450
BseDI	CCNNGG	2 cut(s)	96, 444
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	449, 450
BseMII	CTCAG	2 cut(s)	276, 429
BseXI	GCAGC	1 cut(s)	128
Bsh1236I	CGCG	2 cut(s)	207, 528
BshFI	GGCC	3 cut(s)	56, 95, 260
BsiHKCI	CYCGRG	1 cut(s)	518
BslFI	GGGAC	2 cut(s)	224, 453
BslI	CCNNNNNNNGG	2 cut(s)	449, 450
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	224, 453
BsnI	GGCC	3 cut(s)	56, 95, 260
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp1407I	TGTACA	1 cut(s)	457
Bsp143I	GATC	1 cut(s)	281
Bsp19I	CCATGG	2 cut(s)	96, 444
BspACI	CCGC	2 cut(s)	67, 207
BspANI	GGCC	3 cut(s)	56, 95, 260
BspCNI	CTCAG	2 cut(s)	277, 428
BspFNI	CGCG	2 cut(s)	207, 528
BspLI	GGNNCC	2 cut(s)	441, 442
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	96, 444
BssMI	GATC	1 cut(s)	281
BssSI	CACGAG	1 cut(s)	693
BssT1I	CCWWGG	2 cut(s)	96, 444
Bst2BI	CACGAG	1 cut(s)	693
Bst4CI	ACNGT	2 cut(s)	108, 616
Bst6I	CTCTTC	2 cut(s)	294, 428
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	2 cut(s)	285, 415
BstDSI	CCRYGG	2 cut(s)	96, 444
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	2 cut(s)	207, 528
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 315
BstKTI	GATC	1 cut(s)	284
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 122, 152, 335, 368, 520
BstUI	CGCG	2 cut(s)	207, 528
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	56, 95, 260
BtgI	CCRYGG	2 cut(s)	96, 444
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	583
CaiI	CAGNNNCTG	1 cut(s)	122
CfoI	GCGC	2 cut(s)	13, 315
Cfr13I	GGNCC	2 cut(s)	133, 440
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	5 cut(s)	353, 411, 458, 494, 530
CviAII	CATG	4 cut(s)	97, 445, 595, 640
CviQI	GTAC	5 cut(s)	353, 411, 458, 494, 530
DdeI	CTNAG	2 cut(s)	285, 415
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
Eam1104I	CTCTTC	2 cut(s)	294, 428
EarI	CTCTTC	2 cut(s)	294, 428
Eco130I	CCWWGG	2 cut(s)	96, 444
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	133, 440
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	440
EcoT14I	CCWWGG	2 cut(s)	96, 444
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	96, 444
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	4 cut(s)	100, 448, 598, 643
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FaqI	GGGAC	2 cut(s)	224, 453
FatI	CATG	4 cut(s)	96, 444, 594, 639
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	67, 117
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	67, 117
FspBI	CTAG	2 cut(s)	378, 420
GlaI	GCGC	2 cut(s)	12, 314
GluI	GCNGC	2 cut(s)	67, 117
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	56, 95, 260
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	2 cut(s)	13, 315
Hin1II	CATG	4 cut(s)	100, 448, 598, 643
Hin6I	GCGC	2 cut(s)	11, 313
HinP1I	GCGC	2 cut(s)	11, 313
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	1 cut(s)	197
HpaI	GTTAAC	1 cut(s)	390
HphI	GGTGA	2 cut(s)	319, 678
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	3 cut(s)	63, 286, 400
Hpy188III	TCNNGA	3 cut(s)	82, 201, 693
Hpy8I	GTNNAC	1 cut(s)	390
HpyAV	CCTTC	2 cut(s)	19, 85
HpyCH4III	ACNGT	2 cut(s)	108, 616
HpyCH4IV	ACGT	2 cut(s)	340, 355
HpyCH4V	TGCA	6 cut(s)	104, 188, 329, 371, 514, 562
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 122, 152, 335, 368, 520
HpyF3I	CTNAG	2 cut(s)	285, 415
HpySE526I	ACGT	2 cut(s)	340, 355
Hsp92II	CATG	4 cut(s)	100, 448, 598, 643
HspAI	GCGC	2 cut(s)	11, 313
KflI	GGGWCCC	1 cut(s)	440
KspAI	GTTAAC	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	281
LmnI	GCTCC	2 cut(s)	8, 400
LpnPI	CCDG	8 cut(s)	165, 186, 278, 301, 345, 357, 504, 530
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	2 cut(s)	378, 420
MaeII	ACGT	2 cut(s)	340, 355
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	6 cut(s)	97, 100, 216, 311, 445, 494
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	5 cut(s)	485, 509, 567, 576, 643
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	7 cut(s)	262, 297, 352, 424, 429, 472, 534
MseI	TTAA	5 cut(s)	110, 255, 389, 653, 702
MslI	CAYNNNNRTG	1 cut(s)	597
MspCI	CTTAAG	1 cut(s)	254
MvnI	CGCG	2 cut(s)	207, 528
MwoI	GCNNNNNNNGC	6 cut(s)	101, 122, 152, 335, 368, 520
NcoI	CCATGG	2 cut(s)	96, 444
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	4 cut(s)	100, 448, 598, 643
NlaIV	GGNNCC	2 cut(s)	441, 442
OliI	CACNNNNGTG	1 cut(s)	597
PaeR7I	CTCGAG	1 cut(s)	518
PaqCI	CACCTGC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	68, 118
Ppu21I	YACGTR	1 cut(s)	356
PpuMI	RGGWCCY	1 cut(s)	440
PshBI	ATTAAT	1 cut(s)	702
Psp5II	RGGWCCY	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	441, 442
PspPI	GGNCC	2 cut(s)	133, 440
PspPPI	RGGWCCY	1 cut(s)	440
PspXI	VCTCGAGB	1 cut(s)	518
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	281
RsaI	GTAC	5 cut(s)	354, 412, 459, 495, 531
RsaNI	GTAC	5 cut(s)	353, 411, 458, 494, 530
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	5 cut(s)	110, 255, 389, 653, 702
SatI	GCNGC	2 cut(s)	67, 117
Sau3AI	GATC	1 cut(s)	281
Sau96I	GGNCC	2 cut(s)	133, 440
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	518
SinI	GGWCC	2 cut(s)	133, 440
SlaI	CTCGAG	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	2 cut(s)	254, 518
SmoI	CTYRAG	2 cut(s)	254, 518
Sse9I	AATT	5 cut(s)	485, 509, 567, 576, 643
SsiI	CCGC	2 cut(s)	67, 207
SspMI	CTAG	2 cut(s)	378, 420
StyI	CCWWGG	2 cut(s)	96, 444
TaaI	ACNGT	2 cut(s)	108, 616
TaiI	ACGT	2 cut(s)	343, 358
TaqI	TCGA	3 cut(s)	81, 466, 519
TasI	AATT	5 cut(s)	485, 509, 567, 576, 643
TatI	WGTACW	2 cut(s)	457, 493
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	5 cut(s)	110, 255, 389, 653, 702
Tru9I	TTAA	5 cut(s)	110, 255, 389, 653, 702
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	522, 608, 656
TspRI	CASTG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	133, 440
VspI	ATTAAT	1 cut(s)	702
XapI	RAATTY	1 cut(s)	643
XhoI	CTCGAG	1 cut(s)	518
XspI	CTAG	2 cut(s)	378, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.