Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Forward (+)

613236 .. 616274

Gene Structure 3039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G000750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAGTCGAAGGGAAATGGCCCCCCTCCCAAGATTAAGAATAAGATGAAGCGCAAAGAGATACTTGAGAAGAAGAAGGCTAGGGATGAACTGATAAAGGTAGCTTGTGCGGAGAAAGACCATCTCTCTGCCTTTCATGCCTTTCGCCATTACCAAAGAAACGGCTTGTCTGCATGTCTGGAATCAGGAAGAGGGGACAAGCTATCAGCTTCTCTTAAGCAGTACATTCAAAATCTCCTTAAGGCTAATATGGAGGGGCCATATGGAACCGAGTGGCCAGTGGAAGAGAAGGTGAAGCGTAGGGAGATGGTTGCGTCAGAAGCACGTTATATATTTGTCCATGAGGCTTTGGATGCAAGTGCAAGTGAATTGTTGACAGTGTCTGAGCAGGAGAGGACTGAAGCTGGTTGTGTGGAGGGGAGGGGATCCATGCTCGGGTTTGTGCATTTTCGCTTTGTCATAGAGGAAGATTTGCCTGTTCTTTATGTGTATGAGTTACAACTTGAGCCTCGTGTGCAAGGGAAAGAATCACATGGGTGCTGTTGTTCTACTGTTCAAAAGGCAAACTTGGTAGCGATGAATTTCTATACAAGTAAGCTGAGATATGTTATCTCAACTATATCACCATCCAAAGTTGATCCATGGTTAGGAACTCAGAAAAGTTATGAAATTCTTTGCAAATCATTCAGTAATGATGCTAAAGCTATATTGGAGGTATGTTTCTGCAATGGTACACCTCTAGAGCTGATCCATAAAATTGGTCACTCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

257

Amino Acids

29.01

Weight (kDa)

