Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Forward (+)

629039 .. 631150

Gene Structure 2112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG009100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAGTGGAAGGGAAATGGCCCCCCTCCCAAGATTAAGAATAAGATGAAGCGCAAAGAGATACTTGAGAAGAAGAAGGCTAGGGATGAACTGATAAAGGTAGCTTGTGCGGAGAAAGACCATCTCTCTGCCTTTCATGCCTTTCGCCATTACCAAAGAAACGGCTTGTCTGCATGTCTGGAATCAGGAAGAGGGGACAAGCTATCAGCTTCTCTTAAGCAGTACATTCAAAATCTCCTTAAGGCTAATATGGAGGGGCCATATGGAACCGAGTGGCCAGTGGAAGAGAAGGTGAAGCGTAGGGAGATGGTTGCATCAGAAGCACGTTATATATTTGTCCATGAGGCTTTGGATGCAAGTGCAAGTGAATTGTTGACAGTGTCTGAGCAGGAGAGGGCTGAAGCTGGTTGTGTGGAGGGGAGGGGATCCATGCTCGGGTTTGTGCATTTTCGCTTTGTCATAGAGGAAGATTTGCCTGTTCTTTATGTGTATGAGTTACAACTTGAGCCTCGTGCGCAAGGGAAAGGTCTCGGCAAGTTCCTAATGCAACTAATTGAGCTAATTGCTCGCAAGAATCACATGGGTGCTGTTGTTCTGACTGTTCAAAAGGCAAACTTGGTAGCGATGAATTTCTATACAAGTAAGCTGAGATATGTTATCTCAACTATATCACCATCCAAAGTTGATCCATGGTTAGGAACTCAGAAAAGTTATGAAATTCTTTGCAAATCATTCAGTAATGATGCTAAAGCTATATTGGAGGGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

256

Amino Acids

28.95

Weight (kDa)

