Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006214.1

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Reverse (-)

52423 .. 54526

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006214.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggagtcgaagggaaatgctccccccaagattaagaataagatgaagcgcaaagagatacttgagaagaagaaggctagggatgaactgataaaggtagcttgtgcggagaaggaccatctctctgactttcatgcctttcgccattaccaaagaaacggtttgtctgcatgtctggaatcaggaagaggggacaagctatcagcttctcttaagcagtacattcaaaatctccttaaggctaatatggaggggccatatggaaccgagtggccagtggaagagaaggtgaagcgtagggagatggttgcatcagaagcacgttatatatttgtccatgaggctttggatgcaagtgcaagtgaattgttgacagtgtctgagcaggagaggactgaagctggttgtgtggaggggaggggatccatgctcgggtttgtgcattttcgctttgtcatagaggaagatttgcctgttctttatgtgtatgagttacaacttgagcctcgtgtgcaagggaaaggtctcggcaagttcctaatgcaactaattgagctaattgctcgcaagaatcacatgggtgctgttgttctgactgttcaaaaggcaaacttggtagcgatgaatttctatacaagtaagctgagatatgttatctcaactatatcaccatccaaagttgatccatggttaggaactcagaaaagttatgaaattctttgcaaatcattcagtaatgatgctaaagctatattggagggcccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

255

Amino Acids

28.87

Weight (kDa)