8.48

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	4 cut(s)	420, 433, 632, 742
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	2 cut(s)	580, 669
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	2 cut(s)	224, 733
AfiI	CCNNNNNNNGG	2 cut(s)	435, 647
AflII	CTTAAG	2 cut(s)	215, 239
AgsI	TTSAA	2 cut(s)	230, 557
AleI	CACNNNNGTG	1 cut(s)	535
AluBI	AGCT	7 cut(s)	104, 202, 209, 404, 598, 704, 745
AluI	AGCT	7 cut(s)	104, 202, 209, 404, 598, 704, 745
AlwI	GGATC	4 cut(s)	420, 433, 632, 742
AlwNI	CAGNNNCTG	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	19, 257, 275
ApoI	RAATTY	2 cut(s)	580, 669
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	20, 257
AsuHPI	GGTGA	2 cut(s)	304, 615
AvaI	CYCGRG	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	277
BamHI	GGATCC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	510
BccI	CCATC	3 cut(s)	129, 301, 634
BceAI	ACGGC	1 cut(s)	178
BfaI	CTAG	2 cut(s)	81, 740
BfrI	CTTAAG	2 cut(s)	215, 239
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	20, 257
BmiI	GGNNCC	4 cut(s)	22, 258, 268, 427
BmsI	GCATC	2 cut(s)	343, 685
BpuEI	CTTGAG	2 cut(s)	86, 524
BsaJI	CCNNGG	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	2 cut(s)	435, 647
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	733
BseDI	CCNNGG	1 cut(s)	641
BseGI	GGATG	3 cut(s)	91, 358, 626
BseLI	CCNNNNNNNGG	2 cut(s)	435, 647
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	3 cut(s)	375, 590, 668
BseNI	ACTGG	1 cut(s)	278
BshFI	GGCC	3 cut(s)	21, 259, 277
BsiHKCI	CYCGRG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	435, 647
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	3 cut(s)	21, 259, 277
BsoBI	CYCGRG	1 cut(s)	434
Bsp143I	GATC	3 cut(s)	425, 637, 747
Bsp19I	CCATGG	1 cut(s)	641
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	3 cut(s)	21, 259, 277
BspCNI	CTCAG	3 cut(s)	376, 591, 667
BspLI	GGNNCC	4 cut(s)	22, 258, 268, 427
BspPI	GGATC	4 cut(s)	420, 433, 632, 742
BspTI	CTTAAG	2 cut(s)	215, 239
BsrDI	GCAATG	1 cut(s)	733
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	641
BssMI	GATC	3 cut(s)	425, 637, 747
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	641
Bst2BI	CACGAG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	379, 553
Bst6I	CTCTTC	2 cut(s)	184, 279
BstAFI	CTTAAG	2 cut(s)	215, 239
BstDEI	CTNAG	3 cut(s)	384, 599, 654
BstDSI	CCRYGG	1 cut(s)	641
BstF5I	GGATG	3 cut(s)	91, 358, 626
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	428, 640, 750
BstMBI	GATC	3 cut(s)	425, 637, 747
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 320, 353, 514
BstNSI	RCATGY	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	425
BstXI	CCANNNNNNTGG	1 cut(s)	758
BstYI	RGATCY	1 cut(s)	425
BsuRI	GGCC	3 cut(s)	21, 259, 277
BtgI	CCRYGG	1 cut(s)	641
BtgZI	GCGATG	1 cut(s)	590
BtsCI	GGATG	3 cut(s)	91, 358, 626
BtsIMutI	CAGTG	2 cut(s)	285, 384
CaiI	CAGNNNCTG	1 cut(s)	383
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	20, 257
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	223, 732
CviAII	CATG	6 cut(s)	137, 174, 341, 430, 533, 642
CviQI	GTAC	2 cut(s)	223, 732
DdeI	CTNAG	3 cut(s)	384, 599, 654
DpnI	GATC	3 cut(s)	427, 639, 749
DpnII	GATC	3 cut(s)	425, 637, 747
EaeI	YGGCCR	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	184, 279
EarI	CTCTTC	2 cut(s)	184, 279
Eco130I	CCWWGG	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	641
ErhI	CCWWGG	1 cut(s)	641
FaeI	CATG	6 cut(s)	140, 177, 344, 433, 536, 645
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 551, 583
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	6 cut(s)	136, 173, 340, 429, 532, 641
FauNDI	CATATG	1 cut(s)	262
FokI	GGATG	3 cut(s)	98, 365, 613
FspBI	CTAG	2 cut(s)	81, 740
GlaI	GCGC	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	21, 259, 277
HgaI	GACGC	1 cut(s)	303
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	6 cut(s)	140, 177, 344, 433, 536, 645
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	3 cut(s)	5, 182, 527
HphI	GGTGA	2 cut(s)	304, 615
Hpy166II	GTNNAC	2 cut(s)	375, 734
Hpy188I	TCNGA	3 cut(s)	319, 385, 657
Hpy188III	TCNNGA	3 cut(s)	179, 186, 740
Hpy8I	GTNNAC	2 cut(s)	375, 734
HpyAV	CCTTC	3 cut(s)	4, 70, 283
HpyCH4III	ACNGT	2 cut(s)	379, 553
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	7 cut(s)	173, 356, 362, 445, 517, 678, 726
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 320, 353, 514
HpyF3I	CTNAG	3 cut(s)	384, 599, 654
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	6 cut(s)	140, 177, 344, 433, 536, 645
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	425, 637, 747
LpnPI	CCDG	6 cut(s)	164, 171, 291, 374, 390, 489
LweI	GCATC	2 cut(s)	343, 685
MaeI	CTAG	2 cut(s)	81, 740
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	495, 761
MalI	GATC	3 cut(s)	427, 639, 749
MboI	GATC	3 cut(s)	425, 637, 747
MboII	GAAGA	5 cut(s)	82, 85, 201, 296, 479
MflI	RGATCY	1 cut(s)	425
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	4 cut(s)	368, 580, 669, 756
MluNI	TGGCCA	1 cut(s)	277
MlyI	GAGTC	1 cut(s)	14
Mox20I	TGGCCA	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	277
MseI	TTAA	3 cut(s)	36, 216, 240
MslI	CAYNNNNRTG	1 cut(s)	535
Msp20I	TGGCCA	1 cut(s)	277
MspCI	CTTAAG	2 cut(s)	215, 239
MwoI	GCNNNNNNNGC	4 cut(s)	137, 320, 353, 514
NcoI	CCATGG	1 cut(s)	641
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	3 cut(s)	425, 637, 747
NlaIII	CATG	6 cut(s)	140, 177, 344, 433, 536, 645
NlaIV	GGNNCC	4 cut(s)	22, 258, 268, 427
NmuCI	GTSAC	1 cut(s)	761
NspI	RCATGY	1 cut(s)	177
OliI	CACNNNNGTG	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	182, 527
PflFI	GACNNNGTC	1 cut(s)	379
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	4 cut(s)	22, 258, 268, 427
PspPI	GGNCC	2 cut(s)	20, 257
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	425
PsyI	GACNNNGTC	1 cut(s)	379
RsaI	GTAC	2 cut(s)	224, 733
RsaNI	GTAC	2 cut(s)	223, 732
RseI	CAYNNNNRTG	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	36, 216, 240
Sau3AI	GATC	3 cut(s)	425, 637, 747
Sau96I	GGNCC	2 cut(s)	20, 257
SchI	GAGTC	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	343, 685
SmiMI	CAYNNNNRTG	1 cut(s)	535
SmlI	CTYRAG	4 cut(s)	65, 215, 239, 503
SmoI	CTYRAG	4 cut(s)	65, 215, 239, 503
Sse9I	AATT	4 cut(s)	368, 580, 669, 756
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	2 cut(s)	81, 740
StyI	CCWWGG	1 cut(s)	641
TaaI	ACNGT	2 cut(s)	379, 553
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	8
TasI	AATT	4 cut(s)	368, 580, 669, 756
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	182, 527
Tru1I	TTAA	3 cut(s)	36, 216, 240
Tru9I	TTAA	3 cut(s)	36, 216, 240
TscAI	CASTG	2 cut(s)	285, 384
TseFI	GTSAC	1 cut(s)	761
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	5 cut(s)	62, 102, 125, 593, 681
TspRI	CASTG	2 cut(s)	285, 384
Tth111I	GACNNNGTC	1 cut(s)	379
Vha464I	CTTAAG	2 cut(s)	215, 239
XapI	RAATTY	2 cut(s)	580, 669
XbaI	TCTAGA	1 cut(s)	739
XceI	RCATGY	1 cut(s)	177
XspI	CTAG	2 cut(s)	81, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.