Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Reverse (-)

66963944 .. 66968793

Gene Structure 4850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGTCGAAGGGAAATGCCCCCAAGATTAAGAATAAGATGAAGCGCAAAGAGATACTTGAGAAGAAGAAGGCTATGGATGAACTGATAAAGGTAGCTTCTGCGGAGAAAGACCATCTCTCTGCCTTTCATGCCTTTCGCCATTACCAAAGAAACGGCTTGTCTGCATGTCTGGAATCAGGAAGAGGGGACAAGCTATCATCTTTTCTTAAGCAGTACATTCAAAATCTCCTTAAGGCTAATATGGAGGGGCCATATGGAACCGAGTGGCCAGTGGAAGAGAAGGTGAAGCGTAGGGAGATGGTTGCATCAGAAGCACGTTATATATTTGTCTATGAGGCTTTGGATGCAAGTGCAAGTGAATTGTTGACAGTGTCTGACCAGGAGAGGACTGAAGCTGGTTGTGTGGAGGGGAGGGGATCCATGCTCGGGTTTGTGCATTTTCGCTTTGTCATAGAGGAAGATTTGCCTGTTCTTTATGTGTATGAGTTACAACTTGAGCCTCGTGTACATGGGAAAGGTCTCGGGAAGTTCCTAATGCAACTAATTGAGCTAATTGCTCACAAGAATCACATGGGTGCTGTTGTTCTAACTGTTCAAAAGGCAAACTTGGTAGCGATGAATTTCTATACAAGTAAGCTGAGATATGTTATCTCAACTATATCACCATCCAAAGTTGATCCATGGTTAGGAACTCAGAAAAGTTATGAAATTCTTTGCAAGTCATTCAGTAATGATGCTAAAGCTATCTTGGAGTTCCAGAGTAGTGGAAACTTTATAGTTCCAGATGTGGGACTGATACTGTGGCAGTGGACAATATATTCAGAAGAGTTTCCTTATAGGCTTTCTTTGTTTCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

287

Amino Acids

32.81

Weight (kDa)