8.99

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	3 cut(s)	417, 430, 677
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	625, 714
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	432, 692
AflII	CTTAAG	2 cut(s)	212, 236
AgsI	TTSAA	2 cut(s)	227, 602
AleI	CACNNNNGTG	1 cut(s)	579
AluBI	AGCT	7 cut(s)	101, 199, 206, 401, 556, 643, 749
AluI	AGCT	7 cut(s)	101, 199, 206, 401, 556, 643, 749
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	3 cut(s)	417, 430, 677
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	3 cut(s)	254, 272, 760
ApaI	GGGCCC	1 cut(s)	764
ApoI	RAATTY	2 cut(s)	625, 714
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	4 cut(s)	115, 254, 760, 761
AsuHPI	GGTGA	2 cut(s)	301, 660
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	764
BalI	TGGCCA	1 cut(s)	274
BamHI	GGATCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	764
BauI	CACGAG	1 cut(s)	507
BccI	CCATC	3 cut(s)	126, 298, 679
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	78
BfrI	CTTAAG	2 cut(s)	212, 236
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	4 cut(s)	115, 254, 760, 761
BmiI	GGNNCC	4 cut(s)	255, 265, 424, 762
BmsI	GCATC	3 cut(s)	320, 340, 730
BpuEI	CTTGAG	2 cut(s)	83, 521
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 692
Bse1I	ACTGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	686
BseGI	GGATG	3 cut(s)	88, 355, 671
BseLI	CCNNNNNNNGG	2 cut(s)	432, 692
BseMII	CTCAG	3 cut(s)	372, 635, 713
BseNI	ACTGG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	764
BshFI	GGCC	3 cut(s)	256, 274, 762
BsiHKCI	CYCGRG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	432, 692
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	256, 274, 762
Bso31I	GGTCTC	1 cut(s)	530
BsoBI	CYCGRG	1 cut(s)	431
Bsp120I	GGGCCC	1 cut(s)	760
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp143I	GATC	2 cut(s)	422, 682
Bsp19I	CCATGG	1 cut(s)	686
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	3 cut(s)	256, 274, 762
BspCNI	CTCAG	3 cut(s)	373, 636, 712
BspLI	GGNNCC	4 cut(s)	255, 265, 424, 762
BspPI	GGATC	3 cut(s)	417, 430, 677
BspTI	CTTAAG	2 cut(s)	212, 236
BspTNI	GGTCTC	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	686
BssMI	GATC	2 cut(s)	422, 682
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	686
Bst2BI	CACGAG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	161, 376, 598
Bst6I	CTCTTC	2 cut(s)	181, 276
BstAFI	CTTAAG	2 cut(s)	212, 236
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	3 cut(s)	381, 644, 699
BstDSI	CCRYGG	1 cut(s)	686
BstF5I	GGATG	3 cut(s)	88, 355, 671
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	425, 685
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	2 cut(s)	422, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 350, 511
BstNSI	RCATGY	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	764
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	3 cut(s)	256, 274, 762
BtgI	CCRYGG	1 cut(s)	686
BtgZI	GCGATG	1 cut(s)	635
BtsCI	GGATG	3 cut(s)	88, 355, 671
BtsIMutI	CAGTG	2 cut(s)	282, 381
Cac8I	GCNNGC	1 cut(s)	565
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	4 cut(s)	115, 254, 760, 761
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	7 cut(s)	134, 171, 338, 427, 577, 687, 765
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	381, 644, 699
DpnI	GATC	2 cut(s)	424, 684
DpnII	GATC	2 cut(s)	422, 682
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	181, 276
EarI	CTCTTC	2 cut(s)	181, 276
Eco130I	CCWWGG	1 cut(s)	686
Eco24I	GRGCYC	1 cut(s)	764
Eco31I	GGTCTC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	760
EcoT14I	CCWWGG	1 cut(s)	686
EcoT38I	GRGCYC	1 cut(s)	764
ErhI	CCWWGG	1 cut(s)	686
FaeI	CATG	7 cut(s)	137, 174, 341, 430, 580, 690, 768
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 596, 628
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	7 cut(s)	133, 170, 337, 426, 576, 686, 764
FauNDI	CATATG	1 cut(s)	259
FokI	GGATG	3 cut(s)	95, 362, 658
FriOI	GRGCYC	1 cut(s)	764
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	50
HaeIII	GGCC	3 cut(s)	256, 274, 762
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	7 cut(s)	137, 174, 341, 430, 580, 690, 768
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	3 cut(s)	5, 179, 571
HphI	GGTGA	2 cut(s)	301, 660
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	5 cut(s)	127, 316, 382, 594, 702
Hpy188III	TCNNGA	2 cut(s)	176, 183
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	4 cut(s)	4, 67, 106, 280
HpyCH4III	ACNGT	3 cut(s)	161, 376, 598
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	8 cut(s)	170, 311, 353, 359, 442, 514, 544, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 350, 511
HpyF3I	CTNAG	3 cut(s)	381, 644, 699
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	7 cut(s)	137, 174, 341, 430, 580, 690, 768
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	422, 682
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	6 cut(s)	161, 168, 288, 371, 387, 486
LweI	GCATC	3 cut(s)	320, 340, 730
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	492
MalI	GATC	2 cut(s)	424, 684
MboI	GATC	2 cut(s)	422, 682
MboII	GAAGA	5 cut(s)	79, 82, 198, 293, 476
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	764
MlsI	TGGCCA	1 cut(s)	274
MluCI	AATT	5 cut(s)	365, 549, 558, 625, 714
MluNI	TGGCCA	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	9 cut(s)	182, 244, 334, 384, 406, 411, 454, 516, 751
Mox20I	TGGCCA	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	274
MseI	TTAA	3 cut(s)	33, 213, 237
MslI	CAYNNNNRTG	1 cut(s)	579
Msp20I	TGGCCA	1 cut(s)	274
MspCI	CTTAAG	2 cut(s)	212, 236
MwoI	GCNNNNNNNGC	3 cut(s)	317, 350, 511
NcoI	CCATGG	1 cut(s)	686
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	2 cut(s)	422, 682
NlaIII	CATG	7 cut(s)	137, 174, 341, 430, 580, 690, 768
NlaIV	GGNNCC	4 cut(s)	255, 265, 424, 762
NmeAIII	GCCGAG	1 cut(s)	507
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	179, 571
PflFI	GACNNNGTC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	4 cut(s)	255, 265, 424, 762
PspOMI	GGGCCC	1 cut(s)	760
PspPI	GGNCC	4 cut(s)	115, 254, 760, 761
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	422
PsyI	GACNNNGTC	1 cut(s)	376
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	3 cut(s)	33, 213, 237
Sau3AI	GATC	2 cut(s)	422, 682
Sau96I	GGNCC	4 cut(s)	115, 254, 760, 761
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	764
SfaNI	GCATC	3 cut(s)	320, 340, 730
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	4 cut(s)	62, 212, 236, 500
SmoI	CTYRAG	4 cut(s)	62, 212, 236, 500
Sse9I	AATT	5 cut(s)	365, 549, 558, 625, 714
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	686
TaaI	ACNGT	3 cut(s)	161, 376, 598
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	8
TasI	AATT	5 cut(s)	365, 549, 558, 625, 714
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	179, 571
Tru1I	TTAA	3 cut(s)	33, 213, 237
Tru9I	TTAA	3 cut(s)	33, 213, 237
TscAI	CASTG	2 cut(s)	282, 381
TspDTI	ATGAA	5 cut(s)	59, 99, 122, 638, 726
TspRI	CASTG	2 cut(s)	282, 381
Tth111I	GACNNNGTC	1 cut(s)	376
Vha464I	CTTAAG	2 cut(s)	212, 236
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	2 cut(s)	625, 714
XceI	RCATGY	1 cut(s)	174
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.