9.1

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	137 - 213	6e-10	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	516
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	3 cut(s)	420, 433, 680
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	2 cut(s)	628, 717
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	435, 695
AflII	CTTAAG	2 cut(s)	215, 239
AgsI	TTSAA	2 cut(s)	230, 605
AleI	CACNNNNGTG	1 cut(s)	582
AluBI	AGCT	7 cut(s)	104, 202, 209, 404, 559, 646, 752
AluI	AGCT	7 cut(s)	104, 202, 209, 404, 559, 646, 752
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	3 cut(s)	420, 433, 680
AlwNI	CAGNNNCTG	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	4 cut(s)	19, 257, 275, 763
ApaI	GGGCCC	1 cut(s)	767
ApoI	RAATTY	2 cut(s)	628, 717
AspLEI	GCGC	2 cut(s)	54, 517
AspS9I	GGNCC	4 cut(s)	20, 257, 763, 764
AsuHPI	GGTGA	2 cut(s)	304, 663
AvaI	CYCGRG	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	767
BalI	TGGCCA	1 cut(s)	277
BamHI	GGATCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	767
BauI	CACGAG	1 cut(s)	510
BccI	CCATC	3 cut(s)	129, 301, 682
BceAI	ACGGC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	1 cut(s)	81
BfrI	CTTAAG	2 cut(s)	215, 239
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	4 cut(s)	20, 257, 763, 764
BmiI	GGNNCC	5 cut(s)	22, 258, 268, 427, 765
BmsI	GCATC	3 cut(s)	323, 343, 733
BpuEI	CTTGAG	2 cut(s)	86, 524
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	2 cut(s)	435, 695
Bse1I	ACTGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	689
BseGI	GGATG	3 cut(s)	91, 358, 674
BseLI	CCNNNNNNNGG	2 cut(s)	435, 695
BseMII	CTCAG	3 cut(s)	375, 638, 716
BseNI	ACTGG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	767
BshFI	GGCC	4 cut(s)	21, 259, 277, 765
BsiHKCI	CYCGRG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	435, 695
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	4 cut(s)	21, 259, 277, 765
Bso31I	GGTCTC	1 cut(s)	533
BsoBI	CYCGRG	1 cut(s)	434
Bsp120I	GGGCCC	1 cut(s)	763
Bsp1286I	GDGCHC	1 cut(s)	767
Bsp143I	GATC	2 cut(s)	425, 685
Bsp19I	CCATGG	1 cut(s)	689
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	4 cut(s)	21, 259, 277, 765
BspCNI	CTCAG	3 cut(s)	376, 639, 715
BspLI	GGNNCC	5 cut(s)	22, 258, 268, 427, 765
BspPI	GGATC	3 cut(s)	420, 433, 680
BspTI	CTTAAG	2 cut(s)	215, 239
BspTNI	GGTCTC	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	689
BssMI	GATC	2 cut(s)	425, 685
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	689
Bst2BI	CACGAG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	379, 601
Bst6I	CTCTTC	2 cut(s)	184, 279
BstAFI	CTTAAG	2 cut(s)	215, 239
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	3 cut(s)	384, 647, 702
BstDSI	CCRYGG	1 cut(s)	689
BstF5I	GGATG	3 cut(s)	91, 358, 674
BstHHI	GCGC	2 cut(s)	54, 517
BstKTI	GATC	2 cut(s)	428, 688
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	2 cut(s)	425, 685
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 320, 353, 514
BstNSI	RCATGY	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	767
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuRI	GGCC	4 cut(s)	21, 259, 277, 765
BtgI	CCRYGG	1 cut(s)	689
BtgZI	GCGATG	1 cut(s)	638
BtsCI	GGATG	3 cut(s)	91, 358, 674
BtsIMutI	CAGTG	2 cut(s)	285, 384
Cac8I	GCNNGC	1 cut(s)	568
CaiI	CAGNNNCTG	1 cut(s)	383
CfoI	GCGC	2 cut(s)	54, 517
Cfr13I	GGNCC	4 cut(s)	20, 257, 763, 764
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	7 cut(s)	137, 174, 341, 430, 580, 690, 768
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	3 cut(s)	384, 647, 702
DpnI	GATC	2 cut(s)	427, 687
DpnII	GATC	2 cut(s)	425, 685
EaeI	YGGCCR	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	184, 279
EarI	CTCTTC	2 cut(s)	184, 279
Eco130I	CCWWGG	1 cut(s)	689
Eco24I	GRGCYC	1 cut(s)	767
Eco31I	GGTCTC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	763
EcoT14I	CCWWGG	1 cut(s)	689
EcoT38I	GRGCYC	1 cut(s)	767
ErhI	CCWWGG	1 cut(s)	689
FaeI	CATG	7 cut(s)	140, 177, 344, 433, 583, 693, 771
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 599, 631
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	7 cut(s)	136, 173, 340, 429, 579, 689, 767
FauNDI	CATATG	1 cut(s)	262
FokI	GGATG	3 cut(s)	98, 365, 661
FriOI	GRGCYC	1 cut(s)	767
FspBI	CTAG	1 cut(s)	81
FspI	TGCGCA	1 cut(s)	516
GlaI	GCGC	2 cut(s)	53, 516
HaeIII	GGCC	4 cut(s)	21, 259, 277, 765
HhaI	GCGC	2 cut(s)	54, 517
Hin1II	CATG	7 cut(s)	140, 177, 344, 433, 583, 693, 771
Hin6I	GCGC	2 cut(s)	52, 515
HinP1I	GCGC	2 cut(s)	52, 515
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	2 cut(s)	182, 574
HphI	GGTGA	2 cut(s)	304, 663
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	4 cut(s)	319, 385, 597, 705
Hpy188III	TCNNGA	2 cut(s)	179, 186
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	3 cut(s)	4, 70, 283
HpyCH4III	ACNGT	2 cut(s)	379, 601
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	7 cut(s)	173, 314, 356, 362, 445, 547, 726
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 320, 353, 514
HpyF3I	CTNAG	3 cut(s)	384, 647, 702
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	7 cut(s)	140, 177, 344, 433, 583, 693, 771
HspAI	GCGC	2 cut(s)	52, 515
Kzo9I	GATC	2 cut(s)	425, 685
LpnPI	CCDG	6 cut(s)	164, 171, 291, 374, 390, 489
LweI	GCATC	3 cut(s)	323, 343, 733
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	495
MalI	GATC	2 cut(s)	427, 687
MboI	GATC	2 cut(s)	425, 685
MboII	GAAGA	5 cut(s)	82, 85, 201, 296, 479
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	767
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	5 cut(s)	368, 552, 561, 628, 717
MluNI	TGGCCA	1 cut(s)	277
Mox20I	TGGCCA	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	277
MseI	TTAA	3 cut(s)	36, 216, 240
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	277
MspCI	CTTAAG	2 cut(s)	215, 239
MwoI	GCNNNNNNNGC	4 cut(s)	137, 320, 353, 514
NcoI	CCATGG	1 cut(s)	689
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	2 cut(s)	425, 685
NlaIII	CATG	7 cut(s)	140, 177, 344, 433, 583, 693, 771
NlaIV	GGNNCC	5 cut(s)	22, 258, 268, 427, 765
NmeAIII	GCCGAG	1 cut(s)	510
NsbI	TGCGCA	1 cut(s)	516
NspI	RCATGY	1 cut(s)	177
OliI	CACNNNNGTG	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	182, 574
PflFI	GACNNNGTC	1 cut(s)	379
PspN4I	GGNNCC	5 cut(s)	22, 258, 268, 427, 765
PspOMI	GGGCCC	1 cut(s)	763
PspPI	GGNCC	4 cut(s)	20, 257, 763, 764
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	425
PsyI	GACNNNGTC	1 cut(s)	379
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	3 cut(s)	36, 216, 240
Sau3AI	GATC	2 cut(s)	425, 685
Sau96I	GGNCC	4 cut(s)	20, 257, 763, 764
SduI	GDGCHC	1 cut(s)	767
SfaNI	GCATC	3 cut(s)	323, 343, 733
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	4 cut(s)	65, 215, 239, 503
SmoI	CTYRAG	4 cut(s)	65, 215, 239, 503
Sse9I	AATT	5 cut(s)	368, 552, 561, 628, 717
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	689
TaaI	ACNGT	2 cut(s)	379, 601
TaiI	ACGT	1 cut(s)	328
TasI	AATT	5 cut(s)	368, 552, 561, 628, 717
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	182, 574
Tru1I	TTAA	3 cut(s)	36, 216, 240
Tru9I	TTAA	3 cut(s)	36, 216, 240
TscAI	CASTG	2 cut(s)	285, 384
TspDTI	ATGAA	5 cut(s)	62, 102, 125, 641, 729
TspRI	CASTG	2 cut(s)	285, 384
Tth111I	GACNNNGTC	1 cut(s)	379
Vha464I	CTTAAG	2 cut(s)	215, 239
XapI	RAATTY	2 cut(s)	628, 717
XceI	RCATGY	1 cut(s)	177
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.