8.54

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	136 - 211	3.9e-08	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	3 cut(s)	414, 427, 674
AcoI	YGGCCR	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	622, 711
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	2 cut(s)	218, 510
AfiI	CCNNNNNNNGG	3 cut(s)	429, 689, 791
AflII	CTTAAG	2 cut(s)	209, 233
AgsI	TTSAA	2 cut(s)	224, 599
AjnI	CCWGG	1 cut(s)	381
AleI	CACNNNNGTG	1 cut(s)	576
AluBI	AGCT	6 cut(s)	98, 196, 398, 553, 640, 746
AluI	AGCT	6 cut(s)	98, 196, 398, 553, 640, 746
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	3 cut(s)	414, 427, 674
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	2 cut(s)	428, 524
AoxI	GGCC	2 cut(s)	251, 269
ApoI	RAATTY	2 cut(s)	622, 711
Asp700I	GAANNNNTTC	1 cut(s)	831
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	298, 657
AvaI	CYCGRG	2 cut(s)	428, 524
BalI	TGGCCA	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	504
BccI	CCATC	3 cut(s)	123, 295, 676
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	527
BfrI	CTTAAG	2 cut(s)	209, 233
Bme1390I	CCNGG	1 cut(s)	383
BmeT110I	CYCGRG	2 cut(s)	428, 524
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	3 cut(s)	252, 262, 421
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	3 cut(s)	317, 337, 727
BpuEI	CTTGAG	2 cut(s)	80, 518
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	3 cut(s)	429, 689, 791
Bse1I	ACTGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	3 cut(s)	85, 352, 668
BseLI	CCNNNNNNNGG	3 cut(s)	429, 689, 791
BseMII	CTCAG	2 cut(s)	632, 710
BseNI	ACTGG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	253, 271
BsiHKCI	CYCGRG	2 cut(s)	428, 524
BslFI	GGGAC	2 cut(s)	203, 807
BslI	CCNNNNNNNGG	3 cut(s)	429, 689, 791
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	2 cut(s)	203, 807
BsnI	GGCC	2 cut(s)	253, 271
Bso31I	GGTCTC	1 cut(s)	527
BsoBI	CYCGRG	2 cut(s)	428, 524
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	2 cut(s)	419, 679
Bsp19I	CCATGG	1 cut(s)	683
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	253, 271
BspCNI	CTCAG	2 cut(s)	633, 709
BspLI	GGNNCC	3 cut(s)	252, 262, 421
BspPI	GGATC	3 cut(s)	414, 427, 674
BspTI	CTTAAG	2 cut(s)	209, 233
BspTNI	GGTCTC	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	683
BssMI	GATC	2 cut(s)	419, 679
BssSI	CACGAG	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	683
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	3 cut(s)	373, 595, 804
Bst6I	CTCTTC	3 cut(s)	178, 273, 822
BstAFI	CTTAAG	2 cut(s)	209, 233
BstAUI	TGTACA	1 cut(s)	508
BstDEI	CTNAG	2 cut(s)	641, 696
BstDSI	CCRYGG	1 cut(s)	683
BstF5I	GGATG	3 cut(s)	85, 352, 668
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	422, 682
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	2 cut(s)	419, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 314, 347
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	419
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	253, 271
BtgI	CCRYGG	1 cut(s)	683
BtgZI	GCGATG	1 cut(s)	632
BtsCI	GGATG	3 cut(s)	85, 352, 668
BtsI	GCAGTG	1 cut(s)	815
BtsIMutI	CAGTG	3 cut(s)	279, 378, 815
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	217, 509
CviAII	CATG	6 cut(s)	131, 168, 424, 512, 574, 684
CviQI	GTAC	2 cut(s)	217, 509
DdeI	CTNAG	2 cut(s)	641, 696
DpnI	GATC	2 cut(s)	421, 681
DpnII	GATC	2 cut(s)	419, 679
EaeI	YGGCCR	1 cut(s)	269
Eam1104I	CTCTTC	3 cut(s)	178, 273, 822
EarI	CTCTTC	3 cut(s)	178, 273, 822
Eco130I	CCWWGG	1 cut(s)	683
Eco31I	GGTCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	2 cut(s)	428, 524
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	683
FaeI	CATG	6 cut(s)	134, 171, 427, 515, 577, 687
FalI	AAGNNNNNCTT	4 cut(s)	42, 74, 593, 625
FaqI	GGGAC	2 cut(s)	203, 807
FatI	CATG	6 cut(s)	130, 167, 423, 511, 573, 683
FauNDI	CATATG	1 cut(s)	256
FokI	GGATG	3 cut(s)	92, 359, 655
GlaI	GCGC	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	253, 271
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	6 cut(s)	134, 171, 427, 515, 577, 687
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	3 cut(s)	5, 176, 568
HphI	GGTGA	2 cut(s)	298, 657
Hpy166II	GTNNAC	3 cut(s)	369, 509, 813
Hpy188I	TCNGA	4 cut(s)	313, 379, 699, 826
Hpy188III	TCNNGA	5 cut(s)	173, 180, 526, 760, 785
Hpy8I	GTNNAC	3 cut(s)	369, 509, 813
HpyAV	CCTTC	3 cut(s)	4, 64, 277
HpyCH4III	ACNGT	3 cut(s)	373, 595, 804
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	7 cut(s)	167, 308, 350, 356, 439, 541, 720
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 314, 347
HpyF3I	CTNAG	2 cut(s)	641, 696
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	6 cut(s)	134, 171, 427, 515, 577, 687
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	419, 679
LpnPI	CCDG	9 cut(s)	158, 165, 285, 368, 384, 395, 483, 773, 798
LweI	GCATC	3 cut(s)	317, 337, 727
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	489
MalI	GATC	2 cut(s)	421, 681
MboI	GATC	2 cut(s)	419, 679
MboII	GAAGA	6 cut(s)	76, 79, 195, 290, 473, 839
MflI	RGATCY	1 cut(s)	419
MlsI	TGGCCA	1 cut(s)	271
MluCI	AATT	5 cut(s)	362, 546, 555, 622, 711
MluNI	TGGCCA	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	8 cut(s)	179, 241, 331, 381, 403, 408, 451, 513
Mox20I	TGGCCA	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	831
MscI	TGGCCA	1 cut(s)	271
MseI	TTAA	3 cut(s)	30, 210, 234
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	271
MspCI	CTTAAG	2 cut(s)	209, 233
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	131, 314, 347
NcoI	CCATGG	1 cut(s)	683
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	2 cut(s)	419, 679
NlaIII	CATG	6 cut(s)	134, 171, 427, 515, 577, 687
NlaIV	GGNNCC	3 cut(s)	252, 262, 421
NspI	RCATGY	1 cut(s)	171
OliI	CACNNNNGTG	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	2 cut(s)	176, 568
PflFI	GACNNNGTC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	3 cut(s)	252, 262, 421
PspPI	GGNCC	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	419
PsyI	GACNNNGTC	1 cut(s)	373
RsaI	GTAC	2 cut(s)	218, 510
RsaNI	GTAC	2 cut(s)	217, 509
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	30, 210, 234
Sau3AI	GATC	2 cut(s)	419, 679
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	383
SfaNI	GCATC	3 cut(s)	317, 337, 727
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	4 cut(s)	59, 209, 233, 497
SmoI	CTYRAG	4 cut(s)	59, 209, 233, 497
Sse9I	AATT	5 cut(s)	362, 546, 555, 622, 711
SsiI	CCGC	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	683
TaaI	ACNGT	3 cut(s)	373, 595, 804
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	8
TasI	AATT	5 cut(s)	362, 546, 555, 622, 711
TatI	WGTACW	2 cut(s)	216, 508
TfiI	GAWTC	2 cut(s)	176, 568
Tru1I	TTAA	3 cut(s)	30, 210, 234
Tru9I	TTAA	3 cut(s)	30, 210, 234
TscAI	CASTG	3 cut(s)	279, 378, 815
TspDTI	ATGAA	5 cut(s)	56, 96, 119, 635, 723
TspRI	CASTG	3 cut(s)	279, 378, 815
Tth111I	GACNNNGTC	1 cut(s)	373
Vha464I	CTTAAG	2 cut(s)	209, 233
XapI	RAATTY	2 cut(s)	622, 711
XceI	RCATGY	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.